Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 1.5e-62 242.7 119 100.0
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 5.4e-57 224.2 130 86.2
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 1.3e-55 219.5 116 91.4
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 2.3e-55 218.8 116 90.5
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 1.5e-54 216.1 116 90.5
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.5e-54 216.1 113 90.3
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 1.5e-54 216.1 116 90.5
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 4.3e-54 214.5 116 89.7
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.3e-54 214.5 116 89.7
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 7.3e-54 213.8 112 91.1
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 9.6e-54 213.4 116 90.5
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 9.6e-54 213.4 116 90.5
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 1.6e-53 212.6 116 88.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 89.7
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 88.8
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 2.1e-53 212.2 116 87.9
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 2.8e-53 211.8 113 89.4
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 3.6e-53 211.5 116 83.6
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 4.8e-53 211.1 116 87.9
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 4.8e-53 211.1 116 87.9
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 6.2e-53 210.7 113 88.5
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 8.1e-53 210.3 116 87.9
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.4e-52 209.5 116 87.9
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.4e-52 209.5 113 89.4
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 1.8e-52 209.1 113 88.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 1.8e-52 209.1 113 89.4
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 2.4e-52 208.8 113 87.6
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 3.1e-52 208.4 113 88.5
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 3.1e-52 208.4 113 87.6
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 3.1e-52 208.4 118 83.9
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 3.1e-52 208.4 118 88.1
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 5.3e-52 207.6 114 88.6
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 6.9e-52 207.2 116 84.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 6.9e-52 207.2 115 87.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 9.0e-52 206.8 116 86.2
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 9.0e-52 206.8 116 86.2
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 9.0e-52 206.8 116 86.2
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.2e-51 206.5 115 86.1
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 1.5e-51 206.1 116 85.3
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 2.0e-51 205.7 113 87.6
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 2.0e-51 205.7 116 86.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 2.6e-51 205.3 116 82.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.4e-51 204.9 115 85.2
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 5.8e-51 204.1 114 86.8
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 7.6e-51 203.8 114 86.0
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 7.6e-51 203.8 113 87.6
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 7.6e-51 203.8 116 83.6
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 1.3e-50 203.0 115 85.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 82.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 1.3e-50 203.0 116 81.0
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.7e-50 202.6 116 83.6
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 2.2e-50 202.2 115 85.2
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 2.9e-50 201.8 116 83.6
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.8e-50 201.4 116 81.9
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 3.8e-50 201.4 118 83.1
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.8e-50 201.4 116 83.6
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 3.8e-50 201.4 116 83.6
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 3.8e-50 201.4 116 83.6
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 3.8e-50 201.4 115 84.3
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 3.8e-50 201.4 116 82.8
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 4.9e-50 201.1 116 85.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 118 84.7
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 6.4e-50 200.7 118 84.7
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 1.1e-49 199.9 113 85.0
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 5.4e-49 197.6 116 81.9
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 7.1e-49 197.2 114 80.7
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 9.3e-49 196.8 114 82.5
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 9.3e-49 196.8 116 81.9
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 9.3e-49 196.8 112 83.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.6e-48 196.1 113 83.2
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 81.9
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 1.6e-48 196.1 116 81.0
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.7e-48 195.3 114 82.5
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 81.0
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 81.0
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 81.0
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 81.0
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.7e-48 195.3 116 79.3
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 3.5e-48 194.9 119 78.2
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 3.5e-48 194.9 120 79.2
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 4.6e-48 194.5 116 81.0
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 4.6e-48 194.5 116 81.0
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 4.6e-48 194.5 116 81.0
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 4.6e-48 194.5 114 83.3
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 6.0e-48 194.1 112 83.9
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 7.9e-48 193.7 116 80.2
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 7.9e-48 193.7 116 80.2
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 1.0e-47 193.4 116 81.0
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 1.7e-47 192.6 114 82.5
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 2.3e-47 192.2 116 79.3
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 2.3e-47 192.2 116 79.3
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 3.0e-47 191.8 116 79.3
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 3.0e-47 191.8 117 78.6
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 3.9e-47 191.4 117 76.1
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 8.7e-47 190.3 116 78.4
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.1e-46 189.9 118 81.4
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-46 189.9 116 76.7
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 1.1e-46 189.9 119 75.6
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 1.5e-46 189.5 117 77.8
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.3e-46 188.3 117 73.5
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 3.3e-46 188.3 117 73.5
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 7.3e-46 187.2 116 77.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 1.3e-45 186.4 117 78.6
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.1e-45 185.7 116 79.3
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 6.2e-45 184.1 115 78.3
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 6.2e-45 184.1 117 79.5
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 1.1e-44 183.3 125 71.2
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-44 182.6 116 79.3
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 1.8e-44 182.6 166 59.6
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 1.5e-43 179.5 116 72.4
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.4e-43 178.3 99 85.9
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 3.4e-43 178.3 99 85.9
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 3.4e-43 178.3 118 71.2
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 4.5e-43 177.9 116 75.0
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 9.9e-43 176.8 97 87.6
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 4.9e-42 174.5 132 68.2
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 1.1e-41 173.3 97 86.6
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 7.1e-41 170.6 98 85.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 4.6e-40 167.9 99 82.8
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 1.8e-39 166.0 118 74.6
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 2.5e-38 162.2 100 74.0
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 5.6e-38 161.0 120 70.0
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 7.4e-38 160.6 96 82.3
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.1e-36 156.8 97 78.4
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 1.7e-34 149.4 115 60.0
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 2.2e-34 149.1 102 72.5
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 2.9e-34 148.7 100 72.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.4e-33 146.4 109 60.6
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 5.5e-33 144.4 112 59.8
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 2.7e-32 142.1 95 74.7
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 3.3e-30 135.2 115 55.7
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 1.2e-24 116.7 64 84.4
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 1.6e-24 116.3 120 51.7
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 6.1e-24 114.4 63 90.5
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 7.9e-24 114.0 65 86.2
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.3e-23 113.2 65 81.5
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 3.0e-23 112.1 57 93.0
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 1.1e-22 110.2 59 86.4
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 2.5e-22 109.0 68 82.4
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 3.3e-22 108.6 64 78.1
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 7.4e-22 107.5 60 86.7
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 3.7e-21 105.1 61 83.6
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 3.7e-21 105.1 64 79.7
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 1.4e-20 103.2 51 96.1
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 1.8e-20 102.8 51 92.2
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.8e-20 102.8 87 64.4
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 9.0e-20 100.5 57 80.7
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-19 100.1 54 85.2
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 5.9e-19 97.8 109 50.5
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.2e-18 95.9 53 84.9
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 2.9e-18 95.5 130 42.3
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 7.2e-17 90.9 137 38.7
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 3.4e-11 72.0 72 52.8
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 4.5e-11 71.6 50 76.0
Atru.chr9.2072 Acer truncatum HOM05D001461 ORTHO05D005534 3.2e-09 65.5 118 37.3
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 4.2e-09 65.1 35 88.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 3.9e-07 58.5 96 43.8


User provided reference genes

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