Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 7.1e-107 390.6 194 100.0
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 1.9e-91 339.3 183 91.8
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 2.2e-68 262.7 195 71.8
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 2.8e-63 245.7 194 69.6
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 3.1e-62 242.3 186 68.3
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 1.2e-61 240.4 194 66.5
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 2.7e-61 239.2 195 63.6
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.0e-60 237.3 194 66.5
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.3e-60 236.9 193 67.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.7e-60 236.5 186 68.3
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 2.2e-60 236.1 193 67.4
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 3.8e-60 235.3 193 67.4
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 5.0e-60 235.0 183 66.7
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 6.5e-60 234.6 193 67.4
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 1.1e-59 233.8 180 67.8
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 2.5e-59 232.6 190 65.8
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 2.7e-58 229.2 194 63.9
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 2.7e-58 229.2 180 67.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 4.7e-58 228.4 200 64.0
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 4.7e-58 228.4 150 78.7
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 8.0e-58 227.6 177 66.7
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 8.0e-58 227.6 178 65.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 1.0e-57 227.3 194 64.9
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.8e-57 226.5 200 63.5
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 2.3e-57 226.1 196 59.7
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 8.8e-57 224.2 201 62.7
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.4e-56 222.2 186 62.9
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 5.7e-56 221.5 135 81.5
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 5.7e-56 221.5 200 63.0
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 5.7e-56 221.5 194 63.9
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 7.5e-56 221.1 196 60.2
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 9.8e-56 220.7 192 64.1
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 1.3e-55 220.3 178 67.4
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 1.3e-55 220.3 165 70.3
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 1.7e-55 219.9 193 64.2
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 2.2e-55 219.5 165 67.9
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 3.7e-55 218.8 215 55.8
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 3.7e-55 218.8 160 71.9
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 6.3e-55 218.0 135 80.7
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 6.3e-55 218.0 197 61.9
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.3e-55 217.6 197 61.9
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 8.3e-55 217.6 197 62.4
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 1.1e-54 217.2 170 70.0
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.8e-54 216.5 165 68.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 1.8e-54 216.5 193 60.1
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.8e-54 216.5 167 70.1
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-54 216.1 197 61.4
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.1e-54 215.3 197 61.9
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 5.4e-54 214.9 168 68.5
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 5.4e-54 214.9 182 63.7
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 1.2e-53 213.8 193 59.6
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 1.2e-53 213.8 142 77.5
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 1.2e-53 213.8 131 81.7
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 2.0e-53 213.0 187 63.1
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 2.0e-53 213.0 193 64.2
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 2.7e-53 212.6 193 62.2
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 2.7e-53 212.6 129 82.9
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 4.5e-53 211.8 193 63.2
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 1.0e-52 210.7 141 74.5
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 2.9e-52 209.1 138 78.3
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 3.8e-52 208.8 125 84.8
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 6.6e-52 208.0 163 66.9
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 6.6e-52 208.0 150 74.0
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.9e-51 206.5 153 69.9
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 1.9e-51 206.5 163 66.3
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 3.3e-51 205.7 203 57.1
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 5.6e-51 204.9 150 71.3
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 7.3e-51 204.5 134 78.4
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 7.3e-51 204.5 143 73.4
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 2.1e-50 203.0 198 57.6
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 2.1e-50 203.0 182 63.7
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 8.0e-50 201.1 148 71.6
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 1.4e-49 200.3 178 63.5
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 1.4e-49 200.3 141 72.3
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 1.8e-49 199.9 178 63.5
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.3e-49 199.5 172 64.5
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 5.2e-49 198.4 172 62.8
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 6.8e-49 198.0 189 59.8
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 6.8e-49 198.0 166 62.7
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 8.9e-49 197.6 138 77.5
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.5e-48 196.8 133 77.4
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 5.7e-48 194.9 178 62.4
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 5.7e-48 194.9 175 62.3
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 7.5e-48 194.5 137 73.0
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.7e-47 193.4 151 68.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.7e-47 193.4 200 57.0
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 2.9e-47 192.6 120 81.7
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 8.3e-47 191.0 140 71.4
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 8.3e-47 191.0 124 75.0
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 3.2e-46 189.1 156 66.0
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 3.2e-46 189.1 127 74.8
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 1.6e-45 186.8 173 62.4
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.0e-45 186.4 128 78.1
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.7e-45 186.0 138 68.8
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.7e-45 186.0 138 68.8
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 2.7e-45 186.0 128 78.1
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 3.5e-45 185.7 129 74.4
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 4.6e-45 185.3 129 74.4
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 4.6e-45 185.3 147 66.7
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 1.5e-43 180.3 125 75.2
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 2.5e-43 179.5 193 54.4
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.0e-41 172.2 196 52.6
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 2.2e-39 166.4 167 59.3
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 8.3e-39 164.5 115 69.6
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 1.7e-36 156.8 213 46.0
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 2.1e-34 149.8 118 64.4
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 2.8e-34 149.4 88 86.4
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 6.2e-34 148.3 116 69.8
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 1.5e-32 143.7 123 64.2
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 7.5e-32 141.4 127 62.2
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 1.3e-31 140.6 124 62.1
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 1.1e-30 137.5 130 60.0
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 3.9e-28 129.0 80 82.5
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 9.5e-27 124.4 117 60.7
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.8e-26 122.9 117 59.0
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.2e-25 118.6 71 81.7
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 5.8e-24 115.2 102 61.8
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.3e-23 114.0 71 80.3
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 8.4e-23 111.3 190 40.5
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 3.2e-22 109.4 68 79.4
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 6.0e-21 105.1 121 51.2
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 1.5e-19 100.5 76 64.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 5.6e-19 98.6 118 50.8
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 7.3e-19 98.2 92 57.6
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 9.6e-19 97.8 64 75.0
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 2.4e-17 93.2 79 63.3
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.6e-16 89.7 103 46.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 9.3e-14 81.3 94 46.8
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 3.1e-09 66.2 56 60.7
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 4.9e-07 58.9 85 43.5
MCO14G438 Micromonas commoda HOM05D006501 ORTHO05D008241 8.4e-07 58.2 85 43.5


User provided reference genes

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