Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 5.5e-164 581.3 374 100.0
Sabra03G0100600 Salix brachista HOM05D007666 ORTHO05D009567 2.7e-139 499.2 374 76.5
Potri.001G092300 Populus trichocarpa HOM05D007666 ORTHO05D009567 3.1e-127 459.1 374 81.8
Manes.01G049375 Manihot esculenta HOM05D007666 ORTHO05D009567 7.9e-78 295.0 231 69.3
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 3.9e-77 292.7 231 65.8
GSVIVG01019521001 Vitis vinifera HOM05D007666 ORTHO05D009567 1.9e-76 290.4 383 51.4
Ciclev10020669m.g Citrus clementina HOM05D007666 ORTHO05D009567 9.6e-76 288.1 375 47.5
CiPaw.12G083800 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.4e-74 283.5 381 47.0
Dinv38838 Davidia involucrata HOM05D007666 ORTHO05D009567 6.9e-74 282.0 377 47.5
Gorai.003G080900 Gossypium raimondii HOM05D007666 ORTHO05D009567 2.0e-73 280.4 232 62.1
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.6e-73 280.0 232 60.8
Gohir.D03G082600 Gossypium hirsutum HOM05D007666 ORTHO05D009567 5.8e-73 278.9 232 62.1
Cpa.g.sc79.41 Carica papaya HOM05D007666 ORTHO05D009567 9.9e-73 278.1 379 49.3
Duzib068G1371 Durio zibethinus HOM05D007666 ORTHO05D009567 1.7e-72 277.3 232 61.2
Prupe.5G117900 Prunus persica HOM05D007666 ORTHO05D009567 1.4e-71 274.2 379 46.4
Atru.chr9.2008 Acer truncatum HOM05D007666 ORTHO05D009567 3.0e-69 266.5 389 47.0
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.5e-68 264.2 234 62.0
MD06G1105600 Malus domestica HOM05D007666 ORTHO05D009567 1.3e-67 261.2 380 46.3
Hma1.2p1_0229F.1_g097150 Hydrangea macrophylla HOM05D007666 ORTHO05D009567 1.5e-65 254.2 231 61.0
Gohir.A02G101700 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.4e-65 253.1 232 58.6
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 6.5e-64 248.8 234 56.8
ClCG07G014990 Citrullus lanatus HOM05D007666 ORTHO05D009567 1.1e-63 248.1 382 47.9
Actinidia22150 Actinidia chinensis HOM05D007666 ORTHO05D009567 7.1e-63 245.4 231 58.0
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.2e-62 244.6 224 58.0
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 2.1e-62 243.8 231 55.8
Sed0007649 Sechium edule HOM05D007666 ORTHO05D009567 3.5e-62 243.0 225 58.7
Gorai.006G207700 Gossypium raimondii HOM05D007666 ORTHO05D009567 8.7e-61 238.4 223 53.8
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 1.9e-60 237.3 399 47.6
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 3.3e-60 236.5 223 53.8
Gohir.D09G185200 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.3e-59 234.6 223 53.4
TAR636G3598 Trochodendron aralioides HOM05D007666 ORTHO05D009567 2.2e-59 233.8 230 56.1
PSO135G0060 Papaver somniferum HOM05D007666 ORTHO05D009567 1.4e-58 231.1 241 53.5
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 1.4e-58 231.1 242 55.0
PSO384G2287 Papaver somniferum HOM05D007666 ORTHO05D009567 9.0e-58 228.4 238 52.9
CiPaw.11G122000 Carya illinoinensis HOM05D007666 ORTHO05D009567 2.6e-57 226.9 363 44.1
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 5.9e-57 225.7 232 55.6
FAN08G0521 Fragaria x ananassa HOM05D007666 ORTHO05D009567 7.7e-57 225.3 233 55.4
FvH4_5g04480 Fragaria vesca HOM05D007666 ORTHO05D009567 5.0e-56 222.6 233 54.9
FAN18G2245 Fragaria x ananassa HOM05D007666 ORTHO05D009567 5.0e-56 222.6 233 54.9
MSTRG.25667 Avicennia marina HOM05D007666 ORTHO05D009567 1.1e-55 221.5 234 54.3
FAN13G3316 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.9e-55 220.7 233 54.5
FAN18G0717 Fragaria x ananassa HOM05D007666 ORTHO05D009567 1.9e-55 220.7 233 54.5
MBI07_g38452_MAGBIO Magnolia biondii HOM05D007666 ORTHO05D009567 4.2e-55 219.5 229 54.1
vmacro11431 Vaccinium macrocarpon HOM05D007666 ORTHO05D009567 6.7e-53 212.2 351 40.5
Lj2C168T16 Lonicera japonica HOM05D007666 ORTHO05D009567 8.8e-53 211.8 210 56.7
RcHm_v2.0_Chr7g0195021 Rosa chinensis HOM05D007666 ORTHO05D009567 2.5e-52 210.3 367 40.3
Migut.A00661 Erythranthe guttata HOM05D007666 ORTHO05D009567 4.3e-52 209.5 230 53.0
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 5.7e-52 209.1 232 50.0
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 5.7e-52 209.1 232 50.0
