Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G145700 Populus trichocarpa HOM05D003990 ORTHO05D004925 4.3e-195 684.5 347 100.0
Sabra03G0105900 Salix brachista HOM05D003990 ORTHO05D004925 3.5e-173 611.7 347 90.2
Atru.chr9.1910 Acer truncatum HOM05D003990 ORTHO05D004925 1.2e-133 480.3 314 78.0
Manes.11G125600 Manihot esculenta HOM05D003990 ORTHO05D004925 1.0e-132 477.2 364 68.7
Ciclev10020878m.g Citrus clementina HOM05D003990 ORTHO05D004925 6.3e-130 468.0 356 69.1
Peaxi162Scf00102g01878 Petunia axillaris HOM05D003990 ORTHO05D000951 4.1e-129 465.3 354 70.6
Cfa011935 Carpinus fangiana HOM05D003990 ORTHO05D004925 9.1e-129 464.2 279 81.4
CANSAT21G0847 Cannabis sativa HOM05D003990 ORTHO05D004925 3.5e-128 462.2 368 67.4
TWI60G1311 Tripterygium wilfordii HOM05D003990 ORTHO05D004925 2.2e-127 459.5 354 68.9
Dinv38683 Davidia involucrata HOM05D003990 ORTHO05D001284 3.8e-127 458.8 288 77.4
Cpa.g.sc175.15 Carica papaya HOM05D003990 ORTHO05D004925 6.5e-127 458.0 339 69.6
CSS0021441 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 1.4e-126 456.8 298 77.5
CSS0010282 Camellia sinensis var. sinensis HOM05D003990 ORTHO05D004925 3.2e-126 455.7 300 77.0
CAN.G792.28 Capsicum annuum HOM05D003990 ORTHO05D004925 3.2e-126 455.7 308 74.4
FAN13G1570 Fragaria x ananassa HOM05D003990 ORTHO05D004925 7.2e-126 454.5 354 69.5
Hma1.2p1_0212F.1_g090230 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.2e-126 454.5 292 77.4
Oeu022039.1 Olea europaea HOM05D003990 ORTHO05D004925 2.1e-125 453.0 337 70.0
RcHm_v2.0_Chr7g0186781 Rosa chinensis HOM05D003990 ORTHO05D004925 4.7e-125 451.8 358 67.6
Duzib205G1059 Durio zibethinus HOM05D003990 ORTHO05D004925 1.8e-124 449.9 354 67.8
TAR629G1984 Trochodendron aralioides HOM05D003990 ORTHO05D004925 1.8e-124 449.9 331 71.0
Aqoxy7G00029 Aquilegia oxysepala HOM05D003990 ORTHO05D004925 2.3e-124 449.5 330 71.2
Lsat_1_v5_gn_3_13681 Lactuca sativa HOM05D003990 ORTHO05D004925 3.9e-124 448.7 301 74.4
CiPaw.12G078400 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.0e-123 446.4 362 64.9
HanXRQChr06g0166861 Helianthus annuus HOM05D003990 ORTHO05D004925 4.4e-123 445.3 340 67.9
MD06G1117400 Malus domestica HOM05D003990 ORTHO05D004925 4.4e-123 445.3 360 65.3
Eucgr.D01688 Eucalyptus grandis HOM05D003990 ORTHO05D004925 7.4e-123 444.5 359 65.7
DCAR_009092 Daucus carota HOM05D003990 ORTHO05D004925 9.7e-123 444.1 319 70.2
ECA246G0738 Erigeron canadensis HOM05D003273 ORTHO05D004023 1.7e-122 443.4 284 75.4
PGSC0003DMG400005851 Solanum tuberosum HOM05D003990 ORTHO05D004925 1.7e-122 443.4 365 65.2
Sopen08g004380 Solanum pennellii HOM05D003990 ORTHO05D004925 2.8e-122 442.6 334 68.0
COL.COLO4_10785 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.8e-122 441.8 356 67.1
Solyc08g008530.1 Solanum lycopersicum HOM05D003990 ORTHO05D004925 4.8e-122 441.8 357 65.3
Haze_14077 Corylus avellana HOM05D003990 ORTHO05D004925 8.2e-122 441.0 338 68.0
Gohir.A02G097800 Gossypium hirsutum HOM05D003990 ORTHO05D004925 1.1e-121 440.7 356 66.3
