Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 9.1e-122 440.3 225 100.0
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.5e-79 299.3 157 96.2
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 7.3e-71 271.2 157 86.6
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 7.3e-71 271.2 157 87.9
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 2.1e-70 269.6 157 85.4
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 4.7e-70 268.5 195 73.8
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 6.2e-70 268.1 157 86.0
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 8.1e-70 267.7 157 84.7
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 1.8e-69 266.5 157 84.7
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 3.1e-69 265.8 157 84.7
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 3.1e-69 265.8 157 85.4
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 3.1e-69 265.8 157 85.4
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 4.0e-69 265.4 157 82.8
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 4.0e-69 265.4 157 84.7
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 4.0e-69 265.4 157 84.1
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 4.0e-69 265.4 157 84.1
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 4.0e-69 265.4 157 82.8
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 5.2e-69 265.0 157 85.4
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 6.8e-69 264.6 157 84.7
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 6.8e-69 264.6 157 84.7
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 6.8e-69 264.6 157 85.4
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 8.9e-69 264.2 157 84.7
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 8.9e-69 264.2 155 85.8
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.2e-68 263.8 157 84.1
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.2e-68 263.8 157 83.4
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 1.2e-68 263.8 157 85.4
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 1.2e-68 263.8 157 84.7
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.2e-68 263.8 157 85.4
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 1.2e-68 263.8 155 84.5
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 1.5e-68 263.5 157 84.1
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 1.5e-68 263.5 157 84.1
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 2.0e-68 263.1 157 84.7
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 2.0e-68 263.1 166 80.7
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 2.0e-68 263.1 157 82.2
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.6e-68 262.7 157 85.4
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 2.6e-68 262.7 157 84.1
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 2.6e-68 262.7 157 84.7
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 2.6e-68 262.7 157 82.8
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 3.4e-68 262.3 157 82.2
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 4.4e-68 261.9 157 83.4
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 5.8e-68 261.5 157 84.1
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 7.6e-68 261.2 157 82.2
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 9.9e-68 260.8 157 82.2
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 9.9e-68 260.8 157 81.5
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 9.9e-68 260.8 157 82.2
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 9.9e-68 260.8 157 83.4
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.3e-67 260.4 157 82.8
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.3e-67 260.4 157 82.8
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 1.7e-67 260.0 157 82.8
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.7e-67 260.0 154 82.5
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 2.2e-67 259.6 157 82.2
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.2e-67 259.6 157 82.8
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 2.2e-67 259.6 157 82.8
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 2.9e-67 259.2 157 82.8
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.9e-67 259.2 167 78.4
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.9e-67 259.2 158 83.5
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 2.9e-67 259.2 158 83.5
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 3.8e-67 258.8 157 80.9
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 3.8e-67 258.8 157 83.4
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 3.8e-67 258.8 154 82.5
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 4.9e-67 258.5 157 80.9
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.4e-67 258.1 158 82.9
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 8.4e-67 257.7 157 80.9
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 8.4e-67 257.7 157 81.5
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 8.4e-67 257.7 157 80.9
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 8.4e-67 257.7 158 82.3
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 8.4e-67 257.7 154 81.8
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 1.1e-66 257.3 157 80.9
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.4e-66 256.9 158 82.3
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.4e-66 256.9 158 81.6
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 1.9e-66 256.5 158 81.6
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.9e-66 256.5 157 80.9
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 2.4e-66 256.1 157 80.3
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 2.4e-66 256.1 157 80.3
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 2.4e-66 256.1 157 80.3
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 2.4e-66 256.1 157 80.3
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 3.2e-66 255.8 157 82.2
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 5.4e-66 255.0 157 81.5
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 9.3e-66 254.2 158 81.6
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 1.2e-65 253.8 157 80.9
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.6e-65 253.4 175 75.4
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 2.1e-65 253.1 157 80.9
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 2.1e-65 253.1 157 80.9
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 2.7e-65 252.7 157 78.3
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.7e-64 250.0 157 77.7
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 3.9e-64 248.8 190 70.5
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.1e-63 247.3 157 80.3
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 1.9e-63 246.5 163 77.9
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.9e-63 246.5 157 77.7
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 9.6e-63 244.2 157 77.1
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.6e-62 243.4 157 79.0
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.6e-62 243.4 157 74.5
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.8e-61 240.0 157 76.4
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.8e-61 240.0 157 76.4
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 4.0e-61 238.8 157 74.5
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.3e-59 233.8 155 76.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 1.9e-58 229.9 155 74.2
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 3.9e-56 222.2 157 73.9
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 5.1e-56 221.9 157 72.0
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 2.5e-55 219.5 157 68.2
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 1.1e-53 214.2 143 74.8
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.0e-53 212.2 134 78.4
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 7.9e-49 198.0 157 66.2
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.8e-48 196.8 168 60.7
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 1.8e-48 196.8 168 60.7
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 5.6e-47 191.8 158 62.7
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 1.4e-45 187.2 156 60.9
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.2e-44 184.1 117 80.3
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.2e-41 174.1 103 82.5
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.4e-29 134.0 138 50.0
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.1e-21 105.9 133 42.9
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 1.4e-16 90.9 142 41.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 2.3e-16 90.1 162 37.0
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 3.1e-13 79.7 62 66.1
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 4.8e-06 55.8 117 38.5


User provided reference genes

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