Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G185501 Populus trichocarpa HOM05D006171 ORTHO05D007294 4.4e-175 617.8 310 100.0
Potri.003G185754 Populus trichocarpa HOM05D006171 ORTHO05D007294 1.2e-172 609.8 310 99.0
Sabra03G0135700 Salix brachista HOM05D006171 ORTHO05D007294 2.1e-169 599.0 317 95.9
Potri.001G040100 Populus trichocarpa HOM05D006171 ORTHO05D007294 3.2e-157 558.5 312 90.1
Potri.003G185901 Populus trichocarpa HOM05D006171 ORTHO05D007294 9.8e-151 537.0 270 98.1
Manes.11G069800 Manihot esculenta HOM05D006171 ORTHO05D007294 2.9e-150 535.4 314 85.7
Potri.001G041140 Populus trichocarpa HOM05D006171 ORTHO05D007294 2.9e-150 535.4 312 87.8
Thecc.06G048100 Theobroma cacao HOM05D006171 ORTHO05D007294 3.2e-141 505.4 312 79.5
Duzib235G0222 Durio zibethinus HOM05D006171 ORTHO05D007294 9.2e-141 503.8 311 80.7
PGR102G1595 Punica granatum HOM05D006171 ORTHO05D007294 1.3e-139 500.0 277 86.6
Cfa001846 Carpinus fangiana HOM05D006171 ORTHO05D007294 3.9e-139 498.4 307 81.1
Nitab4.5_0002700g0080 Nicotiana tabacum HOM05D006171 ORTHO05D007294 6.6e-139 497.7 300 82.0
CiPaw.01G256900 Carya illinoinensis HOM05D006171 ORTHO05D007294 3.3e-138 495.4 282 84.0
TWI12G1342 Tripterygium wilfordii HOM05D006171 ORTHO05D007294 1.2e-137 493.4 310 79.7
CAN.G1008.12 Capsicum annuum HOM05D006171 ORTHO05D007294 4.7e-137 491.5 304 78.9
Solyc03g117740.3 Solanum lycopersicum HOM05D006171 ORTHO05D007294 6.2e-137 491.1 304 79.6
SalBow1G2136 Salvia bowleyana HOM05D006171 ORTHO05D007294 1.4e-136 490.0 313 78.6
Sopen03g036650 Solanum pennellii HOM05D006171 ORTHO05D007294 3.1e-136 488.8 304 78.9
Peaxi162Scf00314g01040 Petunia axillaris HOM05D006171 ORTHO05D007294 4.0e-136 488.4 312 77.2
Cpa.g.sc95.67 Carica papaya HOM05D006171 ORTHO05D007294 6.9e-136 487.6 292 83.2
FvH4_6g28180 Fragaria vesca HOM05D006171 ORTHO05D007294 8.9e-136 487.3 278 83.5
Lj5C82T4 Lonicera japonica HOM05D006171 ORTHO05D007294 8.9e-136 487.3 270 87.8
Prupe.3G104600 Prunus persica HOM05D006171 ORTHO05D007294 1.5e-135 486.5 311 78.5
FAN14G3270 Fragaria x ananassa HOM05D006171 ORTHO05D007294 2.0e-135 486.1 278 83.1
PGSC0003DMG400014158 Solanum tuberosum HOM05D006171 ORTHO05D007294 3.4e-135 485.3 286 81.8
BraA09t41476Z Brassica rapa HOM05D000031 ORTHO05D007294 5.8e-135 484.6 271 84.9
THA.LOC104812426 Tarenaya hassleriana HOM05D006171 ORTHO05D007294 5.8e-135 484.6 273 85.0
FAN09G0753 Fragaria x ananassa HOM05D006171 ORTHO05D007294 7.6e-135 484.2 271 84.9
A09p61030 Brassica napus HOM05D000031 ORTHO05D007294 1.3e-134 483.4 272 85.3
Eucgr.F03988 Eucalyptus grandis HOM05D006171 ORTHO05D007294 1.3e-134 483.4 269 86.2
AL1G28240 Arabidopsis lyrata HOM05D006171 ORTHO05D007294 2.9e-134 482.3 311 76.8
Thhalv10008259m.g Eutrema salsugineum HOM05D006171 ORTHO05D007294 2.9e-134 482.3 269 85.9
MD09G1228700 Malus domestica HOM05D006171 ORTHO05D007294 2.9e-134 482.3 262 87.8