Cc08_g16660 Coffea canephora HOM05D003990 ORTHO05D004925 1.4e-121 440.3 361 64.3
THA.LOC104813054 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 3.1e-121 439.1 322 70.8
QL02p029212 Quercus lobata HOM05D003990 ORTHO05D004925 9.1e-121 437.6 278 77.0
AT4G10750 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.2e-120 437.2 333 70.6
Carub.0006s2953 Capsella rubella HOM05D003990 ORTHO05D004925 1.2e-120 437.2 326 70.6
Prupe.5G128500 Prunus persica HOM05D003990 ORTHO05D004925 1.6e-120 436.8 278 77.7
Thecc.03G222400 Theobroma cacao HOM05D003990 ORTHO05D004925 1.6e-120 436.8 354 65.8
Gorai.003G075400 Gossypium raimondii HOM05D003990 ORTHO05D004925 3.5e-120 435.6 356 65.2
Sc01g0010590 Simmondsia chinensis HOM05D003990 ORTHO05D004925 5.9e-120 434.9 344 67.2
AL6G44800 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 7.7e-120 434.5 333 70.0
Nitab4.5_0000673g0130 Nicotiana tabacum HOM05D003990 ORTHO05D004925 1.7e-119 433.3 336 67.0
CARHR255860 Cardamine hirsuta HOM05D003990 ORTHO05D004925 2.2e-119 433.0 359 66.0
BraA09t38413Z Brassica rapa HOM05D003990 ORTHO05D004925 2.9e-119 432.6 362 64.9
Gohir.D03G086700 Gossypium hirsutum HOM05D003990 ORTHO05D004925 3.8e-119 432.2 356 65.2
Nitab4.5_0001962g0040 Nicotiana tabacum HOM05D003990 ORTHO05D004925 3.8e-119 432.2 317 70.0
BcaC04g21069 Brassica carinata HOM05D003990 ORTHO05D004925 5.0e-119 431.8 362 65.2
C09p36050 Brassica napus HOM05D003990 ORTHO05D004925 5.0e-119 431.8 362 65.2
BolC9t56444H Brassica oleracea HOM05D003990 ORTHO05D004925 5.0e-119 431.8 362 65.2
Thhalv10029450m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 8.5e-119 431.0 365 64.9
Rhsim02G0251300 Rhododendron simsii HOM05D003990 ORTHO05D004925 8.5e-119 431.0 361 66.5
Sp6g06750 Schrenkiella parvula HOM05D003990 ORTHO05D004925 1.1e-118 430.6 335 69.6
Lalb_Chr17g0338551 Lupinus albus HOM05D003990 ORTHO05D004925 1.5e-118 430.3 296 74.3
A09p28480 Brassica napus HOM05D003990 ORTHO05D004925 3.2e-118 429.1 362 64.4
BcaB01g01511 Brassica carinata HOM05D003990 ORTHO05D004925 4.2e-118 428.7 356 65.4
Lj8A201T86 Lonicera japonica HOM05D003990 ORTHO05D004925 2.1e-117 426.4 263 79.1
MELO3C013779.2 Cucumis melo HOM05D003990 ORTHO05D004925 8.0e-117 424.5 309 69.3
CsaV3_3G000920 Cucumis sativus L. HOM05D003990 ORTHO05D004925 5.2e-116 421.8 308 68.5
Aa31LG9G11320 Aethionema arabicum HOM05D003990 ORTHO05D004925 6.8e-116 421.4 354 65.5
PSO384G4439 Papaver somniferum HOM05D003990 ORTHO05D004925 1.2e-115 420.6 368 60.1
MBI12_g30966_MAGBIO Magnolia biondii HOM05D003990 ORTHO05D004925 9.7e-115 417.5 307 69.1
PSO135G0880 Papaver somniferum HOM05D003990 ORTHO05D004925 2.2e-114 416.4 368 61.4
Sed0016376 Sechium edule HOM05D003990 ORTHO05D004925 6.3e-114 414.8 350 63.7
MSTRG.13719 Avicennia marina HOM05D003990 ORTHO05D004925 1.8e-113 413.3 351 63.8
Lj2g0026928 Lotus japonicus HOM05D003990 ORTHO05D004925 1.0e-111 407.5 365 60.0
Ah.12g053140 Amaranthus hybridus HOM05D003990 ORTHO05D004925 1.9e-110 403.3 302 67.5
