Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.5e-161 572.8 292 100.0
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 7.4e-132 474.2 252 95.6
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 4.6e-118 428.3 291 78.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.2e-113 413.7 292 74.3
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 7.2e-111 404.4 294 72.1
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.6e-110 403.3 291 72.5
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 3.6e-110 402.1 283 72.8
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 5.2e-109 398.3 294 71.1
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.2e-107 392.9 286 71.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.8e-107 392.5 292 69.5
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 4.8e-107 391.7 290 70.7
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.4e-106 389.4 283 71.4
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 3.1e-106 389.0 290 68.6
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 4.1e-106 388.7 291 70.1
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 5.3e-106 388.3 290 70.0
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 2.6e-105 386.0 262 74.4
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.6e-105 386.0 283 71.0
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 3.5e-105 385.6 258 76.4
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 5.9e-105 384.8 283 69.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.3e-104 383.6 285 69.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.3e-104 383.6 285 70.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 6.5e-104 381.3 236 79.2
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 8.5e-104 380.9 285 69.1
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 8.5e-104 380.9 286 69.6
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 2.5e-103 379.4 262 71.8
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.2e-103 379.0 287 69.0
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 5.5e-103 378.3 245 77.1
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 5.5e-103 378.3 284 69.0
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 9.4e-103 377.5 252 75.0
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.2e-102 377.1 227 81.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 3.6e-102 375.6 256 72.3
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 6.1e-102 374.8 310 64.8
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.0e-102 374.4 232 77.6
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 1.4e-101 373.6 285 68.4
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 2.3e-101 372.9 285 67.0
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 3.0e-101 372.5 285 67.4
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 5.2e-101 371.7 282 68.8
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 6.7e-101 371.3 286 68.5
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 8.8e-101 370.9 295 66.4
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 8.8e-101 370.9 252 72.2
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 8.8e-101 370.9 282 68.1
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 2.0e-100 369.8 252 72.6
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.0e-100 369.8 244 73.8
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 2.6e-100 369.4 290 69.7
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 3.3e-100 369.0 243 72.4
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 3.3e-100 369.0 257 71.2
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 7.5e-100 367.9 249 72.3
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 9.7e-100 367.5 252 72.6
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 3.7e-99 365.5 284 66.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 3.7e-99 365.5 288 65.6
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.1e-98 364.0 252 71.8
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.1e-98 364.0 290 67.2
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.4e-98 363.6 268 66.4
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 7.0e-98 361.3 287 66.9
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 9.1e-98 360.9 287 64.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 2.0e-97 359.8 278 66.9
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.5e-97 359.0 287 66.9
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 5.9e-97 358.2 285 66.3
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.7e-96 356.7 268 67.9
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 2.2e-96 356.3 252 67.9
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.9e-96 355.9 263 66.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 2.5e-95 352.8 233 70.8
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 3.2e-95 352.4 290 65.5
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 4.2e-95 352.1 217 77.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 7.2e-95 351.3 257 71.2
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.7e-94 349.4 287 65.9
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 4.7e-94 348.6 267 68.2
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.0e-93 347.4 268 66.4
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-93 347.1 278 66.5
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 8.8e-93 344.4 222 72.1
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 2.6e-92 342.8 248 69.4
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 4.4e-92 342.0 221 71.9
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.3e-91 340.5 291 61.5
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 1.3e-91 340.5 224 70.5
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.7e-91 340.1 220 75.5
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 2.8e-91 339.3 317 60.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.4e-90 337.0 284 63.7
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 1.8e-90 336.7 222 73.4
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 2.4e-90 336.3 210 76.2
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 3.1e-90 335.9 223 71.7
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 4.1e-90 335.5 284 64.4
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.6e-89 333.6 259 68.0
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 1.6e-89 333.6 251 66.9
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 5.9e-89 331.6 266 65.4
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 7.7e-89 331.3 252 69.4
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 1.7e-88 330.1 254 68.9
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 2.5e-87 326.2 287 58.5
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.2e-87 324.7 265 64.2
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.2e-86 323.9 235 69.4
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.8e-85 320.1 191 80.6
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 3.4e-84 315.8 210 71.4
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 3.4e-84 315.8 210 71.4
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 7.5e-84 314.7 226 70.8
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 2.2e-83 313.2 252 63.5
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 2.2e-83 313.2 252 63.5
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.2e-83 313.2 231 70.1
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.1e-82 310.8 347 54.8
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.5e-81 305.8 237 66.7
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.7e-80 303.5 294 57.1
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 4.3e-79 298.9 189 78.8
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 1.6e-78 297.0 283 61.1
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 6.1e-78 295.0 304 54.6
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 1.8e-77 293.5 288 54.9
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 1.5e-76 290.4 186 76.9
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 2.6e-76 289.7 170 81.8
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.3e-75 287.3 234 65.0
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 1.4e-74 283.9 231 65.8
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.9e-73 278.5 219 65.8
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 6.6e-72 275.0 172 77.9
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.0e-69 267.7 166 75.9
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.9e-66 256.9 257 54.9
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.2e-60 237.7 257 49.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.7e-57 226.5 146 74.7
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 2.7e-57 226.5 210 50.5
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 7.8e-57 224.9 136 77.2
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 7.8e-57 224.9 208 51.4
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 1.4e-53 214.2 214 57.0
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 4.0e-53 212.6 212 47.2
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 6.2e-46 188.7 201 48.3
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 2.4e-45 186.8 137 67.9
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 7.6e-44 181.8 105 78.1
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.1e-39 167.9 120 74.2
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 4.0e-29 132.9 198 36.4
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 9.9e-28 128.3 91 72.5
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 3.8e-27 126.3 136 52.9
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.1e-25 120.6 99 59.6
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.8e-24 117.5 99 57.6
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 8.7e-24 115.2 82 62.2
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 2.8e-22 110.2 233 31.8
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.9e-19 100.1 83 60.2
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 3.8e-19 99.8 71 63.4
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.9e-18 97.4 88 64.8
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.1e-17 94.0 86 55.8
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 5.5e-10 69.3 47 70.2
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 2.7e-09 67.0 40 72.5
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 7.9e-09 65.5 52 61.5
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 6.7e-08 62.4 34 85.3
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 8.7e-08 62.0 58 56.9
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 5.7e-07 59.3 52 50.0


User provided reference genes

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