Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.8e-29 131.3 69 100.0
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 3.8e-26 120.9 69 91.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 3.5e-24 114.4 69 85.5
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.5e-19 99.0 77 67.5
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.8e-19 97.1 71 66.2
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 5.8e-19 97.1 72 66.7
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 7.6e-19 96.7 62 72.6
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 9.9e-19 96.3 67 70.1
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 9.9e-19 96.3 72 68.1
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 2.2e-18 95.1 62 69.4
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 2.2e-18 95.1 71 63.4
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 3.8e-18 94.4 71 63.4
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 3.8e-18 94.4 51 84.3
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 3.8e-18 94.4 72 68.1
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.8e-18 94.4 70 64.3
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 3.8e-18 94.4 69 66.7
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 6.4e-18 93.6 73 61.6
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 8.4e-18 93.2 73 61.6
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 8.4e-18 93.2 73 65.8
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.4e-17 92.4 72 61.1
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.4e-17 92.4 72 61.1
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 1.4e-17 92.4 70 65.7
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.4e-17 92.4 63 74.6
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.4e-17 92.4 50 80.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.9e-17 92.0 50 86.0
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 4.2e-17 90.9 62 71.0
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 4.2e-17 90.9 76 59.2
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 5.4e-17 90.5 69 62.3
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 7.1e-17 90.1 74 58.1
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 7.1e-17 90.1 73 58.9
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 7.1e-17 90.1 52 76.9
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 9.3e-17 89.7 73 60.3
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 9.3e-17 89.7 61 68.9
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.2e-16 89.4 74 60.8
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.2e-16 89.4 74 60.8
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 1.2e-16 89.4 76 59.2
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.6e-16 89.0 71 60.6
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.1e-16 88.6 73 58.9
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 2.1e-16 88.6 73 58.9
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.1e-16 88.6 73 58.9
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 2.1e-16 88.6 73 58.9
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 3.5e-16 87.8 70 61.4
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 3.5e-16 87.8 52 76.9
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 4.6e-16 87.4 73 58.9
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 6.0e-16 87.0 66 60.6
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.0e-16 87.0 63 66.7
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 7.8e-16 86.7 72 58.3
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 1.0e-15 86.3 63 66.7
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 1.3e-15 85.9 71 60.6
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 3.0e-15 84.7 65 64.6
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.0e-15 84.7 63 65.1
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 3.0e-15 84.7 68 61.8
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.1e-15 84.0 73 58.9
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.1e-15 84.0 73 58.9
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 5.1e-15 84.0 73 58.9
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 5.1e-15 84.0 73 57.5
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.1e-15 84.0 69 59.4
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 6.6e-15 83.6 50 74.0
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 1.1e-14 82.8 48 77.1
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.5e-14 82.4 49 73.5
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 3.3e-14 81.3 72 58.3
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 4.3e-14 80.9 65 56.9
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.6e-13 79.0 64 64.1
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 1.6e-13 79.0 74 54.1
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 4.8e-13 77.4 52 65.4
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 6.2e-13 77.0 70 51.4
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 8.1e-13 76.6 52 63.5
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 1.4e-12 75.9 49 69.4
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 1.8e-12 75.5 52 63.5
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 2.4e-12 75.1 52 63.5
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.4e-12 75.1 49 73.5
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 5.3e-12 73.9 49 67.3
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.5e-11 72.4 40 75.0
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 2.6e-11 71.6 66 50.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 4.5e-11 70.9 48 68.8
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 5.8e-11 70.5 49 69.4
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 7.6e-11 70.1 64 48.4
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 7.6e-11 70.1 50 58.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 6.4e-10 67.0 66 47.0
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 3.2e-09 64.7 51 54.9
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 4.2e-09 64.3 46 58.7
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 2.1e-08 62.0 35 88.6
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 3.9e-07 57.8 63 50.8
Gohir.D09G144800 Gossypium hirsutum HOM05D009309 ORTHO05D011491 2.5e-06 55.1 65 43.1
Gorai.006G166100 Gossypium raimondii HOM05D009309 ORTHO05D011491 2.5e-06 55.1 65 43.1
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.3e-06 54.7 47 61.7
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 9.6e-06 53.1 48 58.3


User provided reference genes

Program Settings