Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 2.6e-198 695.3 373 100.0
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.1e-163 577.8 358 86.6
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.3e-160 570.1 373 82.3
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.2e-158 563.5 375 80.8
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 1.9e-116 423.3 376 62.2
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 3.6e-115 419.1 378 61.6
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.4e-113 412.1 366 62.3
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 3.7e-112 409.1 376 62.8
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 6.4e-112 408.3 376 59.6
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 6.4e-112 408.3 366 61.7
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 3.2e-111 406.0 375 60.3
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 4.1e-111 405.6 375 60.8
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 2.0e-110 403.3 373 60.1
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.6e-110 402.1 368 60.3
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 1.0e-109 401.0 365 60.8
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.3e-109 400.6 368 60.1
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 3.9e-109 399.1 375 60.5
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 6.6e-109 398.3 368 60.1
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 1.1e-108 397.5 368 59.8
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 2.5e-108 396.4 362 60.5
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 2.5e-108 396.4 365 61.6
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 2.5e-108 396.4 365 61.6
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 2.1e-107 393.3 380 59.5
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 8.0e-107 391.3 387 60.7
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 1.4e-106 390.6 377 58.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 1.8e-106 390.2 382 59.2
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 5.2e-106 388.7 368 58.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.6e-105 386.3 380 59.5
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.8e-105 385.2 407 56.0
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 7.5e-105 384.8 384 56.8
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.3e-104 384.0 368 57.9
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.9e-104 382.9 368 57.9
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-103 379.8 368 57.6
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 7.0e-103 378.3 339 61.7
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 6.0e-102 375.2 371 58.2
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 1.1e-100 370.9 378 53.7
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 4.3e-100 369.0 370 57.6
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.3e-100 369.0 368 56.2
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.1e-99 366.7 368 56.2
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 5.2e-98 362.1 322 63.0
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 5.8e-97 358.6 375 54.9
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 6.4e-96 355.1 365 57.3
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 1.4e-95 354.0 380 55.3
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 1.9e-95 353.6 337 58.2
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 7.1e-95 351.7 329 59.9
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 1.6e-94 350.5 321 61.4
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 2.1e-94 350.1 377 54.9
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 1.0e-93 347.8 377 54.9
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 3.0e-93 346.3 353 56.9
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 1.9e-92 343.6 374 53.2
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 1.6e-91 340.5 370 55.1
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.6e-91 340.5 378 54.2
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 2.1e-91 340.1 375 52.8
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 2.8e-91 339.7 377 53.6
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 3.6e-91 339.3 375 53.3
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 3.6e-91 339.3 381 51.4
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 4.7e-91 339.0 368 54.1
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 2.4e-90 336.7 365 51.2
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 3.1e-90 336.3 373 53.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 2.6e-89 333.2 374 54.5
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 1.3e-88 330.9 373 53.4
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 3.8e-88 329.3 383 53.5
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 6.4e-88 328.6 361 52.9
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.1e-87 327.8 369 53.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 1.4e-87 327.4 360 51.4
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 2.4e-87 326.6 376 50.8
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 7.1e-87 325.1 376 51.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 1.2e-86 324.3 376 51.6
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 6.0e-86 322.0 374 50.8
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 6.0e-86 322.0 315 58.1
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.3e-85 320.1 367 54.2
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 2.3e-85 320.1 360 51.4
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.9e-84 317.0 372 52.2
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 1.2e-83 314.3 367 52.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 1.2e-83 314.3 367 49.3
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 3.6e-83 312.8 359 51.0
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 6.2e-83 312.0 376 49.2
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.1e-82 311.2 365 53.4
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 1.1e-82 311.2 367 52.0
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.4e-82 310.8 367 50.4
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.4e-82 310.8 367 50.4
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 1.8e-82 310.5 364 49.2
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 1.8e-82 310.5 357 51.0
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 2.4e-82 310.1 327 55.4
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 3.1e-82 309.7 378 49.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 5.2e-82 308.9 371 52.8
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 9.0e-82 308.1 365 49.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 1.2e-81 307.8 367 49.6
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 5.8e-81 305.4 381 51.2
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.7e-80 303.9 377 50.1
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 3.8e-80 302.8 364 47.8
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 6.4e-80 302.0 366 48.4
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 8.4e-80 301.6 384 51.0
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 8.4e-80 301.6 370 47.6
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 2.4e-79 300.1 362 49.2
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 3.2e-79 299.7 364 49.2
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 3.2e-79 299.7 362 50.0
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 4.2e-79 299.3 364 48.9
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 4.2e-79 299.3 366 49.5
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 4.2e-79 299.3 366 49.5
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 5.4e-79 298.9 365 49.3
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-78 297.4 362 49.2
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 2.7e-78 296.6 328 54.6
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 1.3e-77 294.3 364 49.2
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 1.7e-77 293.9 303 53.8
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 3.9e-77 292.7 356 49.7
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 6.6e-77 292.0 366 47.8
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 8.7e-77 291.6 362 48.6
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.1e-75 287.0 369 47.2
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.1e-75 287.0 369 47.2
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 2.8e-75 286.6 405 47.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 6.2e-75 285.4 368 47.3
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 6.2e-75 285.4 368 47.3
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.4e-74 284.3 368 47.0
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 6.9e-74 282.0 364 47.3
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 4.9e-72 275.8 349 47.6
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.9e-71 273.9 381 43.6
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.6e-70 270.8 382 44.0
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 7.9e-70 268.5 332 47.9
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 2.5e-68 263.5 333 50.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 3.7e-67 259.6 331 44.4
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 3.7e-67 259.6 292 52.1
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 5.3e-66 255.8 347 45.2
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.3e-61 241.1 368 42.4
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 8.7e-61 238.4 271 49.4
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 1.1e-60 238.0 350 41.4
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 6.0e-54 215.7 331 41.7
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 3.9e-53 213.0 384 40.4
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 5.3e-50 202.6 198 57.6
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.0e-49 200.7 280 43.2
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 2.4e-34 150.6 131 67.2
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 7.0e-34 149.1 136 63.2
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-29 134.0 172 44.2
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.4e-28 129.8 386 31.6
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.3e-27 128.3 139 46.8
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 6.3e-27 125.9 394 29.2
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.1e-26 122.1 131 48.1
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 4.5e-25 119.8 261 34.9
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 1.3e-24 118.2 126 48.4
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 1.5e-23 114.8 265 34.7
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.5e-23 114.0 152 46.1
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 1.2e-22 111.7 376 26.9
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 1.6e-22 111.3 101 53.5
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 8.0e-22 109.0 380 26.3
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 8.8e-21 105.5 377 28.4
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 4.4e-20 103.2 286 30.1
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 9.4e-15 85.5 131 37.4
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 1.5e-12 78.2 61 62.3
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 9.8e-12 75.5 97 48.5
Peaxi162Scf00598g00061 Petunia axillaris HOM05D002428 ORTHO05D005085 4.8e-11 73.2 269 26.8
Cre17.g708350 Chlamydomonas reinhardtii HOM05D002428 ORTHO05D005085 8.3e-11 72.4 366 25.7
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.1e-10 70.1 66 50.0
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.1e-10 70.1 66 50.0
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.1e-07 62.0 56 53.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 4.2e-07 60.1 56 53.6
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 9.5e-07 58.9 56 51.8
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 1.2e-06 58.5 56 53.6
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 3.6e-06 57.0 82 40.2


User provided reference genes

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