Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G158000 Populus trichocarpa HOM05D005974 ORTHO05D007201 1.6e-236 822.4 413 100.0
Sabra03G0114600 Salix brachista HOM05D005974 ORTHO05D007201 2.3e-219 765.4 389 98.2
Manes.03G060100 Manihot esculenta HOM05D005974 ORTHO05D007201 3.0e-195 685.3 416 83.2
COL.COLO4_20996 Corchorus olitorius HOM05D005974 ORTHO05D007201 2.5e-194 682.2 421 83.1
Ciclev10010686m.g Citrus clementina HOM05D005974 ORTHO05D007201 9.6e-194 680.2 422 82.9
Dinv23389 Davidia involucrata HOM05D005974 ORTHO05D007201 9.9e-191 670.2 418 81.3
Gohir.D06G091000 Gossypium hirsutum HOM05D005974 ORTHO05D007201 8.4e-190 667.2 419 81.1
RcHm_v2.0_Chr6g0306611 Rosa chinensis HOM05D005974 ORTHO05D007201 1.4e-189 666.4 420 79.5
Gorai.010G105000 Gossypium raimondii HOM05D005974 ORTHO05D007201 2.4e-189 665.6 418 81.1
Thecc.09G047600 Theobroma cacao HOM05D005974 ORTHO05D007201 2.4e-189 665.6 417 81.1
Oeu006965.1 Olea europaea HOM05D005974 ORTHO05D007201 2.1e-188 662.5 417 80.3
GSVIVG01035293001 Vitis vinifera HOM05D005974 ORTHO05D007201 2.1e-188 662.5 419 80.2
Gohir.A06G091700 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.6e-188 661.4 419 80.9
MSTRG.14030 Avicennia marina HOM05D005974 ORTHO05D007201 6.0e-188 661.0 417 79.1
Migut.E01538 Erythranthe guttata HOM05D005974 ORTHO05D007201 6.0e-188 661.0 417 78.4
FAN20G0082 Fragaria x ananassa HOM05D005974 ORTHO05D007201 7.9e-188 660.6 421 78.9
TWI63G1635 Tripterygium wilfordii HOM05D005974 ORTHO05D007201 1.3e-187 659.8 420 80.5
CsaV3_3G048470 Cucumis sativus L. HOM05D005974 ORTHO05D007201 3.9e-187 658.3 419 79.5
Cpa.g.sc7.214 Carica papaya HOM05D005974 ORTHO05D007201 6.7e-187 657.5 418 80.9
PGR044G1757 Punica granatum HOM05D005974 ORTHO05D007201 6.7e-187 657.5 418 79.2
FvH4_2g35300 Fragaria vesca HOM05D005974 ORTHO05D007201 3.3e-186 655.2 421 77.9
FAN27G3236 Fragaria x ananassa HOM05D005974 ORTHO05D007201 9.6e-186 653.7 421 77.9
Eucgr.C02982 Eucalyptus grandis HOM05D005974 ORTHO05D007201 1.3e-185 653.3 413 80.4
FAN15G0062 Fragaria x ananassa HOM05D005974 ORTHO05D007201 1.8e-184 649.4 421 77.4
PGR044G0481 Punica granatum HOM05D005974 ORTHO05D007201 2.4e-184 649.0 418 78.5
MELO3C003472.2 Cucumis melo HOM05D005974 ORTHO05D007201 5.3e-184 647.9 428 77.6
MD15G1090800 Malus domestica HOM05D005974 ORTHO05D007201 5.3e-184 647.9 420 77.6
CSS0034694 Camellia sinensis var. sinensis HOM05D005974 ORTHO05D007201 9.0e-184 647.1 413 78.2
CANSAT80G2257 Cannabis sativa HOM05D005974 ORTHO05D007201 1.2e-183 646.7 417 78.4
Atru.chr7.2057 Acer truncatum HOM05D005974 ORTHO05D007201 2.6e-183 645.6 419 80.0
Nitab4.5_0001309g0090 Nicotiana tabacum HOM05D005974 ORTHO05D007201 3.4e-183 645.2 416 77.4
HanXRQChr17g0539061 Helianthus annuus HOM05D005974 ORTHO05D007201 7.6e-183 644.0 416 78.1
HanXRQChr06g0174221 Helianthus annuus HOM05D005974 ORTHO05D007201 1.3e-182 643.3 420 77.4
