Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.5e-52 209.1 102 100.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 7.2e-42 173.7 101 86.1
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 9.4e-42 173.3 101 85.1
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 3.0e-40 168.3 98 82.7
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 6.7e-40 167.2 98 82.7
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 4.4e-39 164.5 98 79.6
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 5.7e-39 164.1 98 79.6
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 5.7e-39 164.1 98 79.6
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 7.5e-39 163.7 98 79.6
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 7.5e-39 163.7 98 79.6
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 7.5e-39 163.7 98 79.6
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 9.7e-39 163.3 98 78.6
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 1.3e-38 162.9 98 80.6
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.3e-38 162.9 98 79.6
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.7e-38 162.5 98 77.6
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.7e-38 162.5 98 80.6
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 2.2e-38 162.2 98 78.6
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.8e-38 161.8 98 79.6
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 2.8e-38 161.8 98 78.6
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 2.8e-38 161.8 98 78.6
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 2.8e-38 161.8 98 78.6
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 2.8e-38 161.8 98 81.6
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 3.7e-38 161.4 98 79.6
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 3.7e-38 161.4 98 80.6
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 4.8e-38 161.0 98 76.5
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 4.8e-38 161.0 98 80.6
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 4.8e-38 161.0 98 76.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 6.3e-38 160.6 98 78.6
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 6.3e-38 160.6 98 75.5
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 6.3e-38 160.6 98 78.6
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 8.2e-38 160.2 98 75.5
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 8.2e-38 160.2 98 75.5
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 8.2e-38 160.2 99 77.8
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 8.2e-38 160.2 98 77.6
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 1.4e-37 159.5 98 76.5
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.4e-37 159.5 98 79.6
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 75.5
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 77.6
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 76.5
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 76.5
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 76.5
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 76.5
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 78.6
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 79.6
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.8e-37 159.1 98 76.5
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 3.1e-37 158.3 98 77.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 4.1e-37 157.9 100 75.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 4.1e-37 157.9 98 75.5
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 4.1e-37 157.9 98 76.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 4.1e-37 157.9 98 77.6
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 7.0e-37 157.1 98 75.5
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 7.0e-37 157.1 98 75.5
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 9.1e-37 156.8 98 76.5
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 1.2e-36 156.4 98 76.5
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 1.2e-36 156.4 117 69.2
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.7e-36 155.2 98 78.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 7.7e-36 153.7 98 78.6
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 73.5
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 73.5
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 75.5
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 75.5
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 73.5
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.0e-35 153.3 98 75.5
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 1.3e-35 152.9 98 74.5
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 1.3e-35 152.9 98 75.5
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 1.7e-35 152.5 98 72.4
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 2.2e-35 152.1 98 70.4
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 2.2e-35 152.1 98 74.5
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 3.8e-35 151.4 98 71.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 5.0e-35 151.0 98 70.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 8.5e-35 150.2 98 71.4
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 8.5e-35 150.2 98 71.4
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 8.5e-35 150.2 98 71.4
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.1e-34 149.8 98 72.4
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.9e-34 149.1 98 71.4
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.9e-34 149.1 98 71.4
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.9e-34 149.1 95 72.6
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 2.5e-34 148.7 98 70.4
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 3.2e-34 148.3 98 70.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 3.2e-34 148.3 98 70.4
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 5.5e-34 147.5 98 70.4
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 5.5e-34 147.5 98 71.4
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 5.5e-34 147.5 98 70.4
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 9.4e-34 146.7 98 71.4
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 9.4e-34 146.7 98 71.4
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.6e-33 144.8 98 69.4
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 6.1e-33 144.1 98 70.4
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 6.1e-33 144.1 97 68.0
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 8.0e-33 143.7 98 69.4
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 1.0e-32 143.3 98 66.3
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 1.4e-32 142.9 84 83.3
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.2e-32 141.0 98 69.4
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 6.8e-32 140.6 98 67.3
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 8.8e-32 140.2 98 65.3
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.2e-31 139.8 97 66.0
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 2.0e-31 139.0 98 68.4
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 2.6e-31 138.7 98 67.3
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.8e-29 132.5 98 64.3
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.8e-29 132.5 98 64.3
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 6.5e-27 124.0 98 58.2
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 2.5e-26 122.1 98 56.1
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 5.5e-26 120.9 98 55.1
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 7.2e-26 120.6 98 59.2
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.6e-23 112.1 78 67.9
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 7.8e-20 100.5 98 48.0
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 2.3e-19 99.0 240 31.7
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 7.0e-13 77.4 99 48.5
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 2.3e-11 72.4 44 72.7


User provided reference genes

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