Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G132900 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 3039.6 1514 100.0
Sabra03G0095200 Salix brachista HOM05D006693 ORTHO05D008092 0.0e+00 2781.1 1528 91.8
Potri.001G098700 Populus trichocarpa HOM05D006693 ORTHO05D008092 0.0e+00 2526.9 1525 84.1
Manes.02G016800 Manihot esculenta HOM05D006693 ORTHO05D008092 0.0e+00 2046.9 1480 72.0
QL02p033351 Quercus lobata HOM05D006693 ORTHO05D008092 0.0e+00 1969.9 1531 66.3
Cfa012249 Carpinus fangiana HOM05D006693 ORTHO05D008092 0.0e+00 1966.4 1534 67.0
Thecc.03G286900 Theobroma cacao HOM05D006693 ORTHO05D008092 0.0e+00 1938.3 1535 66.0
Atru.chr9.2109 Acer truncatum HOM05D006693 ORTHO05D008092 0.0e+00 1933.7 1530 65.2
Duzib205G0177 Durio zibethinus HOM05D006693 ORTHO05D008092 0.0e+00 1917.1 1533 65.2
Dinv38897 Davidia involucrata HOM05D006693 ORTHO05D008092 0.0e+00 1907.5 1566 64.2
CiPaw.12G089000 Carya illinoinensis HOM05D006693 ORTHO05D008092 0.0e+00 1897.5 1532 65.1
Gorai.003G085400 Gossypium raimondii HOM05D006693 ORTHO05D008092 0.0e+00 1888.6 1525 64.6
MD06G1091700 Malus domestica HOM05D006693 ORTHO05D008092 0.0e+00 1885.5 1530 63.7
Gohir.D03G078700 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1877.4 1525 64.3
GSVIVG01019421001 Vitis vinifera HOM05D006693 ORTHO05D008092 0.0e+00 1877.1 1528 63.6
Prupe.5G106900 Prunus persica HOM05D006693 ORTHO05D008092 0.0e+00 1863.2 1485 65.3
FvH4_5g03240 Fragaria vesca HOM05D006693 ORTHO05D008092 0.0e+00 1857.8 1526 63.3
Haze_08752 Corylus avellana HOM05D006693 ORTHO05D008092 0.0e+00 1851.3 1568 63.2
FAN04G0987 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1848.2 1542 62.6
Ciclev10018484m.g Citrus clementina HOM05D006693 ORTHO05D008092 0.0e+00 1831.2 1533 63.9
RcHm_v2.0_Chr7g0196531 Rosa chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1816.6 1494 63.4
FAN18G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1809.7 1630 59.3
CSS0002391 Camellia sinensis var. sinensis HOM05D006693 ORTHO05D008092 0.0e+00 1798.9 1543 61.9
FAN04G3090 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1776.9 1542 60.8
FAN13G0718 Fragaria x ananassa HOM05D006693 ORTHO05D008092 0.0e+00 1765.4 1622 58.4
Rhsim07G0087200 Rhododendron simsii HOM05D006693 ORTHO05D008092 0.0e+00 1761.5 1563 59.7
Nn6g32458 Nelumbo nucifera HOM05D006693 ORTHO05D008092 0.0e+00 1713.4 1540 59.8
TAR629G1282 Trochodendron aralioides HOM05D006693 ORTHO05D008092 0.0e+00 1671.8 1425 61.9
TPR.G12950 Trifolium pratense HOM05D006693 ORTHO05D008092 0.0e+00 1662.9 1536 57.4
vmacro13975 Vaccinium macrocarpon HOM05D006693 ORTHO05D008092 0.0e+00 1662.9 1537 57.6
THA.LOC104814738 Tarenaya hassleriana HOM05D006693 ORTHO05D008092 0.0e+00 1661.4 1520 57.4
Aqoxy5G04083 Aquilegia oxysepala HOM05D006693 ORTHO05D008092 0.0e+00 1658.3 1544 57.0
Glyma.08G018400 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1657.1 1532 57.5
Eucgr.D01808 Eucalyptus grandis HOM05D006693 ORTHO05D008092 0.0e+00 1656.7 1522 58.5
Glyma.05G212000 Glycine max HOM05D006693 ORTHO05D008092 0.0e+00 1648.3 1534 57.4
VMungo0251G0136 Vigna mungo HOM05D006693 ORTHO05D008092 0.0e+00 1647.5 1532 56.8
Lj4g0019588 Lotus japonicus HOM05D006693 ORTHO05D008092 0.0e+00 1645.6 1535 57.3
Psat7g029760 Pisum sativum HOM05D006693 ORTHO05D008092 0.0e+00 1640.6 1543 56.6
Phvul.002G293300 Phaseolus vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1640.2 1530 56.2