CiPaw.08G027100 Carya illinoinensis HOM05D005974 ORTHO05D007201 2.2e-182 642.5 422 78.4
Solyc12g095850.2 Solanum lycopersicum HOM05D005974 ORTHO05D007201 6.5e-182 641.0 416 77.9
Cc08_g09880 Coffea canephora HOM05D005974 ORTHO05D007201 1.1e-181 640.2 419 78.3
SGA_v2.0_scaffold169G38660 Striga asiatica HOM05D005974 ORTHO05D007201 7.1e-181 637.5 419 76.4
Sopen12g031750 Solanum pennellii HOM05D005974 ORTHO05D007201 1.2e-180 636.7 416 77.4
EL10Ac5g11988 Beta vulgaris HOM05D005974 ORTHO05D007201 3.5e-180 635.2 412 77.2
PSO832G2350 Papaver somniferum HOM05D005974 ORTHO05D007201 4.6e-180 634.8 423 76.4
arahy.Tifrunner.gnm1.ann1.CL6SAC Arachis hypogaea HOM05D005974 ORTHO05D007201 3.9e-179 631.7 418 76.1
PSO063G5342 Papaver somniferum HOM05D005974 ORTHO05D007201 3.9e-179 631.7 422 76.1
SalBow1G5620 Salvia bowleyana HOM05D005974 ORTHO05D007201 3.9e-179 631.7 446 73.3
Actinidia30286 Actinidia chinensis HOM05D005974 ORTHO05D007201 6.7e-179 630.9 422 75.1
Sc09g0009450 Simmondsia chinensis HOM05D005974 ORTHO05D007201 1.9e-178 629.4 413 76.0
Lsat_1_v5_gn_3_25800 Lactuca sativa HOM05D005974 ORTHO05D007201 5.7e-178 627.9 419 74.9
Aqoxy7G01418 Aquilegia oxysepala HOM05D005974 ORTHO05D007201 7.4e-178 627.5 344 88.4
Glyma.04G086500 Glycine max HOM05D005974 ORTHO05D007201 7.4e-178 627.5 344 87.2
Glyma.06G088000 Glycine max HOM05D005974 ORTHO05D007201 9.6e-178 627.1 407 76.7
CAN.G208.66 Capsicum annuum HOM05D005974 ORTHO05D007201 1.3e-177 626.7 418 75.6
Ca_15573_v3 Cicer arietinum L. HOM05D005974 ORTHO05D007201 1.3e-177 626.7 411 76.2
ECA246G2549 Erigeron canadensis HOM05D005974 ORTHO05D007201 1.3e-177 626.7 416 76.4
Lj1g0014442 Lotus japonicus HOM05D005974 ORTHO05D007201 3.7e-177 625.2 407 76.2
Medtr3g110360 Medicago truncatula HOM05D005974 ORTHO05D007201 4.8e-177 624.8 372 81.5
TPR.G12488 Trifolium pratense HOM05D005974 ORTHO05D007201 8.2e-177 624.0 409 75.3
ClCG11G015070 Citrullus lanatus HOM05D005974 ORTHO05D007201 5.3e-176 621.3 357 85.7
Phvul.009G111700 Phaseolus vulgaris HOM05D005974 ORTHO05D007201 6.9e-176 620.9 407 76.7
Rhsim02G0175300 Rhododendron simsii HOM05D005974 ORTHO05D007201 9.0e-176 620.5 421 74.3
Lalb_Chr08g0242951 Lupinus albus HOM05D005974 ORTHO05D007201 2.2e-174 615.9 365 81.1
THA.LOC104803747 Tarenaya hassleriana HOM05D005974 ORTHO05D007201 2.2e-174 615.9 418 75.4
AUR62018617 Chenopodium quinoa HOM05D005974 ORTHO05D007201 5.5e-173 611.3 343 85.1
Dinv27921 Davidia involucrata HOM05D005974 ORTHO05D007201 5.5e-173 611.3 421 74.1
TAR624G1429 Trochodendron aralioides HOM05D005974 ORTHO05D007201 2.3e-171 605.9 353 85.0
Os01g0743400 Oryza sativa ssp. japonica HOM05D005974 ORTHO05D007201 5.7e-170 601.3 413 74.6
ATR0705G128 Amborella trichopoda HOM05D005974 ORTHO05D007201 1.6e-169 599.7 364 80.5
Sp4g05700 Schrenkiella parvula HOM05D005974 ORTHO05D007201 1.5e-167 593.2 412 73.3
BcaB01g04210 Brassica carinata HOM05D005974 ORTHO05D007201 4.5e-167 591.7 409 73.6
