Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G154500 Populus trichocarpa HOM05D004928 ORTHO05D005901 2.2e-151 538.9 258 100.0
Sabra03G0111800 Salix brachista HOM05D004928 ORTHO05D005901 1.3e-135 486.5 319 77.7
Manes.16G057900 Manihot esculenta HOM05D004928 ORTHO05D005901 4.1e-134 481.5 258 89.5
Thecc.02G003200 Theobroma cacao HOM05D004928 ORTHO05D005901 2.9e-132 475.3 258 87.6
COL.COLO4_16227 Corchorus olitorius HOM05D004928 ORTHO05D005901 6.8e-129 464.2 258 85.7
Dinv07002 Davidia involucrata HOM05D004928 ORTHO05D005901 2.6e-128 462.2 256 84.8
GSVIVG01012153001 Vitis vinifera HOM05D004928 ORTHO05D005901 3.4e-128 461.8 253 83.8
TWI63G1368 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 4.4e-128 461.5 256 85.2
QL11p012028 Quercus lobata HOM05D004928 ORTHO05D005901 7.5e-128 460.7 257 83.3
Duzib052G0480 Durio zibethinus HOM05D004928 ORTHO05D005901 9.8e-128 460.3 252 85.7
TWI63G1259 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 2.2e-127 459.1 256 84.4
AUR62028880 Chenopodium quinoa HOM05D004928 ORTHO05D005901 3.7e-127 458.4 253 83.8
Ciclev10016366m.g Citrus clementina HOM05D004928 ORTHO05D005901 3.7e-127 458.4 251 84.5
Glyma.09G050700 Glycine max HOM05D004928 ORTHO05D005901 3.7e-127 458.4 258 82.9
HanXRQChr16g0510381 Helianthus annuus HOM05D004928 ORTHO05D005901 3.7e-127 458.4 251 84.1
Hma1.2p1_0088F.1_g045270 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 3.7e-127 458.4 258 82.6
Gohir.A11G219600 Gossypium hirsutum HOM05D004928 ORTHO05D005901 6.3e-127 457.6 251 84.5
Glyma.15G156700 Glycine max HOM05D004928 ORTHO05D005901 1.1e-126 456.8 258 82.6
AUR62005675 Chenopodium quinoa HOM05D004928 ORTHO05D005901 2.4e-126 455.7 253 83.4
Hund06113 Selenicereus undatus HOM05D004928 ORTHO05D005901 3.1e-126 455.3 258 83.3
Atru.chr10.297 Acer truncatum HOM05D004928 ORTHO05D005901 5.4e-126 454.5 256 84.4
Cc09_g05120 Coffea canephora HOM05D004928 ORTHO05D005901 5.4e-126 454.5 258 81.4
Oeu008731.1 Olea europaea HOM05D004928 ORTHO05D005901 7.0e-126 454.1 251 84.1
Eucgr.D00011 Eucalyptus grandis HOM05D004928 ORTHO05D005901 9.1e-126 453.8 250 84.4
Hma1.2p1_1011F.1_g247510 Hydrangea macrophylla HOM05D004928 ORTHO05D005901 9.1e-126 453.8 257 82.5
arahy.Tifrunner.gnm1.ann1.D040QL Arachis hypogaea HOM05D004928 ORTHO05D005901 1.2e-125 453.4 258 81.0
Gohir.D11G203900 Gossypium hirsutum HOM05D004928 ORTHO05D005901 1.2e-125 453.4 251 84.1
Gorai.007G218800 Gossypium raimondii HOM05D004928 ORTHO05D005901 1.2e-125 453.4 251 84.1
ECA236G0137 Erigeron canadensis HOM05D004928 ORTHO05D005901 1.6e-125 453.0 251 82.5
TPR.G29696 Trifolium pratense HOM05D004928 ORTHO05D005901 1.6e-125 453.0 258 82.2
TAR624G0928 Trochodendron aralioides HOM05D004928 ORTHO05D005901 2.0e-125 452.6 258 81.4
arahy.Tifrunner.gnm1.ann1.C65LVJ Arachis hypogaea HOM05D004928 ORTHO05D005901 4.5e-125 451.4 258 80.6
Lsat_1_v5_gn_8_100741 Lactuca sativa HOM05D004928 ORTHO05D005901 4.5e-125 451.4 248 82.3
RcHm_v2.0_Chr5g0021221 Rosa chinensis HOM05D004928 ORTHO05D005901 2.2e-124 449.1 258 81.8
