Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G155400 Populus trichocarpa HOM05D006797 ORTHO05D007696 7.8e-43 177.2 122 100.0
MSTRG.8842 Avicennia marina HOM05D006797 ORTHO05D007696 1.9e-28 129.4 122 59.0
Manes.03G071800 Manihot esculenta HOM05D006797 ORTHO05D007696 2.7e-27 125.6 122 63.1
SGA_v2.0_scaffold60G20810 Striga asiatica HOM05D006797 ORTHO05D007696 6.6e-26 120.9 120 57.5
Migut.F00519 Erythranthe guttata HOM05D006797 ORTHO05D007696 1.5e-25 119.8 122 59.8
Oeu036765.2 Olea europaea HOM05D006797 ORTHO05D007696 1.6e-24 116.3 124 56.5
SGA_v2.0_scaffold44G16576 Striga asiatica HOM05D001006 ORTHO05D000868 3.6e-24 115.2 120 55.0
SalBow3G3973 Salvia bowleyana HOM05D006797 ORTHO05D007696 5.3e-23 111.3 122 53.3
HanXRQChr12g0377351 Helianthus annuus HOM05D006797 ORTHO05D007696 6.9e-23 110.9 122 54.9
Solyc02g082020.3 Solanum lycopersicum HOM05D006797 ORTHO05D007696 9.0e-23 110.5 124 57.3
Sopen02g026660 Solanum pennellii HOM05D006797 ORTHO05D007696 2.0e-22 109.4 124 56.5
ECA248G3234 Erigeron canadensis HOM05D006797 ORTHO05D007696 2.6e-22 109.0 122 54.9
CAN.G809.30 Capsicum annuum HOM05D006797 ORTHO05D007696 5.8e-22 107.8 124 57.3
Peaxi162Scf00036g02019 Petunia axillaris HOM05D006797 ORTHO05D007696 5.8e-22 107.8 124 55.6
PGSC0003DMG400007337 Solanum tuberosum HOM05D006797 ORTHO05D007696 5.8e-22 107.8 124 55.6
PGR042G0784 Punica granatum HOM05D006797 ORTHO05D007696 9.9e-22 107.1 120 55.0
Lsat_1_v5_gn_3_103300 Lactuca sativa HOM05D006797 ORTHO05D007696 4.9e-21 104.8 112 55.4
RcHm_v2.0_Chr5g0021541 Rosa chinensis HOM05D006797 ORTHO05D007696 6.4e-21 104.4 128 53.1
Sc24g0002860 Simmondsia chinensis HOM05D006797 ORTHO05D007696 6.4e-21 104.4 125 54.4
Atru.chr10.261 Acer truncatum HOM05D006797 ORTHO05D007696 1.1e-20 103.6 117 59.0
Ah.15g091850 Amaranthus hybridus HOM05D006797 ORTHO05D007696 1.9e-20 102.8 126 55.6
GSVIVG01012170001 Vitis vinifera HOM05D006797 ORTHO05D007696 1.9e-20 102.8 127 52.8
Cc09_g04790 Coffea canephora HOM05D006797 ORTHO05D007696 3.2e-20 102.1 120 54.2
Sabra03G0112800 Salix brachista HOM05D006797 ORTHO05D007696 3.2e-20 102.1 56 96.4
Nitab4.5_0003902g0030 Nicotiana tabacum HOM05D006797 ORTHO05D007696 7.1e-20 100.9 124 53.2
TAR626G0010 Trochodendron aralioides HOM05D006797 ORTHO05D007696 1.2e-19 100.1 130 54.6
Sed0011432 Sechium edule HOM05D006797 ORTHO05D007696 1.6e-19 99.8 126 54.8
Ciclev10017227m.g Citrus clementina HOM05D006797 ORTHO05D007696 2.7e-19 99.0 118 56.8
Nitab4.5_0000632g0020 Nicotiana tabacum HOM05D006797 ORTHO05D007696 6.0e-19 97.8 124 52.4