A03p15570 Brassica napus HOM05D005974 ORTHO05D007201 4.5e-167 591.7 392 75.3
BcaC01g06194 Brassica carinata HOM05D005974 ORTHO05D007201 8.5e-166 587.4 392 74.5
BolC3t14221H Brassica oleracea HOM05D005974 ORTHO05D007201 8.5e-166 587.4 392 74.5
QL12p041028 Quercus lobata HOM05D005974 ORTHO05D007201 1.1e-165 587.0 380 79.7
C04p55740 Brassica napus HOM05D005974 ORTHO05D007201 5.5e-165 584.7 427 69.8
BraA04t17588Z Brassica rapa HOM05D005974 ORTHO05D007201 5.5e-165 584.7 412 72.3
A04p20060 Brassica napus HOM05D005974 ORTHO05D007201 9.4e-165 583.9 427 69.8
Nitab4.5_0001737g0060 Nicotiana tabacum HOM05D005974 ORTHO05D007201 1.2e-164 583.6 420 72.9
BolC4t27100H Brassica oleracea HOM05D005974 ORTHO05D007201 2.1e-164 582.8 412 72.1
MBI04_g20303_MAGBIO Magnolia biondii HOM05D005974 ORTHO05D007201 3.0e-163 578.9 418 73.0
CARHR115390 Cardamine hirsuta HOM05D005974 ORTHO05D007201 3.9e-163 578.6 412 71.1
AT2G25840 Arabidopsis thaliana HOM05D005974 ORTHO05D007201 7.4e-162 574.3 413 70.0
C03p18200 Brassica napus HOM05D005974 ORTHO05D007201 1.3e-161 573.5 354 78.5
AL4G17680 Arabidopsis lyrata HOM05D005974 ORTHO05D007201 2.2e-161 572.8 420 69.3
Carub.0004s0567 Capsella rubella HOM05D005974 ORTHO05D007201 6.9e-160 567.8 415 70.6
BraA03t10849Z Brassica rapa HOM05D005974 ORTHO05D007201 2.0e-159 566.2 343 79.9
arahy.Tifrunner.gnm1.ann1.I5HST9 Arachis hypogaea HOM05D005974 ORTHO05D007201 1.0e-158 563.9 400 73.0
Peaxi162Scf00064g01533 Petunia axillaris HOM05D005974 ORTHO05D007201 5.0e-158 561.6 414 70.3
Thhalv10002003m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 8.5e-158 560.8 405 69.1
Thhalv10002006m.g Eutrema salsugineum HOM05D005974 ORTHO05D007201 1.6e-156 556.6 397 70.3
Psat5g020640 Pisum sativum HOM05D005974 ORTHO05D007201 3.9e-155 552.0 366 74.6
CDE02G2857 Ceratophyllum demersum HOM05D005974 ORTHO05D007201 1.1e-154 550.4 322 82.9
Aa31LG5G9820 Aethionema arabicum HOM05D005974 ORTHO05D007201 5.7e-154 548.1 377 72.1
BcaB06g29640 Brassica carinata HOM05D005974 ORTHO05D007201 5.7e-154 548.1 363 74.4
DCAR_018521 Daucus carota HOM05D005974 ORTHO05D007201 2.4e-152 542.7 299 88.6
AagrBONN_evm.TU.Sc2ySwM_344.1805 Anthoceros agrestis HOM05D005974 ORTHO05D007201 3.1e-152 542.3 346 74.0
Lj8C569G5 Lonicera japonica HOM05D000602 ORTHO05D001147 5.3e-152 541.6 395 70.4
HPP92_024453 Vanilla planifolia HOM05D005974 ORTHO05D007201 2.5e-149 532.7 367 72.8
Mapoly0137s0001 Marchantia polymorpha HOM05D005974 ORTHO05D007201 5.5e-149 531.6 357 71.1
Sed0012339 Sechium edule HOM05D005974 ORTHO05D007201 2.7e-148 529.3 341 80.4
Duzib187G1338 Durio zibethinus HOM05D005974 ORTHO05D007201 4.4e-146 521.9 401 70.3
AUR62007372 Chenopodium quinoa HOM05D005974 ORTHO05D007201 5.7e-146 521.5 379 69.7
Pp3c13_12220 Physcomitrium patens HOM05D005974 ORTHO05D007201 1.6e-143 513.5 360 69.2
VMungo1309G1913 Vigna mungo HOM05D005974 ORTHO05D007201 7.2e-141 504.6 271 89.7