Nitab4.5_0004738g0050 Nicotiana tabacum HOM05D006171 ORTHO05D007294 8.4e-134 480.7 279 84.9
Lsat_1_v5_gn_4_84921 Lactuca sativa HOM05D006171 ORTHO05D007294 1.1e-133 480.3 297 78.8
AT1G16080 Arabidopsis thaliana HOM05D006171 ORTHO05D007294 1.4e-133 479.9 311 76.5
RcHm_v2.0_Chr2g0132161 Rosa chinensis HOM05D006171 ORTHO05D007294 1.4e-133 479.9 262 86.3
Sp1g14390 Schrenkiella parvula HOM05D006171 ORTHO05D007294 1.9e-133 479.6 269 85.1
Rhsim12G0183500 Rhododendron simsii HOM05D006171 ORTHO05D007294 2.4e-133 479.2 255 89.0
Carub.0001s1588 Capsella rubella HOM05D006171 ORTHO05D007294 7.1e-133 477.6 310 77.1
Atru.chr1.2816 Acer truncatum HOM05D006171 ORTHO05D007294 1.2e-132 476.9 276 84.4
Ah.09g231760 Amaranthus hybridus HOM05D006171 ORTHO05D007294 1.2e-132 476.9 265 85.3
ECA232G3902 Erigeron canadensis HOM05D006171 ORTHO05D007294 1.2e-132 476.9 269 84.0
AUR62002650 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.1e-132 476.1 262 85.5
Gohir.D05G117900 Gossypium hirsutum HOM05D006171 ORTHO05D007294 2.1e-132 476.1 255 88.6
MSTRG.9390 Avicennia marina HOM05D006171 ORTHO05D007294 6.0e-132 474.6 273 85.3
CSS0034221 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 6.0e-132 474.6 294 80.6
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 7.8e-132 474.2 272 84.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 7.8e-132 474.2 272 84.2
Actinidia36860 Actinidia chinensis HOM05D006171 ORTHO05D007294 1.3e-131 473.4 265 85.7
BcaB02g06590 Brassica carinata HOM05D006171 ORTHO05D007294 1.7e-131 473.0 270 84.1
BraA06t24379Z Brassica rapa HOM05D006171 ORTHO05D007294 1.7e-131 473.0 270 84.1
COL.COLO4_26789 Corchorus olitorius HOM05D006171 ORTHO05D007294 1.7e-131 473.0 254 89.0
BcaB03g14506 Brassica carinata HOM05D000031 ORTHO05D007294 2.3e-131 472.6 274 83.9
A06p12100 Brassica napus HOM05D006171 ORTHO05D007294 2.3e-131 472.6 270 83.7
BolC5t30159H Brassica oleracea HOM05D006171 ORTHO05D007294 2.3e-131 472.6 270 83.7
Hund22405 Selenicereus undatus HOM05D006171 ORTHO05D007294 3.0e-131 472.2 324 74.1
Sc10g0006500 Simmondsia chinensis HOM05D006171 ORTHO05D007294 3.0e-131 472.2 271 83.4
TAR626G1848 Trochodendron aralioides HOM05D006171 ORTHO05D007294 8.7e-131 470.7 269 84.8
BcaC05g25605 Brassica carinata HOM05D006171 ORTHO05D007294 1.1e-130 470.3 270 83.3
Migut.D01148 Erythranthe guttata HOM05D006171 ORTHO05D007294 1.5e-130 469.9 271 84.5
Nn2g12468 Nelumbo nucifera HOM05D006171 ORTHO05D007294 3.3e-130 468.8 301 77.1
CsaV3_7G031750 Cucumis sativus L. HOM05D006171 ORTHO05D007294 5.6e-130 468.0 306 76.8
MELO3C023482.2 Cucumis melo HOM05D006171 ORTHO05D007294 9.6e-130 467.2 306 76.5
Ciclev10025944m.g Citrus clementina HOM05D006171 ORTHO05D007294 1.3e-129 466.8 310 76.1
HanXRQChr16g0499501 Helianthus annuus HOM05D006171 ORTHO05D007294 1.6e-129 466.5 307 75.9
vmacro16838 Vaccinium macrocarpon HOM05D006171 ORTHO05D007294 2.8e-129 465.7 251 88.4