Rhsim13G0134800 Rhododendron simsii HOM05D006797 ORTHO05D007696 6.0e-19 97.8 124 58.1
CSS0049260 Camellia sinensis var. sinensis HOM05D006797 ORTHO05D007696 7.9e-19 97.4 126 51.6
Dinv03172 Davidia involucrata HOM05D006797 ORTHO05D007696 3.0e-18 95.5 123 66.7
QL11p011767 Quercus lobata HOM05D006797 ORTHO05D007696 3.9e-18 95.1 124 51.6
EL10Ac7g17249 Beta vulgaris HOM05D006797 ORTHO05D007696 1.1e-17 93.6 125 49.6
ClCG01G025860 Citrullus lanatus HOM05D006797 ORTHO05D007696 1.5e-17 93.2 126 52.4
Lalb_Chr07g0188191 Lupinus albus HOM05D006797 ORTHO05D007696 1.9e-17 92.8 127 53.5
MD10G1226000 Malus domestica HOM05D006797 ORTHO05D007696 1.9e-17 92.8 126 48.4
Glyma.05G134500 Glycine max HOM05D006797 ORTHO05D007696 2.5e-17 92.4 123 52.0
Prupe.4G119300 Prunus persica HOM05D006797 ORTHO05D007696 3.3e-17 92.0 126 48.4
THA.LOC104812696 Tarenaya hassleriana HOM05D006797 ORTHO05D007696 4.3e-17 91.7 126 50.8
FAN16G2513 Fragaria x ananassa HOM05D006797 ORTHO05D007696 5.6e-17 91.3 128 60.2
FAN21G4013 Fragaria x ananassa HOM05D006797 ORTHO05D007696 5.6e-17 91.3 128 60.9
FAN25G1182 Fragaria x ananassa HOM05D006797 ORTHO05D007696 5.6e-17 91.3 128 60.9
arahy.Tifrunner.gnm1.ann1.30I9D2 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.6e-16 89.7 126 50.8
arahy.Tifrunner.gnm1.ann1.3X9X11 Arachis hypogaea HOM05D006797 ORTHO05D007696 1.6e-16 89.7 126 50.8
Dinv02379 Davidia involucrata HOM05D006797 ORTHO05D007696 2.8e-16 89.0 110 66.4
FvH4_3g13200 Fragaria vesca HOM05D006797 ORTHO05D007696 2.8e-16 89.0 128 60.2
FAN11G3985 Fragaria x ananassa HOM05D006797 ORTHO05D007696 2.8e-16 89.0 128 60.2
Gorai.010G130400 Gossypium raimondii HOM05D006797 ORTHO05D007696 2.8e-16 89.0 124 50.8
Cpa.g.sc30.90 Carica papaya HOM05D006797 ORTHO05D007696 3.6e-16 88.6 125 59.2
MELO3C007002.2 Cucumis melo HOM05D006797 ORTHO05D007696 4.8e-16 88.2 126 48.4
CANSAT35G2044 Cannabis sativa HOM05D006797 ORTHO05D007696 8.1e-16 87.4 129 47.3
CiPaw.10G107100 Carya illinoinensis HOM05D006797 ORTHO05D007696 8.1e-16 87.4 114 51.8
AUR62042807 Chenopodium quinoa HOM05D006797 ORTHO05D007696 8.1e-16 87.4 122 46.7
Glyma.08G089600 Glycine max HOM05D006797 ORTHO05D007696 8.1e-16 87.4 123 49.6
Medtr4g094782 Medicago truncatula HOM05D006797 ORTHO05D007696 8.1e-16 87.4 127 49.6
Phvul.002G187600 Phaseolus vulgaris HOM05D006797 ORTHO05D007696 1.1e-15 87.0 122 49.2
Gohir.A06G110200 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.4e-15 86.7 124 50.0
Gohir.D06G114100 Gossypium hirsutum HOM05D006797 ORTHO05D007696 1.8e-15 86.3 124 50.0
