Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 2.9e-137 491.9 247 100.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 3.4e-122 441.8 258 88.0
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.7e-116 421.8 254 83.5
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 9.1e-115 417.2 241 85.9
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 2.0e-98 362.8 236 74.6
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.3e-97 360.1 245 72.2
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.2e-97 359.4 245 73.9
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 4.7e-95 351.7 248 72.2
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 8.8e-94 347.4 245 69.8
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 5.7e-93 344.7 243 70.0
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.8e-92 341.7 244 71.3
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.1e-91 340.5 244 70.9
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-90 336.7 254 67.7
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 2.7e-90 335.9 245 68.6
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.3e-89 333.6 247 68.0
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 3.8e-89 332.0 251 68.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 5.0e-89 331.6 242 69.8
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 5.0e-89 331.6 244 68.9
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.9e-88 329.7 236 70.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 3.2e-88 328.9 250 66.8
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.2e-88 328.9 251 66.5
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 3.2e-88 328.9 244 68.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 3.2e-88 328.9 259 66.0
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.2e-88 328.6 243 66.3
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 5.5e-88 328.2 259 65.6
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-87 326.6 246 67.9
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.6e-87 326.6 240 68.8
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.7e-87 325.9 241 68.0
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.7e-87 325.1 244 66.8
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.7e-87 325.1 244 66.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.0e-87 324.3 249 65.9
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.4e-86 323.6 241 67.2
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-86 323.2 237 65.8
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.3e-86 322.8 237 65.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 2.3e-86 322.8 220 74.1
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 3.0e-86 322.4 242 67.8
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 8.8e-86 320.9 244 68.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 8.8e-86 320.9 234 69.7
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-85 320.5 247 68.0
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-85 320.5 247 68.0
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.5e-85 320.1 248 64.9
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 2.6e-85 319.3 248 66.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.4e-85 318.5 256 64.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 5.7e-85 318.2 247 67.6
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.7e-85 318.2 260 65.4
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 9.8e-85 317.4 246 67.1
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-84 317.0 249 67.9
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.3e-84 317.0 248 64.1
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.2e-84 316.2 250 66.4
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 2.8e-84 315.8 245 65.3
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 3.7e-84 315.5 253 67.2
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 3.7e-84 315.5 253 67.2
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.7e-84 315.5 239 67.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.7e-84 315.5 238 66.8
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 6.3e-84 314.7 244 66.8
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 6.3e-84 314.7 244 66.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 8.3e-84 314.3 243 65.4
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.1e-83 313.9 237 67.9
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.4e-83 312.8 237 67.5
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.2e-82 310.5 247 65.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.9e-82 308.1 220 70.0
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 5.9e-82 308.1 247 63.6
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.3e-81 307.0 250 64.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.3e-81 307.0 202 75.2
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.7e-81 306.6 252 65.1
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.9e-80 303.1 237 62.0
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 2.5e-80 302.8 236 64.4
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 5.5e-80 301.6 248 64.9
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 9.5e-80 300.8 246 61.4
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.2e-79 300.4 248 62.5
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 2.8e-79 299.3 239 64.9
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 6.1e-79 298.1 247 64.4
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.8e-78 296.6 243 60.9
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.8e-78 296.6 222 68.0
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 3.0e-78 295.8 245 62.4
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.5e-77 293.5 237 61.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.5e-77 293.5 237 61.2
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 2.6e-77 292.7 246 61.4
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 4.4e-77 292.0 236 63.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 5.7e-77 291.6 238 63.0
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 7.5e-77 291.2 185 76.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 1.7e-76 290.0 187 76.5
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 2.2e-76 289.7 242 64.9
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 6.3e-76 288.1 273 56.8
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.4e-75 287.0 187 74.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.4e-75 287.0 231 63.6
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 3.2e-75 285.8 239 64.9
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 3.2e-75 285.8 220 66.8
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.2e-74 283.9 231 64.9
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.0e-73 280.8 189 74.1
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.0e-73 280.8 264 59.8
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 2.9e-73 279.3 183 76.5
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 6.6e-73 278.1 233 61.4
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 8.6e-73 277.7 267 56.9
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.1e-72 277.3 239 61.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.5e-72 276.9 228 61.8
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-72 276.2 268 56.7
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.3e-72 275.8 189 71.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.3e-72 275.8 186 72.6
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 3.3e-72 275.8 236 58.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.6e-72 275.0 187 72.2
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.6e-72 275.0 236 58.9
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 9.5e-72 274.2 240 58.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.2e-71 273.9 255 58.0
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.6e-71 273.5 265 56.6
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.8e-71 272.7 232 60.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 3.6e-71 272.3 237 62.0
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 3.6e-71 272.3 189 70.4
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.8e-70 270.0 190 70.5
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 4.0e-70 268.9 232 59.5
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 4.0e-70 268.9 238 58.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 8.9e-70 267.7 259 57.1
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 1.2e-69 267.3 190 68.9
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.4e-69 265.4 232 54.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.3e-68 263.8 248 52.0
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.7e-68 263.5 220 60.5
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.2e-68 263.1 244 59.0
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.9e-68 262.7 210 63.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.2e-67 259.2 178 70.8
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 7.0e-67 258.1 185 68.1
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 2.0e-66 256.5 230 57.4
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.7e-66 256.1 180 71.7
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 4.6e-66 255.4 181 68.5
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 3.0e-65 252.7 190 64.7
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 5.0e-65 251.9 194 63.9
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 3.3e-64 249.2 159 77.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 5.2e-62 241.9 184 64.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 1.5e-61 240.4 320 44.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 5.8e-61 238.4 188 65.4
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.8e-61 237.7 178 66.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 9.8e-61 237.7 178 66.9
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.3e-60 237.3 248 52.0
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.3e-60 237.3 189 62.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.7e-60 236.9 184 64.1
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.1e-59 234.2 177 66.1
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 5.4e-59 231.9 227 56.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 9.2e-59 231.1 168 69.0
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 4.6e-58 228.8 193 63.7
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.0e-58 228.4 162 67.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 1.3e-57 227.3 233 52.8
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.1e-56 224.2 157 66.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-54 217.6 139 73.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 8.9e-54 214.5 219 56.2
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 8.9e-54 214.5 219 56.2
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.0e-53 213.4 148 69.6
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.4e-53 212.6 217 54.4
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.9e-51 206.8 126 78.6
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.2e-47 194.1 127 67.7
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.9e-43 180.3 124 71.0
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.7e-42 176.4 208 47.1
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.0e-34 148.7 217 41.0
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 4.8e-31 139.0 116 60.3
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 6.7e-25 118.6 109 65.1
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 4.5e-21 105.9 98 53.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.7e-20 104.0 109 52.3
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 3.2e-19 99.8 75 64.0
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 1.1e-16 91.3 222 28.8
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 7.4e-16 88.6 60 66.7
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 6.9e-14 82.0 48 70.8
TWI15G0174 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 1.8e-06 57.4 38 68.4


User provided reference genes

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