C05p14280 Brassica napus HOM05D006171 ORTHO05D007294 3.6e-129 465.3 270 83.0
unitig_62.g23820 Utricularia gibba HOM05D006171 ORTHO05D007294 1.8e-128 463.0 301 76.4
Aqoxy7G02339 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.4e-128 462.6 280 79.3
ClCG09G003450 Citrullus lanatus HOM05D006171 ORTHO05D007294 2.4e-128 462.6 295 76.3
SGA_v2.0_scaffold74G24604 Striga asiatica HOM05D006171 ORTHO05D007294 2.4e-128 462.6 254 87.0
GSVIVG01016093001 Vitis vinifera HOM05D006171 ORTHO05D007294 4.0e-128 461.8 243 90.9
AUR62034059 Chenopodium quinoa HOM05D006171 ORTHO05D007294 2.0e-127 459.5 306 73.9
Medtr4g007910 Medicago truncatula HOM05D006171 ORTHO05D007294 2.2e-126 456.1 270 80.7
Glyma.08G220900 Glycine max HOM05D006171 ORTHO05D007294 2.9e-126 455.7 305 73.1
Oeu003115.1 Olea europaea HOM05D006171 ORTHO05D007294 4.9e-126 454.9 243 88.1
Oeu003116.1 Olea europaea HOM05D006171 ORTHO05D007294 4.9e-126 454.9 243 88.1
Aa31LG7G650 Aethionema arabicum HOM05D006171 ORTHO05D007294 1.9e-125 453.0 310 73.2
VMungo1309G0227 Vigna mungo HOM05D006171 ORTHO05D007294 2.4e-125 452.6 267 79.8
arahy.Tifrunner.gnm1.ann1.B85C5A Arachis hypogaea HOM05D006171 ORTHO05D007294 5.4e-125 451.4 275 78.9
Glyma.07G020900 Glycine max HOM05D006171 ORTHO05D007294 5.4e-125 451.4 276 78.6
Phvul.009G155700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 5.4e-125 451.4 276 77.5
arahy.Tifrunner.gnm1.ann1.F1WQ27 Arachis hypogaea HOM05D006171 ORTHO05D007294 7.1e-125 451.1 275 78.9
Lj3g0005429 Lotus japonicus HOM05D006171 ORTHO05D007294 7.1e-125 451.1 278 79.1
Lalb_Chr25g0278721 Lupinus albus HOM05D006171 ORTHO05D007294 4.6e-124 448.4 270 81.5
CDE07G0158 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.0e-123 447.2 276 77.9
Psat7g260440 Pisum sativum HOM05D006171 ORTHO05D007294 1.3e-123 446.8 269 79.6
VMungo0647G1588 Vigna mungo HOM05D006171 ORTHO05D007294 1.3e-123 446.8 289 74.4
HPP92_021945 Vanilla planifolia HOM05D006171 ORTHO05D007294 1.5e-122 443.4 271 77.5
Phvul.008G253700 Phaseolus vulgaris HOM05D006171 ORTHO05D007294 2.5e-122 442.6 262 79.4
Cc04_g05360 Coffea canephora HOM05D006171 ORTHO05D007294 1.6e-121 439.9 243 86.0
MBI14_g16440_MAGBIO Magnolia biondii HOM05D006171 ORTHO05D007294 2.4e-120 436.0 252 82.9
CSS0033272 Camellia sinensis var. sinensis HOM05D006171 ORTHO05D007294 1.5e-119 433.3 294 75.2
Zm00001eb177930 Zea mays HOM05D006171 ORTHO05D007294 2.0e-119 433.0 271 77.9
EL10Ac8g19420 Beta vulgaris HOM05D006171 ORTHO05D007294 3.3e-114 415.6 276 75.4
Gorai.009G121800 Gossypium raimondii HOM05D006171 ORTHO05D007294 2.1e-108 396.4 219 88.1
Pp3c1_40240 Physcomitrium patens HOM05D006171 ORTHO05D007294 6.0e-108 394.8 270 70.7
CBR_g3722 Chara braunii HOM05D006171 ORTHO05D007294 3.1e-104 382.5 276 68.8
FAN05G3051 Fragaria x ananassa HOM05D006171 ORTHO05D007294 9.0e-104 380.9 253 75.9