Cfa011937 Carpinus fangiana HOM05D003990 ORTHO05D004925 2.5e-110 402.9 290 70.3
Nn1g00366 Nelumbo nucifera HOM05D003990 ORTHO05D004925 4.2e-110 402.1 327 65.7
CDE04G2232 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 9.4e-110 401.0 293 67.6
TPR.G36963 Trifolium pratense HOM05D003990 ORTHO05D004925 2.7e-109 399.4 280 70.7
FvH4_5g11021 Fragaria vesca HOM05D003990 ORTHO05D004925 1.0e-108 397.5 363 62.0
Medtr1g031790 Medicago truncatula HOM05D003990 ORTHO05D004925 8.8e-108 394.4 353 60.3
VMungo1215G2928 Vigna mungo HOM05D003990 ORTHO05D004925 7.5e-107 391.3 332 62.7
Phvul.003G021600 Phaseolus vulgaris HOM05D003990 ORTHO05D004925 5.9e-104 381.7 332 60.5
HPP92_008886 Vanilla planifolia HOM05D003990 ORTHO05D004925 2.9e-103 379.4 355 57.2
ATR0620G013 Amborella trichopoda HOM05D003990 ORTHO05D004925 7.2e-102 374.8 345 59.7
CiPaw.11G113600 Carya illinoinensis HOM05D003990 ORTHO05D004925 2.0e-99 366.7 266 68.0
Duzib084G0313 Durio zibethinus HOM05D003990 ORTHO05D004925 2.4e-97 359.8 257 65.4
vmacro11510 Vaccinium macrocarpon HOM05D003990 ORTHO05D004925 4.1e-97 359.0 345 59.1
QL02p029171 Quercus lobata HOM05D003990 ORTHO05D004925 2.0e-96 356.7 261 66.7
COL.COLO4_10784 Corchorus olitorius HOM05D003990 ORTHO05D004925 4.5e-96 355.5 257 66.9
Oeu022040.1 Olea europaea HOM05D003990 ORTHO05D004925 1.0e-95 354.4 260 65.4
Os09g0529900 Oryza sativa ssp. japonica HOM05D003990 ORTHO05D004925 3.9e-95 352.4 303 58.7
Zm00001eb103220 Zea mays HOM05D003990 ORTHO05D004925 1.2e-93 347.4 295 58.3
AUR62019907 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.8e-93 346.3 247 69.6
EL10Ac5g12450 Beta vulgaris HOM05D003990 ORTHO05D004925 1.8e-92 343.6 249 68.3
SEGI_30656 Sequoiadendron giganteum HOM05D003990 ORTHO05D004925 2.0e-91 340.1 312 58.7
QL02p029158 Quercus lobata HOM05D003990 ORTHO05D004925 3.4e-91 339.3 262 64.5
AUR62007043 Chenopodium quinoa HOM05D003990 ORTHO05D004925 2.2e-90 336.7 248 67.7
Ca_12579_v3 Cicer arietinum L. HOM05D003990 ORTHO05D004925 3.7e-90 335.9 241 69.3
Psat6g044760 Pisum sativum HOM05D003990 ORTHO05D004925 2.7e-88 329.7 242 68.2
AUR62019906 Chenopodium quinoa HOM05D003990 ORTHO05D004925 4.6e-88 328.9 263 62.0
Sc01g0010580 Simmondsia chinensis HOM05D003990 ORTHO05D004925 2.3e-87 326.6 262 62.6
Ah.12g053130 Amaranthus hybridus HOM05D003990 ORTHO05D004925 5.0e-87 325.5 266 62.0
AUR62007042 Chenopodium quinoa HOM05D003990 ORTHO05D004925 5.0e-87 325.5 266 62.4
EL10Ac5g12452 Beta vulgaris HOM05D003990 ORTHO05D004925 8.6e-87 324.7 286 59.1
Thhalv10026820m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.6e-86 322.0 266 58.3
A01p15340 Brassica napus HOM05D003990 ORTHO05D004925 3.6e-85 319.3 257 59.1
THA.LOC104815209 Tarenaya hassleriana HOM05D003990 ORTHO05D004925 1.4e-84 317.4 255 60.0
Migut.O00797 Erythranthe guttata HOM05D003990 ORTHO05D004925 1.8e-84 317.0 257 68.1
BolC1t01855H Brassica oleracea HOM05D003990 ORTHO05D004925 3.1e-84 316.2 257 58.8
AL7G29210 Arabidopsis lyrata HOM05D003990 ORTHO05D004925 1.5e-83 313.9 253 60.1
