Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.0e-70 267.7 138 100.0
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 5.0e-70 267.7 138 100.0
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 4.1e-64 248.1 127 100.0
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.6e-63 245.4 138 91.3
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 6.8e-43 177.6 140 67.9
Sabra03G0101200 Salix brachista HOM05D007727 ORTHO05D009078 1.2e-39 166.8 137 66.4
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 1.8e-35 152.9 133 63.9
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 8.8e-35 150.6 131 64.9
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 1.9e-29 132.9 130 60.0
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 2.9e-25 119.0 110 58.2
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 5.4e-24 114.8 111 60.4
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 5.4e-24 114.8 111 60.4
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 4.6e-23 111.7 141 46.8
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 2.3e-22 109.4 110 58.2
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.9e-21 106.3 149 45.6
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.9e-21 106.3 149 46.3
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 9.5e-21 104.0 156 44.9
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 2.1e-20 102.8 104 59.6
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 1.0e-19 100.5 118 52.5
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 1.8e-19 99.8 119 52.1
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.3e-19 99.4 120 48.3
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 2.3e-19 99.4 119 52.1
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 2.3e-19 99.4 119 50.4
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.1e-19 99.0 112 49.1
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 5.2e-19 98.2 110 51.8
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 8.9e-19 97.4 145 46.2
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 1.2e-18 97.1 143 45.5
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.6e-18 95.9 139 43.9
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 9.8e-18 94.0 101 52.5
Prupe.5G120300 Prunus persica HOM05D007727 ORTHO05D009078 1.3e-17 93.6 148 42.6
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.7e-17 93.2 143 42.7
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 2.9e-17 92.4 145 44.8
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 4.9e-17 91.7 139 41.7
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 8.3e-17 90.9 121 47.9
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.1e-16 90.5 143 44.1
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.1e-16 90.5 143 44.1
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.1e-16 90.5 144 42.4
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.1e-16 90.5 137 42.3
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.4e-16 89.4 120 45.0
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 7.0e-16 87.8 144 45.8
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 9.2e-16 87.4 131 45.0
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.2e-15 87.0 66 62.1
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 1.2e-15 87.0 66 62.1
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 1.6e-15 86.7 147 42.9
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.6e-15 86.7 147 42.9
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.5e-15 85.5 147 42.2
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 3.5e-15 85.5 117 48.7
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 6.0e-15 84.7 108 51.9
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 1.0e-14 84.0 102 50.0
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.7e-14 83.2 122 45.1
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 2.3e-14 82.8 128 43.8
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.3e-14 82.8 131 41.2
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 3.0e-14 82.4 125 47.2
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 3.0e-14 82.4 102 48.0
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 3.9e-14 82.0 124 44.4
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 3.9e-14 82.0 102 52.0
Eucgr.D01742 Eucalyptus grandis HOM05D007727 ORTHO05D009078 6.6e-14 81.3 65 64.6
Eucgr.D01747 Eucalyptus grandis HOM05D007727 ORTHO05D009078 8.6e-14 80.9 139 41.0
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 8.6e-14 80.9 106 48.1
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.5e-13 80.1 109 50.5
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 5.6e-13 78.2 126 42.1
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 7.3e-13 77.8 78 56.4
Ciclev10022327m.g Citrus clementina HOM05D007727 ORTHO05D009078 2.1e-12 76.3 132 44.7
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 2.8e-12 75.9 104 48.1
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 3.6e-12 75.5 62 62.9
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 3.6e-12 75.5 62 62.9
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 3.6e-12 75.5 107 48.6
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 6.2e-12 74.7 99 46.5
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 8.1e-12 74.3 109 43.1
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 8.1e-12 74.3 62 62.9
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 1.4e-11 73.6 141 39.7
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.8e-11 73.2 100 43.0
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 1.8e-11 73.2 100 43.0
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 2.3e-11 72.8 125 38.4
TAR374G1217 Trochodendron aralioides HOM05D026466 ORTHO05D009078 4.0e-11 72.0 156 37.8
Nitab4.5_0001210g0030 Nicotiana tabacum HOM05D011491 ORTHO05D009078 5.2e-11 71.6 121 39.7
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 1.5e-10 70.1 104 43.3
PGSC0003DMG400012146 Solanum tuberosum HOM05D011491 ORTHO05D009078 9.8e-10 67.4 149 36.2
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 1.7e-09 66.6 97 44.3
ECA240G1351 Erigeron canadensis HOM05D007727 ORTHO05D009078 2.2e-09 66.2 124 39.5
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 2.9e-09 65.9 104 41.3
Sopen08g030640 Solanum pennellii HOM05D011491 ORTHO05D009078 3.7e-09 65.5 47 61.7
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 6.4e-09 64.7 111 40.5
TAR374G1599 Trochodendron aralioides HOM05D026466 ORTHO05D009078 6.4e-09 64.7 162 36.4
PGSC0003DMG400012147 Solanum tuberosum HOM05D011491 ORTHO05D009078 1.4e-08 63.5 146 34.9
Nitab4.5_0002782g0050 Nicotiana tabacum HOM05D011491 ORTHO05D009078 2.4e-08 62.8 100 41.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 4.1e-08 62.0 128 35.9
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 4.1e-08 62.0 94 42.6
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 4.1e-08 62.0 93 41.9
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 7.1e-08 61.2 107 40.2
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 1.6e-07 60.1 134 34.3
Peaxi162Scf00074g00092 Petunia axillaris HOM05D011491 ORTHO05D009078 1.6e-07 60.1 112 41.1
CAN.G1804.6 Capsicum annuum HOM05D011491 ORTHO05D009078 2.7e-07 59.3 50 54.0
MSTRG.25674 Avicennia marina HOM05D007727 ORTHO05D009078 3.5e-07 58.9 96 40.6
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 3.5e-07 58.9 132 35.6
PGSC0003DMG400012144 Solanum tuberosum HOM05D011491 ORTHO05D009078 3.5e-07 58.9 126 38.1
AUR62010842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 6.0e-07 58.2 67 46.3
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 7.8e-07 57.8 131 33.6
Nitab4.5_0002782g0020 Nicotiana tabacum HOM05D011491 ORTHO05D009078 7.8e-07 57.8 96 41.7
AUR62019842 Chenopodium quinoa HOM05D007727 ORTHO05D009078 1.0e-06 57.4 66 43.9
CAN.G1804.7 Capsicum annuum HOM05D011491 ORTHO05D009078 2.3e-06 56.2 48 54.2
PGSC0003DMG400012145 Solanum tuberosum HOM05D011491 ORTHO05D009078 8.6e-06 54.3 141 35.5


User provided reference genes

Program Settings