SMO356G0223 Selaginella moellendorffii HOM05D006171 ORTHO05D007294 1.5e-103 380.2 259 68.3
Mapoly0047s0137 Marchantia polymorpha HOM05D006171 ORTHO05D007294 1.9e-101 373.2 287 62.4
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 4.2e-101 372.1 264 67.8
Dinv21434 Davidia involucrata HOM05D006171 ORTHO05D007294 3.0e-99 365.9 199 90.5
Os08g0266300 Oryza sativa ssp. japonica HOM05D006171 ORTHO05D007294 5.1e-99 365.2 239 77.8
CANSAT64G1829 Cannabis sativa HOM05D006171 ORTHO05D007294 5.7e-98 361.7 192 89.6
MD17G1227100 Malus domestica HOM05D006171 ORTHO05D007294 9.7e-98 360.9 190 90.5
HanXRQChr16g0499491 Helianthus annuus HOM05D006171 ORTHO05D007294 1.7e-94 350.1 312 58.0
PSO017G5952 Papaver somniferum HOM05D006171 ORTHO05D007294 2.7e-92 342.8 192 83.9
PSO170G6342 Papaver somniferum HOM05D006171 ORTHO05D007294 1.4e-91 340.5 192 83.3
ATR0580G215 Amborella trichopoda HOM05D006171 ORTHO05D007294 3.9e-91 339.0 190 83.7
MCO15G666 Micromonas commoda HOM05D006171 ORTHO05D007294 7.7e-87 324.7 265 61.1
QL05p037111 Quercus lobata HOM05D006171 ORTHO05D007294 2.9e-86 322.8 188 83.5
Gohir.A05G117000 Gossypium hirsutum HOM05D006171 ORTHO05D007294 9.4e-85 317.8 233 70.8
AagrBONN_evm.TU.Sc2ySwM_344.694 Anthoceros agrestis HOM05D006171 ORTHO05D007294 2.7e-84 316.2 231 68.0
Cre10.g435850 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.0e-83 314.3 264 60.2
PRCOL_00006061 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 2.8e-81 306.2 243 60.9
Hma1.2p1_2173F.1_g316040 Hydrangea macrophylla HOM05D006171 ORTHO05D007294 7.0e-80 301.6 210 74.8
Aqoxy6G02563 Aquilegia oxysepala HOM05D006171 ORTHO05D007294 2.3e-67 260.0 256 53.9
RcHm_v2.0_Chr2g0132191 Rosa chinensis HOM05D006171 ORTHO05D007294 7.0e-64 248.4 188 67.0
Rhsim12G0183600 Rhododendron simsii HOM05D006171 ORTHO05D007294 1.7e-62 243.8 260 54.2
Sed0008158 Sechium edule HOM05D006171 ORTHO05D007294 5.5e-61 238.8 142 78.9
CDE04G3654 Ceratophyllum demersum HOM05D006171 ORTHO05D007294 1.2e-36 157.9 129 61.2
QL05p037113 Quercus lobata HOM05D006171 ORTHO05D007294 1.6e-36 157.5 85 84.7
AagrBONN_evm.TU.Sc2ySwM_344.1199 Anthoceros agrestis HOM05D006171 ORTHO05D007294 4.7e-36 156.0 281 37.4
Cre03.g167050 Chlamydomonas reinhardtii HOM05D006171 ORTHO05D007294 1.2e-23 114.8 319 28.8
RcHm_v2.0_Chr2g0132221 Rosa chinensis HOM05D006171 ORTHO05D007294 3.0e-22 110.2 72 69.4
SEGI_00638 Sequoiadendron giganteum HOM05D006171 ORTHO05D007294 3.0e-22 110.2 65 78.5
PRCOL_00003410 Prasinoderma coloniale HOM05D006171 ORTHO05D007294 1.1e-21 108.2 287 33.4
arahy.Tifrunner.gnm1.ann1.VYJR5C Arachis hypogaea HOM05D006171 ORTHO05D007294 6.4e-17 92.4 104 56.7
Nn5g31109 Nelumbo nucifera HOM05D006171 ORTHO05D007294 7.3e-13 79.0 60 65.0
CARHR016590 Cardamine hirsuta HOM05D006171 ORTHO05D007294 6.0e-07 59.3 36 83.3


User provided reference genes

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