Thhalv10023582m.g Eutrema salsugineum HOM05D007666 ORTHO05D009567 3.7e-51 206.5 246 50.4
Peaxi162Scf00074g00106 Petunia axillaris HOM05D007666 ORTHO05D009567 6.3e-51 205.7 232 50.0
SGA_v2.0_scaffold305G47963 Striga asiatica HOM05D007666 ORTHO05D009567 9.1e-50 201.8 240 51.2
Cc08_g15990 Coffea canephora HOM05D007666 ORTHO05D009567 1.2e-49 201.4 235 50.2
PGSC0003DMG400012289 Solanum tuberosum HOM05D007666 ORTHO05D009567 1.2e-49 201.4 232 50.9
EL10Ac5g12908 Beta vulgaris HOM05D007666 ORTHO05D009567 1.5e-49 201.1 232 47.8
Sopen08g030510 Solanum pennellii HOM05D007666 ORTHO05D009567 2.6e-49 200.3 232 49.6
AUR62010832 Chenopodium quinoa HOM05D007666 ORTHO05D009567 7.7e-49 198.7 230 48.7
Hund14226 Selenicereus undatus HOM05D007666 ORTHO05D009567 7.7e-49 198.7 230 49.1
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 2.2e-48 197.2 230 45.7
AL2G10470 Arabidopsis lyrata HOM05D007666 ORTHO05D009567 5.0e-48 196.1 242 49.2
AT1G64385 Arabidopsis thaliana HOM05D007666 ORTHO05D009567 1.1e-47 194.9 245 50.2
COL.COLO4_10690 Corchorus olitorius HOM05D007666 ORTHO05D009567 3.2e-47 193.4 240 48.3
CARHR046550 Cardamine hirsuta HOM05D007666 ORTHO05D009567 1.6e-46 191.0 245 48.6
SpUn0393_0010 Schrenkiella parvula HOM05D007666 ORTHO05D009567 1.6e-46 191.0 246 49.2
Carub.0002s0039 Capsella rubella HOM05D007666 ORTHO05D009567 7.9e-46 188.7 244 47.5
HanXRQChr06g0166511 Helianthus annuus HOM05D007666 ORTHO05D009567 8.8e-45 185.3 387 33.6
DCAR_005041 Daucus carota HOM05D007666 ORTHO05D009567 3.3e-44 183.3 203 50.2
Duzib205G0056 Durio zibethinus HOM05D007666 ORTHO05D009567 3.3e-44 183.3 236 48.3
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 4.4e-44 183.0 234 49.1
THA.LOC104817649 Tarenaya hassleriana HOM05D007666 ORTHO05D009567 4.1e-42 176.4 409 37.4
A09p14330 Brassica napus HOM05D007666 ORTHO05D009567 2.6e-41 173.7 244 47.5
C09p17230 Brassica napus HOM05D007666 ORTHO05D009567 3.5e-41 173.3 243 47.3
BolC9t54623H Brassica oleracea HOM05D007666 ORTHO05D009567 3.5e-41 173.3 243 47.3
ECA246G0366 Erigeron canadensis HOM05D007666 ORTHO05D009567 3.5e-41 173.3 237 42.2
BcaC04g22624 Brassica carinata HOM05D007666 ORTHO05D009567 7.7e-41 172.2 243 46.9
HPP92_005518 Vanilla planifolia HOM05D007666 ORTHO05D009567 7.7e-41 172.2 223 44.4
Lsat_1_v5_gn_3_10540 Lactuca sativa HOM05D007666 ORTHO05D009567 2.2e-40 170.6 237 42.6
BraA09t37080Z Brassica rapa HOM05D007666 ORTHO05D009567 1.4e-39 167.9 244 47.1
Atru.chr2.3612 Acer truncatum HOM05D007666 ORTHO05D009567 1.9e-39 167.5 160 58.1
BcaB07g31505 Brassica carinata HOM05D007666 ORTHO05D009567 7.2e-39 165.6 247 46.6
AUR62019830 Chenopodium quinoa HOM05D007666 ORTHO05D009567 2.1e-38 164.1 198 48.5
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 4.7e-38 162.9 238 44.1
Dinv37538 Davidia involucrata HOM05D007666 ORTHO05D009567 1.1e-36 158.3 110 72.7
MD14G1127900 Malus domestica HOM05D007666 ORTHO05D009567 9.7e-36 155.2 185 48.6
Nn3g19029 Nelumbo nucifera HOM05D007666 ORTHO05D009567 1.1e-34 151.8 157 52.9
Aa31LG2G1390 Aethionema arabicum HOM05D007666 ORTHO05D009567 4.1e-34 149.8 209 46.9
Actinidia04207 Actinidia chinensis HOM05D007666 ORTHO05D009567 3.6e-30 136.7 97 72.2
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 1.0e-24 118.6 233 36.5
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 8.8e-21 105.5 227 34.4
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.5e-20 104.8 200 36.5
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.7e-17 94.0 224 30.4
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 5.0e-16 89.7 222 30.6
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 9.5e-15 85.5 225 31.1
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.6e-14 84.7 224 29.9
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.6e-14 84.7 224 29.9
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.6e-14 84.7 224 29.9
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.8e-14 84.0 194 30.4
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.8e-14 84.0 217 31.8
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 2.8e-14 84.0 222 29.7