PSO675G1942 Papaver somniferum HOM05D006797 ORTHO05D007696 1.8e-15 86.3 120 44.2
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 4.0e-15 85.1 125 45.6
PSO541G4265 Papaver somniferum HOM05D006797 ORTHO05D007696 5.3e-15 84.7 120 43.3
TPR.G27392 Trifolium pratense HOM05D006797 ORTHO05D007696 5.3e-15 84.7 127 48.8
Duzib211G0055 Durio zibethinus HOM05D006797 ORTHO05D007696 1.5e-14 83.2 123 47.2
Lj4g0013366 Lotus japonicus HOM05D006797 ORTHO05D007696 1.5e-14 83.2 107 48.6
CsaV3_6G053080 Cucumis sativus L. HOM05D006797 ORTHO05D007696 2.0e-14 82.8 126 46.8
Hund23985 Selenicereus undatus HOM05D006797 ORTHO05D007696 2.0e-14 82.8 125 48.0
TWI38G0311 Tripterygium wilfordii HOM05D006797 ORTHO05D007696 4.5e-14 81.6 123 49.6
BcaB04g18200 Brassica carinata HOM05D006797 ORTHO05D007696 5.8e-14 81.3 127 48.0
Psat7g087040 Pisum sativum HOM05D006797 ORTHO05D007696 5.8e-14 81.3 129 48.1
Sp1g26780 Schrenkiella parvula HOM05D006797 ORTHO05D007696 7.6e-14 80.9 124 48.4
A09p35270 Brassica napus HOM05D006797 ORTHO05D007696 1.7e-13 79.7 127 48.0
BcaC07g37796 Brassica carinata HOM05D006797 ORTHO05D007696 2.2e-13 79.3 127 48.0
Ca_18220_v3 Cicer arietinum L. HOM05D006797 ORTHO05D007696 2.2e-13 79.3 128 49.2
BolC8t48187H Brassica oleracea HOM05D006797 ORTHO05D007696 3.8e-13 78.6 127 48.0
Thhalv10009126m.g Eutrema salsugineum HOM05D006797 ORTHO05D007696 3.8e-13 78.6 127 46.5
BcaC05g27127 Brassica carinata HOM05D006797 ORTHO05D007696 4.9e-13 78.2 127 46.5
A08p10910 Brassica napus HOM05D006797 ORTHO05D007696 4.9e-13 78.2 127 47.2
C05p30120 Brassica napus HOM05D006797 ORTHO05D007696 4.9e-13 78.2 127 46.5
BraA08t33088Z Brassica rapa HOM05D006797 ORTHO05D007696 4.9e-13 78.2 127 47.2
VMungo0251G2933 Vigna mungo HOM05D006797 ORTHO05D007696 4.9e-13 78.2 112 50.0
BcaB07g32754 Brassica carinata HOM05D006797 ORTHO05D007696 6.4e-13 77.8 127 46.5
Aa31LG6G12300 Aethionema arabicum HOM05D006797 ORTHO05D007696 8.4e-13 77.4 127 47.2
A07p09570 Brassica napus HOM05D006797 ORTHO05D007696 8.4e-13 77.4 130 47.7
BraA07t28751Z Brassica rapa HOM05D006797 ORTHO05D007696 8.4e-13 77.4 130 47.7
BraA09t39054Z Brassica rapa HOM05D006797 ORTHO05D007696 8.4e-13 77.4 127 47.2
BolC7t41975H Brassica oleracea HOM05D006797 ORTHO05D007696 1.9e-12 76.3 127 46.5
COL.COLO4_25039 Corchorus olitorius HOM05D006797 ORTHO05D007696 3.2e-12 75.5 101 51.5
AT1G30880 Arabidopsis thaliana HOM05D006797 ORTHO05D007696 4.2e-12 75.1 121 47.9
C07p14730 Brassica napus HOM05D006797 ORTHO05D007696 4.2e-12 75.1 127 45.7
