Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.8e-239 831.2 471 100.0
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 1.2e-203 713.4 512 81.8
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 1.3e-122 444.1 473 58.1
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 8.6e-122 441.4 475 57.9
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.3e-119 433.3 482 62.0
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 4.0e-119 432.6 472 58.3
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 9.8e-118 427.9 487 59.3
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 1.4e-116 424.1 471 57.5
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 9.2e-116 421.4 483 56.9
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 1.0e-111 407.9 479 55.1
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 2.3e-111 406.8 480 52.9
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 3.1e-111 406.4 472 54.9
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 4.4e-110 402.5 466 57.9
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 1.3e-109 401.0 443 58.0
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 3.7e-109 399.4 477 52.2
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 3.7e-109 399.4 483 56.9
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 8.3e-109 398.3 475 54.9
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 2.4e-108 396.7 467 58.7
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 7.0e-108 395.2 482 53.1
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 3.0e-106 389.8 484 57.6
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 7.3e-105 385.2 550 48.9
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 2.3e-103 380.2 476 56.3
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 8.3e-101 371.7 473 52.0
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 1.2e-99 367.9 473 51.8
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.7e-99 366.7 485 54.2
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 1.0e-98 364.8 484 51.4
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 8.6e-98 361.7 443 50.1
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.9e-97 360.5 419 52.5
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 1.6e-96 357.5 644 45.7
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 6.2e-96 355.5 413 53.0
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 6.2e-96 355.5 476 51.7
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 8.1e-96 355.1 473 50.5
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.1e-95 354.8 422 52.8
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 5.2e-95 352.4 417 50.6
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 5.8e-94 349.0 483 49.9
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 6.4e-93 345.5 515 47.0
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 2.1e-91 340.5 398 54.5
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 2.1e-91 340.5 483 52.4
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 7.8e-91 338.6 383 53.0
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 5.1e-90 335.9 467 48.6
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 8.6e-90 335.1 418 49.0
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 2.5e-89 333.6 474 49.6
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 2.1e-88 330.5 409 51.1
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 2.1e-88 330.5 409 51.1
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 2.4e-87 327.0 473 45.0
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 1.5e-86 324.3 510 49.0
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 2.9e-85 320.1 474 50.0
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 8.4e-85 318.5 304 58.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 4.2e-84 316.2 407 49.6
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 5.4e-84 315.8 482 47.5
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 9.2e-84 315.1 468 48.5
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 3.5e-83 313.2 470 47.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 7.8e-83 312.0 466 44.6
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 1.3e-82 311.2 469 44.3
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-82 311.2 478 49.2
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 2.3e-82 310.5 469 44.3
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 2.3e-82 310.5 470 44.3
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 2.3e-82 310.5 413 47.7
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 3.0e-82 310.1 469 44.1
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.1e-82 309.3 436 47.0
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.5e-81 307.0 470 44.3
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 3.3e-81 306.6 470 44.0
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 4.3e-81 306.2 482 49.4
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 5.6e-81 305.8 471 49.5
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 5.6e-81 305.8 478 49.2
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.3e-80 304.7 414 48.6
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 2.1e-80 303.9 469 49.0
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 6.2e-80 302.4 474 44.7
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 8.1e-80 302.0 499 44.9
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.1e-79 301.6 420 47.9
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.8e-79 300.8 477 48.6
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 2.4e-79 300.4 469 43.1
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.4e-79 300.4 419 48.2
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 2.4e-79 300.4 495 46.5
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 3.1e-79 300.1 413 46.5
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 4.0e-79 299.7 466 43.6
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 5.3e-79 299.3 429 47.3
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 1.2e-78 298.1 471 46.7
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 2.6e-78 297.0 365 50.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 3.4e-78 296.6 469 42.6
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 4.4e-78 296.2 421 47.5
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 5.8e-78 295.8 434 45.2
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 9.9e-78 295.0 421 47.0
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.2e-77 293.9 421 47.3