Aa31LG6G7280 Aethionema arabicum HOM05D003990 ORTHO05D004925 2.0e-83 313.5 265 58.1
Carub.0007s1702 Capsella rubella HOM05D003990 ORTHO05D004925 2.0e-83 313.5 255 60.4
COL.COLO4_10783 Corchorus olitorius HOM05D003990 ORTHO05D004925 2.0e-83 313.5 232 66.8
arahy.Tifrunner.gnm1.ann1.LQZ0GD Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-82 309.7 256 57.0
arahy.Tifrunner.gnm1.ann1.ZCAA4H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.9e-82 309.7 256 57.0
C01p19290 Brassica napus HOM05D003990 ORTHO05D004925 2.9e-82 309.7 257 58.0
BraA01t01479Z Brassica rapa HOM05D003990 ORTHO05D004925 8.3e-82 308.1 257 57.6
BcaNung01112 Brassica carinata HOM05D003990 ORTHO05D004925 1.2e-80 304.3 263 55.9
BolC1t01856H Brassica oleracea HOM05D003990 ORTHO05D004925 1.6e-80 303.9 318 50.3
A01p15350 Brassica napus HOM05D003990 ORTHO05D004925 3.5e-80 302.8 257 57.2
BcaC09g50914 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-79 300.8 267 55.1
C01p19300 Brassica napus HOM05D003990 ORTHO05D004925 3.9e-79 299.3 257 56.4
arahy.Tifrunner.gnm1.ann1.3SR05H Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-77 293.1 256 54.3
arahy.Tifrunner.gnm1.ann1.UPJ447 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.8e-77 293.1 256 54.3
Haze_09152 Corylus avellana HOM05D003990 ORTHO05D004925 3.6e-77 292.7 192 73.4
arahy.Tifrunner.gnm1.ann1.IT3SMZ Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-76 290.8 258 53.5
arahy.Tifrunner.gnm1.ann1.Y0R09G Arachis hypogaea HOM05D003990 ORTHO05D004925 1.4e-76 290.8 258 53.5
BraA01t01478Z Brassica rapa HOM05D003990 ORTHO05D004925 1.4e-76 290.8 257 56.4
CARHR006280 Cardamine hirsuta HOM05D003990 ORTHO05D004925 4.4e-75 285.8 230 60.0
Pp3c17_4700 Physcomitrium patens HOM05D003990 ORTHO05D004925 5.8e-75 285.4 252 55.6
BcaC09g50915 Brassica carinata HOM05D003990 ORTHO05D004925 1.3e-74 284.3 231 58.0
AagrBONN_evm.TU.Sc2ySwM_117.985 Anthoceros agrestis HOM05D003990 ORTHO05D004925 5.4e-73 278.9 250 56.4
Glyma.07G166800 Glycine max HOM05D003990 ORTHO05D004925 2.7e-72 276.6 177 75.7
Mapoly0141s0022 Marchantia polymorpha HOM05D003990 ORTHO05D004925 2.5e-70 270.0 250 56.8
Thhalv10027122m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 5.2e-68 262.3 258 50.8
Sc16g0011220 Simmondsia chinensis HOM05D003990 ORTHO05D004925 4.2e-65 252.7 248 52.8
Thecc.03G222500 Theobroma cacao HOM05D003990 ORTHO05D004925 7.1e-65 251.9 176 68.8
unitig_52.g17196 Utricularia gibba HOM05D003990 ORTHO05D004925 1.0e-63 248.1 187 65.2
CARHR006270 Cardamine hirsuta HOM05D003990 ORTHO05D004925 1.7e-63 247.3 229 52.8
arahy.Tifrunner.gnm1.ann1.VJUY72 Arachis hypogaea HOM05D003990 ORTHO05D004925 2.3e-63 246.9 255 51.4
arahy.Tifrunner.gnm1.ann1.E0UK9T Arachis hypogaea HOM05D003990 ORTHO05D004925 3.0e-63 246.5 255 51.4
arahy.Tifrunner.gnm1.ann1.UE00R2 Arachis hypogaea HOM05D003990 ORTHO05D004925 5.1e-63 245.7 244 51.2
Potri.001G084900 Populus trichocarpa HOM05D003990 ORTHO05D004925 6.9e-60 235.3 188 65.4
CDE07G1159 Ceratophyllum demersum HOM05D003990 ORTHO05D004925 4.9e-58 229.2 344 43.3
