Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 5.3e-143 511.1 284 100.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.7e-131 472.2 284 92.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 6.3e-128 461.1 284 90.5
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.1e-127 458.4 283 90.1
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 3.5e-126 455.3 286 87.8
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 3.2e-124 448.7 286 88.5
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 7.2e-124 447.6 265 92.1
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.3e-122 442.6 286 86.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.5e-121 439.9 284 87.0
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 4.4e-121 438.3 286 86.0
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 4.4e-121 438.3 285 85.6
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 5.7e-121 438.0 284 87.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 7.5e-121 437.6 285 86.0
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.7e-120 435.3 285 88.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.7e-120 435.3 288 85.1
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 4.8e-120 434.9 238 87.4
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 8.2e-120 434.1 286 86.4
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.1e-119 433.7 286 85.3
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.1e-119 433.7 286 85.3
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 3.1e-119 432.2 306 82.7
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 5.3e-119 431.4 284 84.5
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 7.0e-119 431.0 285 84.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 7.0e-119 431.0 285 85.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.6e-118 429.9 284 84.9
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 2.6e-118 429.1 296 82.8
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 4.5e-118 428.3 285 84.9
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 7.7e-118 427.6 286 85.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.7e-117 426.4 286 83.9
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 6.5e-117 424.5 285 83.9
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 1.5e-116 423.3 285 85.3
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 3.2e-116 422.2 284 85.2
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 3.2e-116 422.2 286 82.9
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 3.2e-116 422.2 285 83.9
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.2e-116 421.8 285 82.8
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 1.2e-115 420.2 286 83.9
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.6e-115 419.9 288 84.0
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 2.7e-115 419.1 285 81.1
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 3.6e-115 418.7 285 82.5
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 6.1e-115 417.9 286 83.2
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.4e-114 416.8 286 82.2
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 1.4e-114 416.8 285 80.7
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 6.8e-114 414.5 286 82.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 8.8e-114 414.1 288 83.0
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 3.4e-113 412.1 285 82.8
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.2e-112 409.5 221 87.3
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.8e-111 406.4 282 84.8
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.4e-111 406.0 286 80.4
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.4e-111 404.8 284 81.3
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 7.0e-111 404.4 285 79.6
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.3e-109 400.2 288 80.6
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.3e-109 400.2 238 81.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 8.5e-109 397.5 284 80.6
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.1e-108 397.1 284 80.6
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 2.1e-107 392.9 287 80.1
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 3.6e-107 392.1 230 81.7
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.6e-107 392.1 288 79.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 6.1e-107 391.3 285 80.0
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 1.0e-106 390.6 285 80.0
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 4.0e-106 388.7 283 80.2
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 4.0e-106 388.7 236 79.2
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 5.2e-106 388.3 238 77.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 8.8e-106 387.5 288 79.5
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 1.5e-105 386.7 288 78.8
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.5e-105 386.7 286 79.7
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 2.0e-105 386.3 284 79.9
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.6e-105 386.0 233 79.4
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 9.8e-105 384.0 240 78.3
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.2e-104 382.9 285 77.9
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-104 382.1 286 76.9
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 3.7e-104 382.1 238 76.5
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 6.3e-104 381.3 240 79.2
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 8.3e-104 380.9 241 78.0
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.1e-103 380.6 287 78.0
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.4e-103 378.3 237 78.1
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 5.4e-103 378.3 244 77.5
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 1.6e-102 376.7 244 77.0
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.0e-102 376.3 238 77.3
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 7.7e-102 374.4 210 86.7
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.0e-101 374.0 288 76.7
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 1.3e-101 373.6 234 77.8
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.9e-101 372.5 241 77.6
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 6.6e-101 371.3 239 77.0
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.1e-100 370.5 238 77.3
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.5e-100 370.2 272 69.1
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 1.9e-100 369.8 287 73.9
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 5.6e-100 368.2 239 76.6
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 1.6e-99 366.7 236 76.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.6e-99 366.7 260 72.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 3.6e-99 365.5 341 66.6
