Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 4.3e-62 241.1 120 100.0
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 9.7e-46 186.8 115 80.9
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 4.8e-45 184.5 115 80.0
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 6.5e-42 174.1 114 73.7
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 6.5e-42 174.1 113 76.1
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 8.5e-42 173.7 114 72.8
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 1.9e-41 172.6 114 72.8
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.5e-41 172.2 114 72.8
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 4.2e-41 171.4 114 71.9
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 7.2e-41 170.6 114 72.8
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 1.2e-40 169.9 114 71.9
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.2e-40 169.9 114 71.1
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 1.6e-40 169.5 114 70.2
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 1.6e-40 169.5 114 71.9
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 2.7e-40 168.7 114 71.1
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 6.1e-40 167.5 114 71.1
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 7.9e-40 167.2 113 70.8
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 7.9e-40 167.2 115 71.3
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 1.0e-39 166.8 114 71.1
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.0e-39 166.8 114 71.1
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 1.0e-39 166.8 114 71.1
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.4e-39 166.4 114 70.2
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 1.4e-39 166.4 114 70.2
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 1.4e-39 166.4 114 69.3
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.4e-39 166.4 113 69.9
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 2.3e-39 165.6 114 71.1
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 2.3e-39 165.6 113 72.6
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 2.3e-39 165.6 115 69.6
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 3.9e-39 164.9 114 69.3
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 3.9e-39 164.9 114 69.3
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 2.6e-38 162.2 114 68.4
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 3.3e-38 161.8 113 70.8
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 5.7e-38 161.0 115 67.8
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 5.7e-38 161.0 114 71.1
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 7.4e-38 160.6 113 67.3
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 7.4e-38 160.6 114 68.4
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 9.7e-38 160.2 114 67.5
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 9.7e-38 160.2 114 71.1
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 1.7e-37 159.5 115 67.0
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 1.7e-37 159.5 114 65.8
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 2.2e-37 159.1 114 68.4
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 2.2e-37 159.1 114 69.3
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 2.2e-37 159.1 114 70.2
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 2.8e-37 158.7 113 69.0
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 4.8e-37 157.9 114 67.5
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 4.8e-37 157.9 114 65.8
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 4.8e-37 157.9 114 65.8
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 4.8e-37 157.9 114 69.3
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 6.3e-37 157.5 114 67.5
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 8.2e-37 157.1 114 67.5
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 8.2e-37 157.1 114 64.9
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 1.1e-36 156.8 114 67.5
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 1.4e-36 156.4 114 66.7
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.8e-36 156.0 115 65.2
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 2.4e-36 155.6 115 67.0
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 3.1e-36 155.2 104 73.1
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 4.1e-36 154.8 115 67.0
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 4.1e-36 154.8 115 66.1
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 5.3e-36 154.5 114 64.0
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 5.3e-36 154.5 114 68.4
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 7.0e-36 154.1 116 66.4
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 7.0e-36 154.1 104 71.2
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 7.0e-36 154.1 104 71.2
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 7.0e-36 154.1 104 71.2
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 7.0e-36 154.1 104 71.2
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 9.1e-36 153.7 113 64.6
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 1.2e-35 153.3 113 63.7
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 1.2e-35 153.3 113 63.7
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 1.2e-35 153.3 104 71.2
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.5e-35 152.9 115 65.2
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 1.5e-35 152.9 114 67.5
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 1.5e-35 152.9 114 65.8
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 2.0e-35 152.5 115 66.1
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 2.6e-35 152.1 114 63.2
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 4.5e-35 151.4 114 63.2
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 4.5e-35 151.4 115 64.3
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 4.5e-35 151.4 115 64.3
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 4.5e-35 151.4 115 64.3
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 4.5e-35 151.4 115 64.3
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 4.5e-35 151.4 115 66.1
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 5.9e-35 151.0 114 66.7
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 5.9e-35 151.0 113 63.7
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 5.9e-35 151.0 104 70.2
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 5.9e-35 151.0 116 68.1
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 7.7e-35 150.6 115 66.1
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 7.7e-35 150.6 116 68.1
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 1.0e-34 150.2 114 64.9
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.0e-34 150.2 113 67.3
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 1.7e-34 149.4 117 60.7
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 2.2e-34 149.1 114 62.3
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 2.9e-34 148.7 115 63.5
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 2.9e-34 148.7 115 63.5
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 2.9e-34 148.7 115 63.5
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 2.9e-34 148.7 115 63.5
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 3.8e-34 148.3 114 64.0
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 3.8e-34 148.3 115 63.5
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 3.8e-34 148.3 115 63.5
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 5.0e-34 147.9 110 62.7
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 5.0e-34 147.9 116 67.2
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.1e-33 146.7 113 65.5
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.9e-33 146.0 113 61.9
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 7.2e-33 144.1 114 64.0
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 7.2e-33 144.1 114 60.5
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 2.1e-32 142.5 103 68.0
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 2.7e-32 142.1 118 61.0
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 1.0e-31 140.2 113 59.3
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 1.8e-31 139.4 107 65.4
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 2.3e-31 139.0 116 61.2
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 2.0e-30 136.0 104 62.5
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 5.7e-30 134.4 114 57.0
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 5.7e-30 134.4 113 59.3
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 1.6e-27 126.3 113 56.6
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 2.6e-27 125.6 113 56.6
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 7.7e-27 124.0 104 56.7
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 1.3e-26 123.2 114 53.5
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 5.0e-26 121.3 105 58.1
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 2.5e-25 119.0 107 53.3
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 3.2e-25 118.6 104 55.8
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 7.2e-25 117.5 88 67.0
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 6.1e-24 114.4 103 56.3
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.6e-22 109.0 103 51.5
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 2.2e-21 105.9 115 48.7
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 1.0e-18 97.1 104 49.0
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 1.5e-17 93.2 89 53.9
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 2.1e-16 89.4 58 72.4
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 2.3e-15 85.9 114 46.5
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 5.7e-14 81.3 101 42.6


User provided reference genes

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