vmacro03559 Vaccinium macrocarpon HOM05D004928 ORTHO05D005901 2.2e-124 449.1 254 81.1
ClCG01G025740 Citrullus lanatus HOM05D004928 ORTHO05D005901 2.9e-124 448.7 249 83.5
CsaV3_6G052980 Cucumis sativus L. HOM05D004928 ORTHO05D005901 2.9e-124 448.7 249 83.1
FAN25G2296 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.9e-124 448.7 251 83.3
FvH4_3g13030 Fragaria vesca HOM05D004928 ORTHO05D005901 8.5e-124 447.2 251 82.9
Duzib132G1236 Durio zibethinus HOM05D004928 ORTHO05D005901 1.1e-123 446.8 246 83.7
FAN11G1970 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.1e-123 446.8 251 82.9
FAN16G2045 Fragaria x ananassa HOM05D004928 ORTHO05D005901 1.1e-123 446.8 258 81.4
Rhsim07G0106700 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.1e-123 446.8 258 80.2
Rhsim07G0107300 Rhododendron simsii HOM05D004928 ORTHO05D005901 1.1e-123 446.8 258 80.2
Medtr2g035440 Medicago truncatula HOM05D004928 ORTHO05D005901 1.5e-123 446.4 251 81.7
PGR004G1274 Punica granatum HOM05D004928 ORTHO05D005901 1.5e-123 446.4 253 82.6
CSS0019994 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.9e-123 446.0 251 82.9
DCAR_003759 Daucus carota HOM05D004928 ORTHO05D005901 2.5e-123 445.7 251 81.7
DCAR_007776 Daucus carota HOM05D004928 ORTHO05D005901 3.2e-123 445.3 251 81.3
Sed0024720 Sechium edule HOM05D004928 ORTHO05D005901 4.2e-123 444.9 249 82.7
PSO675G4596 Papaver somniferum HOM05D004928 ORTHO05D005901 7.2e-123 444.1 251 80.5
CiPaw.10G105700 Carya illinoinensis HOM05D004928 ORTHO05D005901 9.4e-123 443.7 258 80.6
PSO675G0356 Papaver somniferum HOM05D004928 ORTHO05D005901 9.4e-123 443.7 251 80.5
Prupe.4G118300 Prunus persica HOM05D004928 ORTHO05D005901 9.4e-123 443.7 258 79.8
MSTRG.16373 Avicennia marina HOM05D004928 ORTHO05D005901 1.6e-122 443.0 251 82.5
CANSAT54G2025 Cannabis sativa HOM05D004928 ORTHO05D005901 1.6e-122 443.0 251 81.3
FAN21G2782 Fragaria x ananassa HOM05D004928 ORTHO05D005901 2.1e-122 442.6 251 82.5
THA.LOC104806228 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 2.1e-122 442.6 251 82.9
Lalb_Chr20g0114311 Lupinus albus HOM05D004928 ORTHO05D005901 2.7e-122 442.2 253 79.4
Nitab4.5_0003602g0030 Nicotiana tabacum HOM05D004928 ORTHO05D005901 3.6e-122 441.8 257 79.8
Psat1g150320 Pisum sativum HOM05D004928 ORTHO05D005901 3.6e-122 441.8 258 79.8
Lj6g0011694 Lotus japonicus HOM05D004928 ORTHO05D005901 6.1e-122 441.0 251 80.5
SalBow8G3731 Salvia bowleyana HOM05D004928 ORTHO05D005901 8.0e-122 440.7 251 80.9
Sp2g09570 Schrenkiella parvula HOM05D004928 ORTHO05D005901 8.0e-122 440.7 258 80.6
Sc04g0010410 Simmondsia chinensis HOM05D004928 ORTHO05D005901 8.0e-122 440.7 256 81.6
Peaxi162Scf00036g02214 Petunia axillaris HOM05D004928 ORTHO05D005901 1.0e-121 440.3 257 79.0
Ah.02g131070 Amaranthus hybridus HOM05D004928 ORTHO05D005901 1.4e-121 439.9 253 81.8
Migut.M02014 Erythranthe guttata HOM05D004928 ORTHO05D005901 1.4e-121 439.9 251 80.9
PGSC0003DMG400007328 Solanum tuberosum HOM05D004928 ORTHO05D005901 1.8e-121 439.5 253 79.8
