Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1969.1 1017 100.0
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1660.2 1007 86.1
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1589.7 1011 83.0
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1353.6 1002 70.2
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1263.1 1012 64.8
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1256.1 1005 65.8
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1239.2 958 66.1
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1221.8 1056 61.7
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1209.5 1022 62.6
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1202.2 1010 62.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 0.0e+00 1201.8 1054 61.3
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1198.3 1010 62.1
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1197.6 943 65.9
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1191.0 1015 62.2
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1179.1 1016 62.2
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1171.4 1015 61.8
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 0.0e+00 1170.2 948 64.1
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 0.0e+00 1168.3 1011 61.8
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1162.5 1008 61.4
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1147.5 1008 60.7
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1121.7 1017 59.2
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1100.1 1016 58.1
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 0.0e+00 1098.6 903 63.9
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1097.0 1027 58.3
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1095.5 1016 58.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1095.5 1021 57.4
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1094.3 1016 58.4
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 1.1e-307 1060.1 880 62.0
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 7.1e-307 1057.4 1009 55.4
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.4e-302 1043.1 1022 55.3
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 6.0e-298 1027.7 1011 55.0
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.8e-294 1016.1 892 59.3
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.0e-294 1015.0 1042 55.3
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 1.1e-291 1006.9 1024 53.5
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 4.6e-290 1001.5 1006 52.9
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 3.0e-289 998.8 1070 52.7
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 2.8e-287 992.3 1026 52.3
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 6.3e-287 991.1 967 54.6
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 1.7e-284 983.0 1007 53.5
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 2.5e-283 979.2 971 54.5
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 3.2e-283 978.8 1022 52.7
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 1.6e-282 976.5 1040 51.9
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 2.7e-282 975.7 1014 51.7
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 3.6e-282 975.3 1005 52.7
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.4e-281 973.4 980 53.5
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.8e-281 973.0 1053 51.2
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 3.9e-281 971.8 1008 50.5
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 6.3e-279 964.5 986 52.4
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 8.2e-279 964.1 1008 51.9
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 2.4e-278 962.6 1006 50.7
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 2.4e-278 962.6 1007 50.9
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 6.5e-276 954.5 998 51.5
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 1.9e-275 953.0 1033 51.2
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 5.5e-275 951.4 988 51.4
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 5.1e-273 944.9 1009 51.6
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.7e-268 929.9 996 50.9
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 2.5e-267 926.0 966 53.2
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.1e-264 917.1 834 58.4
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 2.6e-264 916.0 994 50.9
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 5.7e-264 914.8 1028 49.2
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 7.0e-262 907.9 985 50.9
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 3.5e-261 905.6 996 49.6
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 4.5e-261 905.2 989 50.6
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 6.5e-260 901.4 998 49.1
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 1.2e-256 890.6 996 49.4
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 1.2e-256 890.6 997 49.1
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 2.6e-256 889.4 903 52.7
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 7.5e-256 887.9 996 49.3
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 9.7e-256 887.5 1012 48.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.3e-255 887.1 896 53.6
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 6.3e-255 884.8 1018 48.2
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.4e-254 883.6 903 51.8
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.8e-254 883.2 1010 48.4
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 3.1e-254 882.5 1008 48.6
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 5.3e-254 881.7 991 49.0
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.2e-253 880.6 914 49.6
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 4.2e-251 872.1 1012 48.8
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.6e-250 870.2 925 52.5
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 2.1e-250 869.8 993 48.1
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 3.4e-248 862.4 769 57.7
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 2.7e-245 852.8 906 51.7
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 9.5e-243 844.3 882 51.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.5e-240 837.0 1006 47.4
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 7.3e-235 818.1 937 49.4
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 2.1e-234 816.6 1026 45.4
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 1.5e-232 810.4 1005 44.8
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 3.4e-232 809.3 660 63.8
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.3e-231 807.4 1013 45.1
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.9e-231 806.2 1039 46.7
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 7.0e-230 801.6 1046 46.4
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.2e-221 774.2 709 58.5
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 6.6e-220 768.5 900 48.0
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 6.8e-217 758.4 816 49.8
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 2.6e-208 729.9 894 48.5
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 1.3e-199 701.0 1012 40.9
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.9e-191 672.5 940 44.6
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 2.1e-189 667.2 832 43.6
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 7.9e-189 665.2 1044 39.2
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.0e-188 664.8 679 53.3
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 1.7e-146 524.6 924 36.5
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 5.5e-142 509.6 1008 34.1
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 5.6e-70 270.4 645 32.1
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 1.5e-62 245.7 1050 24.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.1e-61 241.9 270 47.4
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.3e-58 232.6 323 43.3
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 6.5e-58 230.3 191 64.4
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.4e-52 212.6 685 28.0
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 3.0e-39 168.3 660 25.5
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 1.6e-35 156.0 134 63.4
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 2.0e-27 129.0 634 25.4
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 1.5e-25 122.9 136 50.0
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 6.5e-18 97.4 890 20.3
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 1.2e-14 86.7 117 35.9
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 4.0e-07 61.6 95 37.9
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 9.8e-06 57.0 76 47.4


User provided reference genes

Program Settings