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 4.7e-14 83.2 224 29.5
FAN04G1782 Fragaria x ananassa HOM05D007666 ORTHO05D009567 4.7e-14 83.2 232 34.1
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.0e-13 82.0 217 30.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 1.4e-13 81.6 222 31.5
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.3e-13 80.9 227 29.1
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.2e-13 79.7 227 28.6
Solyc08g082240.1 Solanum lycopersicum HOM05D007666 ORTHO05D009567 6.8e-13 79.3 96 47.9
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.9e-13 79.0 226 27.9
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 8.9e-13 79.0 224 27.7
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.2e-12 78.6 228 31.1
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-12 77.8 223 26.9
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.0e-12 77.8 225 29.3
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 2.6e-12 77.4 226 31.0
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.4e-12 77.0 239 28.0
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 3.4e-12 77.0 220 29.1
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 4.4e-12 76.6 215 29.3
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 4.4e-12 76.6 236 30.9
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 4.4e-12 76.6 220 28.6
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 1.3e-11 75.1 229 30.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.7e-11 74.7 219 29.7
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.2e-11 74.3 216 30.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 6.3e-11 72.8 224 23.2
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 8.3e-11 72.4 225 28.0
Mapoly0014s0172 Marchantia polymorpha HOM05D029953 ORTHO05D009567 1.1e-10 72.0 255 29.4
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.1e-10 72.0 222 27.9
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 1.8e-10 71.2 223 27.8
Pp3c14_2620 Physcomitrium patens HOM05D029953 ORTHO05D009567 1.8e-10 71.2 229 31.9
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 2.4e-10 70.9 200 30.0
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 3.2e-10 70.5 215 33.0
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.2e-10 70.5 223 26.9
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 4.1e-10 70.1 220 30.5
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 4.1e-10 70.1 207 30.0
COL.COLO4_10689 Corchorus olitorius HOM05D007666 ORTHO05D009567 5.4e-10 69.7 111 41.4
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 5.4e-10 69.7 215 29.3
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 7.0e-10 69.3 225 28.4
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 1.2e-09 68.6 229 24.9
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 2.0e-09 67.8 233 30.9
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.7e-09 67.4 237 28.7
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 5.9e-09 66.2 198 29.3
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.3e-08 65.1 229 27.5
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.7e-08 64.7 191 28.8
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 2.3e-08 64.3 187 28.3
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 2.3e-08 64.3 229 27.5
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 6.6e-08 62.8 228 27.2
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 6.6e-08 62.8 223 29.6
AagrBONN_evm.TU.Sc2ySwM_368.250 Anthoceros agrestis HOM05D029953 ORTHO05D009567 8.6e-08 62.4 224 24.1
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.5e-07 60.8 159 34.0
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 9.5e-07 58.9 190 29.5
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 9.5e-07 58.9 158 32.3
SMO239G0125 Selaginella moellendorffii HOM05D007666 ORTHO05D009567 3.6e-06 57.0 226 29.2
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 6.1e-06 56.2 222 25.2


User provided reference genes

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