THA.LOC104811853 Tarenaya hassleriana HOM05D004928 ORTHO05D005901 1.8e-121 439.5 251 82.1
Lj2A342T116 Lonicera japonica HOM05D004928 ORTHO05D005901 2.3e-121 439.1 285 74.0
CAN.G809.53 Capsicum annuum HOM05D004928 ORTHO05D005901 6.8e-121 437.6 257 79.0
VMungo1309G2001 Vigna mungo HOM05D004928 ORTHO05D005901 6.8e-121 437.6 251 80.1
Zm00001eb389800 Zea mays HOM05D004928 ORTHO05D005901 6.8e-121 437.6 250 81.2
ATR0763G111 Amborella trichopoda HOM05D004928 ORTHO05D005901 8.8e-121 437.2 250 80.4
Solyc02g081830.4 Solanum lycopersicum HOM05D004928 ORTHO05D005901 8.8e-121 437.2 253 79.8
Sopen02g026430 Solanum pennellii HOM05D004928 ORTHO05D005901 8.8e-121 437.2 253 79.8
Lj2A342G117 Lonicera japonica HOM05D004928 ORTHO05D005901 1.2e-120 436.8 285 73.7
Lalb_Chr15g0083711 Lupinus albus HOM05D004928 ORTHO05D005901 2.0e-120 436.0 251 78.9
CiPaw.09G137900 Carya illinoinensis HOM05D004928 ORTHO05D005901 3.4e-120 435.3 249 79.5
Nitab4.5_0003902g0100 Nicotiana tabacum HOM05D004928 ORTHO05D005901 3.4e-120 435.3 252 80.2
A06p46950 Brassica napus HOM05D004928 ORTHO05D005901 4.4e-120 434.9 258 79.1
BraA06t27568Z Brassica rapa HOM05D004928 ORTHO05D005901 4.4e-120 434.9 258 79.1
unitig_748.g8070 Utricularia gibba HOM05D004928 ORTHO05D005901 4.4e-120 434.9 253 79.8
Aa31LG9G8440 Aethionema arabicum HOM05D004928 ORTHO05D005901 5.7e-120 434.5 258 79.1
C07p27700 Brassica napus HOM05D004928 ORTHO05D005901 5.7e-120 434.5 258 79.1
MBI18_g01521_MAGBIO Magnolia biondii HOM05D004928 ORTHO05D005901 5.7e-120 434.5 265 75.8
HPP92_011006 Vanilla planifolia HOM05D004928 ORTHO05D005901 5.7e-120 434.5 249 79.5
Rhsim13G0134100 Rhododendron simsii HOM05D004928 ORTHO05D005901 7.5e-120 434.1 258 77.5
RhsimUnG0177000 Rhododendron simsii HOM05D004928 ORTHO05D005901 7.5e-120 434.1 258 77.5
Aqoxy1G01399 Aquilegia oxysepala HOM05D004928 ORTHO05D005901 9.8e-120 433.7 253 77.5
MD10G1226900 Malus domestica HOM05D004928 ORTHO05D005901 9.8e-120 433.7 251 78.5
BolC7t43301H Brassica oleracea HOM05D004928 ORTHO05D005901 1.3e-119 433.3 258 78.7
Carub.0008s0353 Capsella rubella HOM05D004928 ORTHO05D005901 1.3e-119 433.3 258 78.7
Thhalv10001002m.g Eutrema salsugineum HOM05D004928 ORTHO05D005901 1.3e-119 433.3 251 80.1
Os06g0665100 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 2.8e-119 432.2 254 78.0
AL8G14800 Arabidopsis lyrata HOM05D004928 ORTHO05D005901 4.9e-119 431.4 258 78.7
CARHR178170 Cardamine hirsuta HOM05D004928 ORTHO05D005901 8.3e-119 430.6 258 77.9
EL10Ac6g13559 Beta vulgaris HOM05D004928 ORTHO05D005901 5.4e-118 427.9 280 73.2
BcaB07g30927 Brassica carinata HOM05D004928 ORTHO05D005901 5.4e-118 427.9 258 79.1
BraA09t37735Z Brassica rapa HOM05D004928 ORTHO05D005901 5.4e-118 427.9 258 78.7
AT5G44730 Arabidopsis thaliana HOM05D004928 ORTHO05D005901 9.1e-118 427.2 258 77.9
A09p21300 Brassica napus HOM05D004928 ORTHO05D005901 1.2e-117 426.8 258 78.3
BcaC04g21818 Brassica carinata HOM05D004928 ORTHO05D005901 5.9e-117 424.5 258 77.9
C09p27080 Brassica napus HOM05D004928 ORTHO05D005901 5.9e-117 424.5 258 77.9
