Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.5e-98 361.7 193 100.0
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 8.5e-76 287.3 189 83.6
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-54 216.5 191 67.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.4e-54 216.1 187 67.9
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.2e-51 205.3 197 62.9
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 9.4e-51 204.1 193 65.8
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.4e-49 200.3 200 61.5
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-48 197.2 193 61.1
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 1.2e-48 197.2 197 60.4
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 1.5e-48 196.8 192 61.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.4e-48 195.7 198 61.1
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.1e-46 190.7 200 58.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.8e-46 189.9 197 59.9
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.4e-46 189.5 203 59.1
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 9.1e-46 187.6 206 56.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 6.5e-44 181.4 193 56.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 8.5e-44 181.0 195 57.4
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.2e-43 179.1 193 56.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 4.2e-43 178.7 193 56.0
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 4.2e-43 178.7 192 57.8
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 3.6e-42 175.6 193 58.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.0e-41 174.1 208 51.4
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.0e-41 172.2 195 56.9
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.2e-41 171.8 197 53.8
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 8.8e-41 171.0 213 51.2
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.2e-40 170.6 198 53.5
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-40 170.6 194 55.2
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 2.0e-40 169.9 197 57.4
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.4e-40 169.1 202 54.0
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 7.5e-40 167.9 197 56.9
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.2e-39 166.4 196 51.5
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 2.8e-39 166.0 191 55.0
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 3.7e-39 165.6 194 54.6
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.8e-38 163.3 209 49.3
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.8e-38 163.3 196 51.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.4e-38 162.9 204 50.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.1e-38 162.5 201 52.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 5.4e-38 161.8 208 50.0
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 7.0e-38 161.4 200 52.0
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-37 160.6 193 52.3
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.2e-37 160.6 193 52.3
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-37 160.6 193 52.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 1.2e-37 160.6 190 52.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 4.5e-37 158.7 193 52.3
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.9e-37 158.3 194 53.6
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.9e-37 158.3 194 53.6
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 7.7e-37 157.9 196 51.5
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.7e-37 157.9 194 55.2
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 7.7e-37 157.9 194 55.2
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.0e-36 157.5 193 52.3
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.3e-36 157.1 205 48.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.3e-36 157.1 181 56.4
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-36 156.4 194 54.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 2.3e-36 156.4 192 53.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 2.3e-36 156.4 222 45.5
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 3.8e-36 155.6 193 50.8
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.0e-36 155.2 199 54.8
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 5.0e-36 155.2 193 52.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 6.6e-36 154.8 193 53.4
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 8.6e-36 154.5 196 53.1
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 1.5e-35 153.7 196 53.1
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 1.9e-35 153.3 207 46.9
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.2e-35 151.4 200 52.0
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 7.2e-35 151.4 215 47.9
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 7.2e-35 151.4 205 47.8
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.6e-34 150.2 197 50.3
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.1e-34 149.8 205 48.8
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.8e-34 149.4 194 52.6
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.8e-34 149.4 209 50.2
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 3.6e-34 149.1 196 50.5
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 4.7e-34 148.7 202 52.0
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.1e-34 148.3 204 49.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 8.0e-34 147.9 204 48.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 8.0e-34 147.9 198 48.5
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.4e-33 147.1 194 51.0
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.8e-33 146.7 215 49.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.0e-33 146.0 191 47.6
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.0e-33 146.0 208 46.2
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 5.2e-33 145.2 212 50.9
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 5.2e-33 145.2 210 46.2
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-32 143.7 196 51.5
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.0e-32 143.3 196 50.5
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 3.4e-32 142.5 197 48.2
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 4.4e-32 142.1 173 52.0
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.7e-32 141.7 208 46.2
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 7.5e-32 141.4 192 47.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.5e-32 141.4 225 48.4
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 9.8e-32 141.0 170 50.0
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 9.8e-32 141.0 212 45.8
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.3e-31 140.6 197 50.8
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 1.3e-31 140.6 192 47.9
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.7e-31 139.0 208 46.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 4.9e-31 138.7 203 46.3
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.3e-31 138.3 191 47.1
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 5.4e-30 135.2 210 43.8
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.4e-30 135.2 204 46.1
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 7.0e-30 134.8 211 47.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.2e-29 134.0 186 47.8
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 2.0e-29 133.3 213 45.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.5e-29 132.5 191 48.2
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 4.6e-29 132.1 189 49.7
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.9e-29 131.7 199 43.7
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 2.3e-28 129.8 213 41.8
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.9e-28 129.4 199 44.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.9e-28 129.0 201 46.3
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 5.0e-28 128.6 199 45.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 6.6e-28 128.3 201 45.3
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 6.6e-28 128.3 199 44.7
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-27 127.5 170 49.4
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-27 126.7 188 46.3
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 9.5e-27 124.4 173 48.0
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.8e-26 122.9 166 48.8
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.6e-26 122.5 202 42.6
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 3.6e-26 122.5 190 47.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 8.0e-26 121.3 208 39.9
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.0e-25 120.9 238 39.1
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.0e-25 120.9 193 45.1
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 4.0e-25 119.0 161 50.9
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.5e-24 117.1 118 55.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 3.4e-24 115.9 202 43.6
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 3.4e-24 115.9 209 41.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 5.8e-24 115.2 205 40.0
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 7.5e-24 114.8 243 35.4
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.3e-23 114.0 215 38.6
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 1.7e-23 113.6 222 39.2
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 4.9e-23 112.1 207 41.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.9e-22 110.2 188 40.4
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-22 109.8 185 41.1
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.0e-22 108.2 180 41.7
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 7.0e-22 108.2 186 41.9
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 7.0e-22 108.2 186 41.9
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 7.0e-22 108.2 186 41.9
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 9.2e-22 107.8 185 40.5
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 9.2e-22 107.8 200 35.5
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.2e-21 107.5 187 40.6
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.2e-21 107.5 175 40.0
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.2e-21 107.5 214 40.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 2.0e-21 106.7 195 41.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.6e-21 105.5 215 37.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 7.8e-21 104.8 193 40.4
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.3e-20 103.2 228 36.4
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.9e-20 102.4 194 42.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 5.0e-20 102.1 178 39.3
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 6.6e-20 101.7 180 40.0
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.6e-20 101.3 77 70.1
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.2e-18 97.4 73 68.5
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.2e-18 97.4 174 42.5
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.6e-18 95.9 178 40.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.6e-18 95.9 198 35.4
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-17 94.0 192 36.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-17 94.0 190 35.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.8e-17 91.7 185 37.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.8e-17 91.7 185 37.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-16 89.7 179 38.0
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.6e-16 89.7 179 38.0
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 4.4e-16 89.0 199 35.2
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.5e-16 88.2 119 47.9
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 9.8e-16 87.8 77 61.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.7e-15 87.0 182 41.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-15 87.0 186 37.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 3.7e-15 85.9 193 40.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 8.3e-15 84.7 184 39.1
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.1e-14 84.3 229 33.2
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 7.1e-14 81.6 154 42.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.7e-13 79.7 206 35.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 9.5e-11 71.2 198 35.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.2e-10 68.6 57 64.9
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.1e-10 68.2 57 64.9
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.1e-09 67.8 193 33.7
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 3.1e-09 66.2 55 65.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.6e-08 63.2 54 61.1
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.4e-08 62.4 127 40.9
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 5.8e-08 62.0 178 27.5
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 4.9e-07 58.9 183 28.4
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.1e-06 55.8 203 30.5


User provided reference genes

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