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 6.1e-99 364.8 287 75.3
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 1.8e-98 363.2 285 76.5
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 5.2e-98 361.7 239 72.4
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 5.7e-97 358.2 209 79.4
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.9e-96 355.1 233 72.5
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.2e-95 352.4 236 71.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.2e-95 352.4 285 74.4
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 4.6e-94 348.6 242 74.0
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 5.9e-94 348.2 220 75.5
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.1e-92 344.0 286 74.5
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.1e-91 339.7 285 71.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.7e-91 338.6 220 71.8
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.3e-90 336.3 291 72.2
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 3.1e-90 335.9 237 69.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 8.9e-90 334.3 243 83.1
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 1.2e-89 334.0 284 72.2
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.1e-87 327.4 244 70.5
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.2e-87 325.9 231 84.4
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 4.1e-87 325.5 244 71.3
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 5.4e-87 325.1 287 71.8
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 7.0e-87 324.7 244 70.1
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.2e-86 323.9 246 71.1
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 6.0e-86 321.6 236 68.6
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 1.1e-84 317.4 243 70.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 1.9e-84 316.6 243 69.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 3.3e-84 315.8 242 70.7
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 9.5e-84 314.3 247 68.4
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.2e-83 313.9 245 68.6
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 3.6e-83 312.4 196 80.1
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 1.8e-82 310.1 285 69.1
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.3e-82 309.7 228 80.7
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 3.4e-81 305.8 231 68.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 2.2e-80 303.1 238 66.8
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.6e-75 285.8 195 72.8
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 6.2e-75 285.0 228 76.3
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 3.2e-71 272.7 217 65.9
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 6.0e-70 268.5 241 60.6
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.3e-69 266.5 234 62.0
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 3.9e-69 265.8 237 61.6
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 1.4e-63 247.3 198 64.6
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 3.2e-63 246.1 241 54.4
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 9.9e-57 224.6 244 52.0
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 4.9e-48 195.7 244 61.5
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 2.4e-47 193.4 139 66.2
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 2.8e-43 179.9 131 68.7
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.3e-37 160.2 250 41.6
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 8.2e-35 151.8 247 43.3
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 1.9e-31 140.6 240 38.8
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.5e-31 140.2 238 38.7
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 3.3e-28 129.8 222 40.5
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 3.3e-28 129.8 185 47.0
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.2e-27 127.1 224 40.2
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 8.2e-27 125.2 224 36.2
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.4e-26 123.6 238 38.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.1e-26 123.2 217 37.3
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 1.2e-25 121.3 227 37.9
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 3.4e-25 119.8 229 37.6
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 5.9e-25 119.0 234 38.0
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 5.0e-24 115.9 231 35.1
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 1.4e-23 114.4 227 35.7
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.9e-23 114.0 231 35.5
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.6e-22 110.9 228 36.4
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 3.6e-22 109.8 53 94.3
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.6e-22 109.8 244 33.2
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.6e-22 109.8 228 33.8
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.6e-22 109.4 227 35.2
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 1.4e-21 107.8 244 35.7
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 1.7e-19 100.9 209 36.8
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.2e-17 94.7 200 35.5
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 1.7e-16 90.9 202 36.1
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 8.5e-16 88.6 56 71.4
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 1.1e-15 88.2 248 33.1
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.2e-15 85.5 46 82.6
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 2.1e-14 84.0 238 30.7
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 3.6e-14 83.2 52 71.2
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 1.8e-13 80.9 170 37.6
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 3.9e-13 79.7 183 34.4
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 2.0e-12 77.4 103 45.6
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 2.8e-11 73.6 153 35.9
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 3.7e-11 73.2 168 33.9
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 7.0e-10 68.9 262 25.6
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 5.9e-09 65.9 51 54.9
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.7e-08 64.3 37 67.6
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 2.2e-08 63.9 48 56.2
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 2.2e-08 63.9 185 31.9
Zm00001eb321720 Zea mays HOM05D004124 ORTHO05D004779 9.4e-07 58.5 57 47.4
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 4.7e-06 56.2 161 31.7


User provided reference genes

Program Settings