vmacro11047 Vaccinium macrocarpon HOM05D005974 ORTHO05D007201 2.7e-140 502.7 439 62.0
SGA_v2.0_scaffold163G38058 Striga asiatica HOM05D005974 ORTHO05D007201 1.3e-137 493.8 346 72.8
SMO116G0397 Selaginella moellendorffii HOM05D005974 ORTHO05D007201 6.3e-137 491.5 351 68.4
Nn7g37050 Nelumbo nucifera HOM05D005974 ORTHO05D007201 5.5e-133 478.4 415 62.7
PRCOL_00006768 Prasinoderma coloniale HOM05D005974 ORTHO05D007201 1.0e-131 474.2 352 64.8
Prupe.1G445200 Prunus persica HOM05D005974 ORTHO05D007201 5.6e-125 451.8 301 76.4
Hund14385 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.0e-123 447.6 254 84.6
MCO14G391 Micromonas commoda HOM05D005974 ORTHO05D007201 3.0e-123 446.0 353 62.3
Cre05.g238322 Chlamydomonas reinhardtii HOM05D005974 ORTHO05D007201 5.2e-123 445.3 343 61.8
Gohir.D06G090920 Gossypium hirsutum HOM05D005974 ORTHO05D007201 2.6e-106 389.8 213 89.2
HanXRQChr06g0174211 Helianthus annuus HOM05D005974 ORTHO05D007201 2.1e-95 353.6 203 82.3
Zm00001eb153590 Zea mays HOM05D005974 ORTHO05D007201 1.4e-91 340.9 257 69.3
BcaB06g29641 Brassica carinata HOM05D005974 ORTHO05D007201 2.9e-89 333.2 212 77.8
CBR_g26161 Chara braunii HOM05D005974 ORTHO05D007201 1.9e-80 303.9 204 71.1
Haze_27433 Corylus avellana HOM05D005974 ORTHO05D007201 8.4e-65 251.9 274 48.9
Cfa024571 Carpinus fangiana HOM05D005974 ORTHO05D007201 7.4e-53 212.2 380 36.8
Haze_21915 Corylus avellana HOM05D005974 ORTHO05D007201 2.9e-49 200.3 123 86.2
Ah.07g201090 Amaranthus hybridus HOM05D005974 ORTHO05D007201 9.1e-43 178.7 246 43.5
Lsat_1_v5_gn_5_27580 Lactuca sativa HOM05D005974 ORTHO05D007201 2.0e-42 177.6 214 47.2
SEGI_31887 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 8.2e-36 155.6 101 71.3
SEGI_40033 Sequoiadendron giganteum HOM05D005974 ORTHO05D007201 3.8e-33 146.7 85 78.8
CDE08G1286 Ceratophyllum demersum HOM05D000581 ORTHO05D000412 8.2e-28 129.0 74 83.8
Lsat_1_v5_gn_9_95260 Lactuca sativa HOM05D005974 ORTHO05D007201 4.1e-27 126.7 165 44.8
VMungo1309G1904 Vigna mungo HOM05D005974 ORTHO05D007201 5.9e-26 122.9 74 77.0
Hund30885 Selenicereus undatus HOM05D005974 ORTHO05D007201 1.6e-23 114.8 120 52.5
Hund30611 Selenicereus undatus HOM05D005974 ORTHO05D007201 2.7e-23 114.0 121 53.7
Gohir.A05G045550 Gossypium hirsutum HOM05D005974 ORTHO05D007201 5.9e-18 96.3 74 70.3
Gohir.D06G090940 Gossypium hirsutum HOM05D005974 ORTHO05D007201 4.0e-14 83.6 44 84.1
arahy.Tifrunner.gnm1.ann1.05PEK3 Arachis hypogaea HOM05D005974 ORTHO05D038942 1.2e-13 82.0 100 45.0
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 6.3e-12 76.3 110 47.3
arahy.Tifrunner.gnm1.ann1.8YH8YH Arachis hypogaea HOM05D005974 ORTHO05D007201 2.7e-10 70.9 93 44.1
TAR383G0536 Trochodendron aralioides HOM05D005974 ORTHO05D007201 3.3e-08 63.9 48 64.6
CBR_g26165 Chara braunii HOM05D005974 ORTHO05D007201 5.6e-08 63.2 37 75.7


User provided reference genes

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