Sp6g06170 Schrenkiella parvula HOM05D006693 ORTHO05D008092 0.0e+00 1633.2 1529 56.9
Gohir.A02G105100 Gossypium hirsutum HOM05D006693 ORTHO05D008092 0.0e+00 1630.9 1360 63.6
Medtr8g098950 Medicago truncatula HOM05D006693 ORTHO05D008092 0.0e+00 1630.5 1534 56.9
PGR031G3028 Punica granatum HOM05D006693 ORTHO05D008092 0.0e+00 1630.2 1531 57.0
AL6G45650 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1619.0 1525 57.0
arahy.Tifrunner.gnm1.ann1.U3KDBF Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1615.1 1545 55.7
arahy.Tifrunner.gnm1.ann1.ILCZ5C Arachis hypogaea HOM05D006693 ORTHO05D008092 0.0e+00 1614.4 1542 55.8
PSO063G3881 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1607.4 1537 56.0
MELO3C016336.2 Cucumis melo HOM05D006693 ORTHO05D008092 0.0e+00 1606.7 1539 56.2
Thhalv10028363m.g Eutrema salsugineum HOM05D006693 ORTHO05D008092 0.0e+00 1606.7 1521 56.3
Ca_10951_v3 Cicer arietinum L. HOM05D006693 ORTHO05D008092 0.0e+00 1603.2 1526 56.5
A09p27880 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1600.9 1519 56.3
PSO170G0731 Papaver somniferum HOM05D006693 ORTHO05D008092 0.0e+00 1597.0 1538 55.5
Lalb_Chr16g0390281 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1594.3 1524 56.4
Lj2A178T45 Lonicera japonica HOM05D006693 ORTHO05D008092 0.0e+00 1592.8 1573 55.6
Cc08_g15300 Coffea canephora HOM05D006693 ORTHO05D008092 0.0e+00 1591.6 1561 56.1
BcaC04g21124 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1589.7 1516 55.9
C09p35290 Brassica napus HOM05D006693 ORTHO05D008092 0.0e+00 1589.7 1516 55.9
BraA09t38356Z Brassica rapa HOM05D006693 ORTHO05D008092 0.0e+00 1589.3 1538 55.6
Lalb_Chr05g0224471 Lupinus albus HOM05D006693 ORTHO05D008092 0.0e+00 1587.4 1524 55.9
BcaB01g01624 Brassica carinata HOM05D006693 ORTHO05D008092 0.0e+00 1578.9 1518 56.3
BolC9t56372H Brassica oleracea HOM05D006693 ORTHO05D008092 0.0e+00 1578.1 1535 55.2
Carub.0006s3015 Capsella rubella HOM05D006693 ORTHO05D008092 0.0e+00 1577.8 1550 55.4
MBI06_g33534_MAGBIO Magnolia biondii HOM05D006693 ORTHO05D008092 0.0e+00 1573.9 1578 55.0
Aa31LG9G10920 Aethionema arabicum HOM05D006693 ORTHO05D008092 0.0e+00 1565.8 1581 54.3
AT4G11270 Arabidopsis thaliana HOM05D006693 ORTHO05D008092 0.0e+00 1560.8 1528 55.7
Migut.A00715 Erythranthe guttata HOM05D006693 ORTHO05D008092 0.0e+00 1550.8 1546 54.3
Sopen08g029940 Solanum pennellii HOM05D006693 ORTHO05D008092 0.0e+00 1548.1 1557 54.1
DCAR_008351 Daucus carota HOM05D006693 ORTHO05D008092 0.0e+00 1535.4 1512 54.8
Sc07g0009850 Simmondsia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1526.1 1533 54.1
Peaxi162Scf00074g01720 Petunia axillaris HOM05D006693 ORTHO05D008092 0.0e+00 1514.6 1544 54.3
Lsat_1_v5_gn_6_84960 Lactuca sativa HOM05D006693 ORTHO05D008092 0.0e+00 1510.4 1525 53.4
PGSC0003DMG400012182 Solanum tuberosum HOM05D006693 ORTHO05D008092 0.0e+00 1510.0 1555 52.7
SGA_v2.0_scaffold173G39133 Striga asiatica HOM05D006693 ORTHO05D008092 0.0e+00 1505.0 1557 53.0
SalBow1G8229 Salvia bowleyana HOM05D006693 ORTHO05D008092 0.0e+00 1502.6 1581 52.4
AUR62010757 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1501.9 1535 53.6
Hund14266 Selenicereus undatus HOM05D006693 ORTHO05D008092 0.0e+00 1498.4 1516 53.2
EL10Ac5g12841 Beta vulgaris HOM05D006693 ORTHO05D008092 0.0e+00 1493.4 1513 52.8
HanXRQChr03g0085981 Helianthus annuus HOM05D006693 ORTHO05D008092 0.0e+00 1483.4 1536 53.1