BolC5t31749H Brassica oleracea HOM05D006797 ORTHO05D007696 5.4e-12 74.7 128 45.3
AL1G45170 Arabidopsis lyrata HOM05D006797 ORTHO05D007696 7.1e-12 74.3 121 46.3
CDE05G1867 Ceratophyllum demersum HOM05D006797 ORTHO05D007696 7.1e-12 74.3 122 43.4
Hma1.2p1_1220F.1_g268030 Hydrangea macrophylla HOM05D006797 ORTHO05D007696 1.6e-11 73.2 125 43.2
Carub.0001s2922 Capsella rubella HOM05D006797 ORTHO05D007696 3.5e-11 72.0 121 45.5
Haze_24216 Corylus avellana HOM05D006797 ORTHO05D007696 3.5e-11 72.0 129 41.9
Nn1g05854 Nelumbo nucifera HOM05D006797 ORTHO05D007696 3.5e-11 72.0 125 46.4
vmacro03563 Vaccinium macrocarpon HOM05D006797 ORTHO05D007696 4.6e-11 71.6 48 79.2
CARHR030370 Cardamine hirsuta HOM05D006797 ORTHO05D007696 7.9e-11 70.9 121 45.5
ATR0763G022 Amborella trichopoda HOM05D006797 ORTHO05D007696 1.3e-10 70.1 56 67.9
Thecc.02G002300 Theobroma cacao HOM05D006797 ORTHO05D007696 1.3e-10 70.1 57 68.4
unitig_37.g11921 Utricularia gibba HOM05D006797 ORTHO05D007696 2.3e-10 69.3 48 79.2
HPP92_013198 Vanilla planifolia HOM05D006797 ORTHO05D007696 1.5e-09 66.6 136 40.4
Zm00001eb430680 Zea mays HOM05D006797 ORTHO05D007696 3.3e-09 65.5 124 41.9
Haze_05201 Corylus avellana HOM05D000001 ORTHO05D010268 4.3e-09 65.1 50 70.0
Haze_15747 Corylus avellana HOM05D006797 ORTHO05D007696 4.3e-09 65.1 50 70.0
DCAR_001265 Daucus carota HOM05D006797 ORTHO05D007696 4.3e-09 65.1 107 62.6
MBI18_g20922_MAGBIO Magnolia biondii HOM05D006797 ORTHO05D007696 5.6e-09 64.7 128 52.3
Os04g0611300 Oryza sativa ssp. japonica HOM05D006797 ORTHO05D007696 5.6e-09 64.7 119 52.1
Zm00001eb071100 Zea mays HOM05D006797 ORTHO05D007696 9.6e-09 63.9 124 41.9
Sabra15G0036100 Salix brachista HOM05D006797 ORTHO05D007696 1.6e-08 63.2 48 72.9
Sabra10G0072900 Salix brachista HOM05D024558 ORTHO05D007696 2.1e-08 62.8 36 83.3
Sabra15G0035800 Salix brachista HOM05D024558 ORTHO05D007696 2.1e-08 62.8 36 83.3
Sabra17G0001100 Salix brachista HOM05D024558 ORTHO05D007696 2.1e-08 62.8 36 83.3
Sabra13G0047000 Salix brachista HOM05D024558 ORTHO05D007696 2.8e-08 62.4 36 83.3
Sabra16G0103500 Salix brachista HOM05D024558 ORTHO05D007696 6.2e-08 61.2 36 80.6
Sabra19G0001200 Salix brachista HOM05D000340 ORTHO05D000677 6.2e-08 61.2 36 80.6
Zm00001eb442340 Zea mays HOM05D006797 ORTHO05D007696 6.2e-08 61.2 107 43.0
Oeu008734.1 Olea europaea HOM05D016541 ORTHO05D007696 1.1e-07 60.5 55 67.3
Pp3c24_14860 Physcomitrium patens HOM05D006797 ORTHO05D007696 5.8e-06 54.7 45 66.7


User provided reference genes

Program Settings