BolC9t55592H Brassica oleracea HOM05D004928 ORTHO05D005901 5.9e-117 424.5 258 77.9
Phvul.009G243000 Phaseolus vulgaris HOM05D004928 ORTHO05D005901 7.2e-115 417.5 233 82.0
SEGI_30550 Sequoiadendron giganteum HOM05D004928 ORTHO05D005901 3.0e-113 412.1 249 74.7
BcaC06g34510 Brassica carinata HOM05D004928 ORTHO05D005901 1.2e-112 410.2 233 81.1
CSS0010455 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 5.7e-112 407.9 258 77.1
Ca_01986_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 5.7e-112 407.9 251 77.3
CSS0036020 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.1e-107 393.7 262 74.4
Sopen02g026420 Solanum pennellii HOM05D004928 ORTHO05D005901 3.6e-106 388.7 255 68.6
Ca_01982_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 4.7e-106 388.3 240 76.7
Pp3c2_4490 Physcomitrium patens HOM05D004928 ORTHO05D005901 3.1e-105 385.6 248 69.0
CDE05G3391 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 2.2e-103 379.4 226 77.0
PGSC0003DMG400007327 Solanum tuberosum HOM05D004928 ORTHO05D005901 2.2e-103 379.4 251 68.9
CDE11G0920 Ceratophyllum demersum HOM05D004928 ORTHO05D005901 1.1e-102 377.1 225 76.4
SMO351G0551 Selaginella moellendorffii HOM05D004928 ORTHO05D005901 1.9e-102 376.3 245 68.6
AagrBONN_evm.TU.Sc2ySwM_228.308 Anthoceros agrestis HOM05D004928 ORTHO05D005901 3.2e-102 375.6 248 66.1
Mapoly0113s0023 Marchantia polymorpha HOM05D004928 ORTHO05D005901 4.1e-102 375.2 246 67.1
Pp3c17_20220 Physcomitrium patens HOM05D004928 ORTHO05D005901 2.5e-99 365.9 248 65.3
Haze_05290 Corylus avellana HOM05D004928 ORTHO05D005901 9.5e-99 364.0 236 73.7
SGA_v2.0_scaffold171G38868 Striga asiatica HOM05D004928 ORTHO05D005901 3.1e-97 359.0 252 70.2
Solyc02g081820.3 Solanum lycopersicum HOM05D004928 ORTHO05D005901 3.7e-95 352.1 255 63.9
CSS0044663 Camellia sinensis var. sinensis HOM05D004928 ORTHO05D005901 1.1e-91 340.5 216 75.5
Pp3c8_22630 Physcomitrium patens HOM05D004928 ORTHO05D005901 4.7e-90 335.1 244 61.1
Dinv01021 Davidia involucrata HOM05D004928 ORTHO05D005901 1.8e-89 333.2 205 78.5
Nn2g13837 Nelumbo nucifera HOM05D004928 ORTHO05D005901 5.3e-73 278.5 172 76.2
Nn6g35246 Nelumbo nucifera HOM05D004928 ORTHO05D005901 3.4e-72 275.8 174 73.0
Lalb_Chr15g0083731 Lupinus albus HOM05D004928 ORTHO05D005901 5.4e-70 268.5 248 55.2
Haze_05274 Corylus avellana HOM05D004928 ORTHO05D005901 4.3e-67 258.8 136 81.6
TAR626G1771 Trochodendron aralioides HOM05D004928 ORTHO05D005901 1.4e-57 227.3 113 87.6
Haze_05268 Corylus avellana HOM05D004928 ORTHO05D005901 9.0e-57 224.6 169 67.5
CBR_g46238 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-53 213.8 154 59.1
Haze_05293 Corylus avellana HOM05D004928 ORTHO05D005901 2.7e-53 213.0 190 57.4
Haze_05273 Corylus avellana HOM05D004928 ORTHO05D005901 9.6e-51 204.5 123 78.9
MD05G1245600 Malus domestica HOM05D004928 ORTHO05D005901 3.8e-47 192.6 214 46.7
Cpa.g.sc30.100 Carica papaya HOM05D004928 ORTHO05D005901 2.8e-42 176.4 96 81.2
TWI63G0736 Tripterygium wilfordii HOM05D004928 ORTHO05D005901 3.1e-41 172.9 148 66.2