Oeu059571.2 Olea europaea HOM05D006693 ORTHO05D008092 0.0e+00 1477.6 1556 53.7
MSTRG.11217 Avicennia marina HOM05D006693 ORTHO05D008092 0.0e+00 1475.3 1502 53.7
AUR62019758 Chenopodium quinoa HOM05D006693 ORTHO05D008092 0.0e+00 1470.7 1533 52.6
Solyc08g081640.3 Solanum lycopersicum HOM05D006693 ORTHO05D008092 0.0e+00 1462.6 1553 52.9
Ah.12g051930 Amaranthus hybridus HOM05D006693 ORTHO05D008092 0.0e+00 1446.4 1515 51.0
Sed0010800 Sechium edule HOM05D006693 ORTHO05D008092 0.0e+00 1446.0 1421 54.9
ECA240G0689 Erigeron canadensis HOM05D006693 ORTHO05D008092 0.0e+00 1408.3 1539 50.9
Actinidia27362 Actinidia chinensis HOM05D006693 ORTHO05D008092 0.0e+00 1381.3 1368 55.8
ATR0721G120 Amborella trichopoda HOM05D006693 ORTHO05D008092 0.0e+00 1375.5 1593 49.4
ClCG07G007830 Citrullus lanatus HOM05D006693 ORTHO05D008092 0.0e+00 1369.8 1370 55.2
AL6G45560 Arabidopsis lyrata HOM05D006693 ORTHO05D008092 0.0e+00 1353.2 1457 52.4
CsaV3_4G006130 Cucumis sativus L. HOM05D006693 ORTHO05D008092 0.0e+00 1337.4 1306 55.7
HPP92_021742 Vanilla planifolia HOM05D006693 ORTHO05D008092 0.0e+00 1290.8 1566 46.8
CDE02G1190 Ceratophyllum demersum HOM05D006693 ORTHO05D008092 0.0e+00 1248.0 1553 47.1
Nitab4.5_0007163g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1181.8 1148 56.8
Zm00001eb382730 Zea mays HOM05D006693 ORTHO05D008092 0.0e+00 1145.6 1553 43.4
COL.COLO4_08357 Corchorus olitorius HOM05D006693 ORTHO05D008092 0.0e+00 1129.0 994 60.1
Nitab4.5_0014092g0010 Nicotiana tabacum HOM05D006693 ORTHO05D008092 0.0e+00 1104.4 1114 55.2
AagrBONN_evm.TU.Sc2ySwM_368.1009 Anthoceros agrestis HOM05D006693 ORTHO05D008092 9.1e-258 894.8 1640 36.0
CARHR255320 Cardamine hirsuta HOM05D006693 ORTHO05D008092 9.1e-242 841.6 898 51.6
COL.COLO4_08358 Corchorus olitorius HOM05D006693 ORTHO05D008092 4.3e-199 699.9 499 71.9
Actinidia33729 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.7e-192 677.9 499 70.1
SMO358G0585 Selaginella moellendorffii HOM05D006693 ORTHO05D008092 1.3e-187 661.8 1532 32.0
SEGI_35152 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 6.1e-161 573.2 1031 36.0
Os06g0331300 Oryza sativa ssp. japonica HOM05D006693 ORTHO05D008092 1.8e-144 518.5 689 45.1
Cpa.g.sc180.1 Carica papaya HOM05D006693 ORTHO05D008092 1.1e-117 429.5 398 56.8
SEGI_07995 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 4.6e-76 291.2 592 33.4
FAN08G3186 Fragaria x ananassa HOM05D006693 ORTHO05D008092 2.1e-60 239.2 184 62.5
Cpa.g.sc180.2 Carica papaya HOM05D006693 ORTHO05D008092 1.0e-51 210.3 179 63.7
ClCG07G007840 Citrullus lanatus HOM05D006693 ORTHO05D008092 3.4e-39 168.7 107 71.0
Cpa.g.sc180.5 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-31 142.9 93 66.7
Actinidia27361 Actinidia chinensis HOM05D006693 ORTHO05D008092 1.1e-26 127.1 82 72.0
Cpa.g.sc180.3 Carica papaya HOM05D006693 ORTHO05D008092 2.0e-26 126.3 81 77.8
Cpa.g.c42974 Carica papaya HOM05D006693 ORTHO05D008092 6.3e-25 121.3 81 70.4
SEGI_11223 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.3e-24 118.2 87 67.8
SEGI_38420 Sequoiadendron giganteum HOM05D006693 ORTHO05D008092 5.3e-24 118.2 87 67.8
CAN.G532.47 Capsicum annuum HOM05D006693 ORTHO05D008092 2.6e-23 115.9 89 57.3
Actinidia33728 Actinidia chinensis HOM05D006693 ORTHO05D008092 4.4e-18 98.6 65 76.9
Sabra01G0074000 Salix brachista HOM05D000115 ORTHO05D000464 1.2e-10 73.9 71 62.0


User provided reference genes

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