Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.0e-163 577.0 290 100.0
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 7.1e-135 484.2 309 80.9
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 1.0e-133 480.3 297 82.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 4.2e-111 405.2 295 69.2
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.8e-109 399.8 288 68.8
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 3.9e-109 398.7 294 69.0
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 5.1e-109 398.3 289 69.6
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.9e-108 396.4 289 68.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.9e-108 396.4 286 73.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 4.3e-108 395.2 289 69.9
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 7.4e-108 394.4 290 68.3
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 9.6e-108 394.0 289 69.2
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 4.8e-107 391.7 294 67.0
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 6.3e-107 391.3 284 69.0
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.0e-105 386.3 293 67.2
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 6.5e-104 381.3 287 66.6
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 8.5e-104 380.9 316 64.6
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 2.7e-102 375.9 299 63.5
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.0e-101 374.0 302 64.2
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.3e-101 373.6 296 66.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 3.0e-101 372.5 291 64.9
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.0e-101 372.5 295 64.7
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.9e-101 372.1 288 66.7
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 6.7e-101 371.3 289 64.7
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.1e-100 370.5 290 65.2
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.7e-100 368.2 278 67.3
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 7.4e-100 367.9 290 66.9
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.8e-99 365.9 297 62.6
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.8e-99 365.2 290 65.5
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.8e-98 363.2 281 65.8
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.4e-98 362.8 284 65.1
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 3.1e-98 362.5 296 64.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 5.3e-98 361.7 312 63.8
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 5.3e-98 361.7 326 61.7
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 6.9e-98 361.3 281 65.1
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 6.9e-98 361.3 290 63.4
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 9.0e-98 360.9 287 65.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.5e-97 360.1 296 65.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 2.0e-97 359.8 279 65.2
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.4e-97 359.0 281 63.7
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 7.7e-97 357.8 299 64.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.3e-96 357.1 280 64.3
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.3e-96 357.1 300 65.0
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 1.7e-96 356.7 297 63.6
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.8e-96 355.5 278 65.8
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.9e-95 353.2 296 63.2
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.7e-94 349.4 284 64.8
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 3.6e-94 349.0 302 61.9
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 4.6e-94 348.6 291 61.5
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 6.1e-94 348.2 302 60.6
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 7.9e-94 347.8 299 61.2
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 7.9e-94 347.8 302 60.3
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.0e-93 347.4 287 63.8
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.8e-93 346.7 287 62.7
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.8e-93 346.7 290 62.4
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.8e-93 346.7 294 62.9
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 6.7e-93 344.7 217 76.5
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-92 344.0 285 63.5
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.0e-92 343.2 271 64.9
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 3.3e-92 342.4 303 60.1
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.7e-91 340.1 302 60.6
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.2e-91 339.7 296 59.5
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 3.7e-91 339.0 289 60.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.7e-91 339.0 269 64.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.7e-91 339.0 289 61.9
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 4.8e-91 338.6 296 61.1
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.5e-89 333.6 289 61.9
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.8e-88 328.9 289 61.6
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 6.5e-88 328.2 301 59.1
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.1e-87 327.4 287 58.5
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.6e-86 323.6 286 58.7
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 3.6e-86 322.4 294 57.8
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 4.7e-86 322.0 263 64.6
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 8.8e-85 317.8 270 63.7
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 2.0e-84 316.6 296 56.4
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.3e-83 313.9 272 62.1
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 2.2e-83 313.2 291 57.7
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.8e-83 312.8 283 62.2
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 1.8e-82 310.1 287 58.9
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 4.5e-81 305.4 286 58.7
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 2.2e-80 303.1 282 59.6
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.3e-77 293.1 338 50.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.0e-77 292.7 290 54.5
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 2.0e-76 290.0 292 53.1
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 8.2e-75 284.6 317 52.4
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 7.0e-74 281.6 152 90.1
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.3e-72 277.3 243 62.6
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.1e-71 274.2 290 55.2
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.6e-70 270.4 172 75.0
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.1e-70 270.0 176 76.7
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.2e-68 264.2 178 70.8
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.8e-66 256.9 297 50.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 2.4e-66 256.5 284 52.8
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.2e-65 254.2 268 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 9.5e-63 244.6 293 47.1
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 8.0e-62 241.5 281 53.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-61 240.4 160 71.9
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-58 230.3 283 45.6
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.4e-58 229.9 274 50.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 3.3e-55 219.5 289 47.4
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 4.7e-54 215.7 267 45.7
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 5.2e-53 212.2 277 44.4
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 5.2e-53 212.2 118 83.9
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 5.2e-53 212.2 118 83.9
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.2e-52 211.1 290 45.9
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.5e-52 210.7 308 44.8
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.0e-49 200.3 281 42.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 4.6e-49 199.1 269 45.4
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.5e-47 194.1 285 41.1
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.0e-45 188.0 102 87.3
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.3e-45 186.8 174 60.3
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 8.9e-45 184.9 290 43.4
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.5e-44 184.1 290 43.8
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.2e-43 180.3 290 42.4
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.4e-43 178.7 185 54.6
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.4e-42 177.6 215 49.3
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.9e-42 177.2 279 38.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.0e-41 173.7 102 77.5
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.5e-41 172.9 210 47.6
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.1e-37 159.8 95 80.0
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.2e-37 159.1 111 65.8
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.2e-36 157.9 290 38.3
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.8e-36 155.6 155 56.1
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 9.8e-36 154.8 205 45.4
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 3.3e-31 139.8 165 50.3
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.1e-30 137.1 193 45.6
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.4e-29 134.4 117 63.2
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.1e-26 122.1 102 58.8
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.3e-24 117.1 154 45.5
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 6.6e-24 115.5 154 45.5
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 9.9e-20 101.7 55 85.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 4.2e-18 96.3 50 90.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.3e-15 86.3 50 76.0
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.0e-13 78.6 110 40.9
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 3.2e-10 70.1 74 52.7
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.0e-08 63.5 71 47.9
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 5.1e-08 62.8 98 38.8
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.3e-07 60.1 104 41.3
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 5.6e-07 59.3 62 53.2
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 1.6e-06 57.8 60 53.3
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 3.7e-06 56.6 50 62.0


User provided reference genes

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