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 3.8e-77 293.1 423 47.3
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 8.4e-77 292.0 367 50.4
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.4e-76 291.2 423 47.0
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 1.9e-76 290.8 423 45.9
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 5.4e-76 289.3 471 46.9
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 3.5e-75 286.6 365 49.6
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 4.6e-75 286.2 416 44.0
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.0e-75 285.8 471 43.7
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 6.0e-75 285.8 363 50.4
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 7.8e-75 285.4 474 48.1
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 1.0e-74 285.0 466 47.4
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.7e-74 284.3 426 46.0
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.3e-74 283.9 412 46.1
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 4.3e-73 279.6 395 46.8
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 9.6e-73 278.5 471 43.5
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 1.6e-72 277.7 422 45.5
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 1.4e-71 274.6 474 44.1
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 1.5e-70 271.2 421 45.1
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 2.6e-70 270.4 425 46.8
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 3.4e-70 270.0 471 42.7
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 5.8e-70 269.2 446 42.4
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 9.9e-70 268.5 409 44.3
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 3.8e-69 266.5 461 47.3
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 4.9e-69 266.2 435 43.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 4.9e-69 266.2 424 43.9
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 5.4e-68 262.7 477 41.5
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 1.6e-67 261.2 407 44.7
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 2.1e-67 260.8 407 44.7
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 4.6e-67 259.6 422 44.1
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 4.6e-67 259.6 409 44.5
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 1.0e-66 258.5 379 45.4
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 1.3e-66 258.1 328 50.0
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 1.3e-66 258.1 198 69.7
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 3.0e-66 256.9 254 56.3
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 3.7e-64 250.0 473 40.4
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.1e-63 248.4 423 42.1
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 2.4e-63 247.3 394 42.9
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 7.1e-60 235.7 204 62.3
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 7.1e-60 235.7 309 47.2
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.3e-58 231.5 493 37.5
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.3e-58 231.5 493 37.5
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.8e-53 213.4 424 41.0
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 3.8e-53 213.4 139 75.5
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 4.9e-53 213.0 451 37.7
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 1.4e-52 211.5 261 52.1
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 1.9e-52 211.1 410 41.0
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 7.4e-49 199.1 112 87.5
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 1.4e-44 184.9 349 43.3
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.6e-43 180.3 133 69.9
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 3.6e-43 180.3 133 69.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.0e-42 178.7 101 85.1
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 8.8e-42 175.6 358 41.9
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.0e-38 164.5 345 38.0
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 3.4e-38 163.7 115 75.7
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 2.2e-37 161.0 95 80.0
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 8.2e-32 142.5 140 53.6
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 1.1e-31 142.1 176 46.0
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 2.6e-30 137.5 76 88.2
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 7.2e-28 129.4 347 32.9
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 8.8e-26 122.5 306 34.3
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 2.2e-24 117.9 122 50.8
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 1.1e-23 115.5 64 85.9
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.4e-20 102.4 287 34.8
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 1.0e-18 99.0 66 74.2
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.4e-18 98.6 106 50.9
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.0e-18 97.4 244 37.7
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 2.8e-16 90.9 61 72.1
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 8.3e-16 89.4 105 42.9
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.4e-15 87.8 81 53.1
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 7.0e-15 86.3 68 67.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 2.9e-13 80.9 92 48.9
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.6e-11 75.1 35 97.1
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 2.6e-09 67.8 40 72.5
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 5.7e-09 66.6 67 55.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.7e-08 65.1 52 55.8
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.3e-08 63.2 105 35.2
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 1.4e-07 62.0 111 34.2
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 2.4e-07 61.2 88 43.2
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 3.1e-07 60.8 60 46.7
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 5.4e-07 60.1 57 49.1
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 5.4e-07 60.1 57 49.1
Ca_31319_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 3.5e-06 57.4 77 44.2
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 7.7e-06 56.2 74 41.9


User provided reference genes

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