QL02p029191 Quercus lobata HOM05D003990 ORTHO05D004925 1.6e-56 224.2 397 37.5
Zm00001eb207470 Zea mays HOM05D003990 ORTHO05D004925 2.7e-56 223.4 275 45.5
Sp7g22040 Schrenkiella parvula HOM05D003990 ORTHO05D004925 5.6e-54 215.7 163 62.6
CARHR231480 Cardamine hirsuta HOM05D003990 ORTHO05D004925 9.6e-54 214.9 179 57.0
FAN18G2679 Fragaria x ananassa HOM05D003990 ORTHO05D004925 1.2e-51 208.0 137 74.5
arahy.Tifrunner.gnm1.ann1.QV8INP Arachis hypogaea HOM05D003990 ORTHO05D004925 6.4e-50 202.2 252 44.0
Aa31LG6G7290 Aethionema arabicum HOM05D003990 ORTHO05D004925 1.6e-48 197.6 159 60.4
AT4G24080 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 1.8e-47 194.1 166 56.6
Hma1.2p1_0440F.1_g153760 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 7.6e-43 178.7 195 54.4
Zm00001eb366680 Zea mays HOM05D003990 ORTHO05D004925 2.9e-42 176.8 270 41.9
PRCOL_00003301 Prasinoderma coloniale HOM05D003990 ORTHO05D004925 1.5e-38 164.5 231 39.8
CAN.G479.14 Capsicum annuum HOM05D003990 ORTHO05D004925 1.0e-34 151.8 133 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2729 Anthoceros agrestis HOM05D003990 ORTHO05D004925 7.4e-30 135.6 205 40.5
Zm00001eb314200 Zea mays HOM05D003990 ORTHO05D004925 2.8e-29 133.7 238 36.6
Haze_16436 Corylus avellana HOM05D003990 ORTHO05D004925 3.1e-28 130.2 179 45.3
FAN18G2309 Fragaria x ananassa HOM05D003990 ORTHO05D004925 4.5e-27 126.3 158 52.5
arahy.Tifrunner.gnm1.ann1.R8SYM2 Arachis hypogaea HOM05D003990 ORTHO05D004925 4.6e-24 116.3 122 54.1
Duzib068G0872 Durio zibethinus HOM05D003990 ORTHO05D004925 1.0e-23 115.2 87 64.4
Thhalv10027505m.g Eutrema salsugineum HOM05D003990 ORTHO05D004925 2.3e-23 114.0 110 51.8
Cre01.g015550 Chlamydomonas reinhardtii HOM05D003990 ORTHO05D004925 9.1e-20 102.1 181 36.5
Migut.E00635 Erythranthe guttata HOM05D003990 ORTHO05D004925 7.7e-19 99.0 89 61.8
Cfa021766 Carpinus fangiana HOM05D003990 ORTHO05D004925 1.4e-17 94.7 247 27.9
arahy.Tifrunner.gnm1.ann1.S5BUNY Arachis hypogaea HOM05D003990 ORTHO05D004925 4.2e-17 93.2 65 72.3
EL10Ac6g14266 Beta vulgaris HOM05D003990 ORTHO05D004925 1.4e-15 88.2 69 60.9
unitig_52.g17197 Utricularia gibba HOM05D003990 ORTHO05D004925 2.0e-14 84.3 80 61.2
Hma1.2p1_0212F.1_g090250 Hydrangea macrophylla HOM05D003990 ORTHO05D004925 1.7e-13 81.3 67 59.7
arahy.Tifrunner.gnm1.ann1.228U7D Arachis hypogaea HOM05D003990 ORTHO05D004925 4.8e-13 79.7 68 61.8
Prupe.2G052300 Prunus persica HOM05D003990 ORTHO05D004925 1.2e-11 75.1 66 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3329 Anthoceros agrestis HOM05D003990 ORTHO05D071624 5.0e-10 69.7 262 28.2
QL02p029165 Quercus lobata HOM05D003990 ORTHO05D010865 1.1e-09 68.6 58 60.3
QL02p029160 Quercus lobata HOM05D003990 ORTHO05D004925 3.2e-09 67.0 61 52.5
AT4G24070 Arabidopsis thaliana HOM05D003990 ORTHO05D004925 5.5e-09 66.2 63 52.4
VMungo0647G2082 Vigna mungo HOM05D003990 ORTHO05D004925 8.0e-08 62.4 69 49.3


User provided reference genes

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