PRCOL_00004641 Prasinoderma coloniale HOM05D004928 ORTHO05D005901 2.5e-38 163.3 193 44.0
Os02g0173600 Oryza sativa ssp. japonica HOM05D004928 ORTHO05D005901 1.4e-36 157.5 86 77.9
Zm00001eb207070 Zea mays HOM05D004928 ORTHO05D005901 1.4e-36 157.5 223 43.0
Haze_05283 Corylus avellana HOM05D004928 ORTHO05D005901 6.7e-28 128.6 82 72.0
Haze_05288 Corylus avellana HOM05D004928 ORTHO05D005901 3.7e-26 122.9 71 76.1
Haze_05286 Corylus avellana HOM05D004928 ORTHO05D005901 1.1e-25 121.3 71 76.1
Aa31LG9G8830 Aethionema arabicum HOM05D004928 ORTHO05D005901 5.3e-25 119.0 59 78.0
Ca_01984_v3 Cicer arietinum L. HOM05D004928 ORTHO05D005901 4.0e-20 102.8 52 84.6
MD14G1109200 Malus domestica HOM05D004928 ORTHO05D005901 1.2e-16 91.3 49 71.4
TPR.G688 Trifolium pratense HOM05D004928 ORTHO05D005901 2.0e-16 90.5 55 80.0
Cfa025962 Carpinus fangiana HOM05D004928 ORTHO05D005901 3.8e-15 86.3 272 26.5
Psat2g121200 Pisum sativum HOM05D002775 ORTHO05D003262 7.7e-08 62.0 214 27.1
TPR.G37102 Trifolium pratense HOM05D002775 ORTHO05D003262 1.0e-07 61.6 216 25.9
Hund05890 Selenicereus undatus HOM05D002775 ORTHO05D003262 1.7e-07 60.8 210 24.3
TWI12G0226 Tripterygium wilfordii HOM05D002775 ORTHO05D003262 3.8e-07 59.7 211 25.1
Gohir.A12G165600 Gossypium hirsutum HOM05D002775 ORTHO05D003262 5.0e-07 59.3 211 24.6
Gohir.D12G168700 Gossypium hirsutum HOM05D002775 ORTHO05D003262 5.0e-07 59.3 211 24.6
Gorai.008G181500 Gossypium raimondii HOM05D002775 ORTHO05D003262 5.0e-07 59.3 211 24.6
Lj2g0025171 Lotus japonicus HOM05D002775 ORTHO05D003262 5.0e-07 59.3 219 23.7
Medtr7g039510 Medicago truncatula HOM05D002775 ORTHO05D003262 5.0e-07 59.3 209 28.2
CDE05G2768 Ceratophyllum demersum HOM05D002775 ORTHO05D003262 1.1e-06 58.2 127 29.9
MCO02G163 Micromonas commoda HOM05D002775 ORTHO05D003262 1.5e-06 57.8 146 28.1
PSO478G4429 Papaver somniferum HOM05D002775 ORTHO05D003262 2.5e-06 57.0 211 24.6
Sabra10G0066200 Salix brachista HOM05D002775 ORTHO05D003262 3.2e-06 56.6 211 24.2
Sc04g0008210 Simmondsia chinensis HOM05D002775 ORTHO05D003262 3.2e-06 56.6 209 25.4
Ca_04781_v3 Cicer arietinum L. HOM05D002775 ORTHO05D003262 4.2e-06 56.2 213 26.8
Ciclev10032480m.g Citrus clementina HOM05D002775 ORTHO05D003262 4.2e-06 56.2 213 25.8
Hma1.2p1_0598F.1_g186650 Hydrangea macrophylla HOM05D002775 ORTHO05D003262 4.2e-06 56.2 215 23.7
arahy.Tifrunner.gnm1.ann1.BG5WH1 Arachis hypogaea HOM05D002775 ORTHO05D003262 7.2e-06 55.5 218 23.4
Lalb_Chr10g0098201 Lupinus albus HOM05D002775 ORTHO05D003262 7.2e-06 55.5 213 25.8
Thecc.02G350700 Theobroma cacao HOM05D002775 ORTHO05D003262 7.2e-06 55.5 210 23.8
arahy.Tifrunner.gnm1.ann1.7KL7FE Arachis hypogaea HOM05D002775 ORTHO05D003262 9.4e-06 55.1 220 23.2
Duzib251G0721 Durio zibethinus HOM05D002775 ORTHO05D003262 9.4e-06 55.1 214 24.3
Phvul.002G086200 Phaseolus vulgaris HOM05D002775 ORTHO05D003262 9.4e-06 55.1 213 25.4
VMungo1215G1815 Vigna mungo HOM05D002775 ORTHO05D003262 9.4e-06 55.1 212 25.5


User provided reference genes

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