Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 6.0e-228 793.9 415 100.0
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.6e-212 742.7 415 94.0
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.7e-129 466.8 412 60.7
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.9e-128 463.4 417 63.1
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 5.4e-128 461.8 415 59.3
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 2.0e-127 459.9 415 62.2
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 1.0e-126 457.6 415 59.5
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 1.3e-126 457.2 415 60.5
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 3.0e-126 456.1 415 59.8
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 7.3e-125 451.4 451 55.9
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.7e-124 448.7 413 59.1
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 2.3e-123 446.4 415 59.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.5e-122 443.7 413 58.8
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 5.8e-122 441.8 413 59.8
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.7e-121 440.3 414 58.7
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 2.4e-120 436.4 413 59.8
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 2.4e-120 436.4 416 58.9
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.1e-120 435.6 413 59.8
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 3.5e-119 432.6 416 58.2
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 6.0e-119 431.8 418 58.9
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.7e-118 430.3 416 58.7
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 2.3e-118 429.9 416 58.4
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 6.6e-118 428.3 415 57.6
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 8.6e-118 427.9 414 57.7
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.9e-117 426.8 409 57.7
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 5.6e-117 425.2 418 56.9
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 7.3e-117 424.9 415 55.7
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 6.2e-116 421.8 415 57.6
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 8.1e-116 421.4 418 56.9
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 1.5e-114 417.2 415 56.6
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.1e-112 411.0 418 56.7
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.4e-112 410.6 411 56.4
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.2e-111 407.5 411 54.7
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 1.6e-111 407.1 415 54.9
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 6.0e-111 405.2 422 55.9
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 7.8e-111 404.8 421 54.4
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 2.3e-110 403.3 411 55.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 5.1e-110 402.1 411 55.0
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 5.1e-110 402.1 417 56.4
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 6.6e-110 401.7 417 54.9
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.5e-109 400.6 416 55.3
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 1.9e-109 400.2 413 54.7
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 3.3e-109 399.4 417 55.6
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.6e-109 398.7 415 55.2
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 5.6e-109 398.7 415 56.9
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-108 397.5 415 54.9
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.1e-108 396.7 415 54.7
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 8.1e-108 394.8 416 55.5
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 3.1e-107 392.9 423 54.8
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 4.0e-107 392.5 420 53.8
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 6.9e-107 391.7 418 55.7
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 8.9e-107 391.3 417 54.2
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 8.9e-107 391.3 417 54.0
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.2e-106 391.0 417 55.9
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 2.0e-106 390.2 422 55.7
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.7e-105 387.1 418 53.8
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 1.7e-105 387.1 417 54.4
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.2e-105 386.7 415 54.2
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 8.4e-105 384.8 409 54.0
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 8.4e-105 384.8 440 50.7
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 1.1e-104 384.4 410 52.7
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.1e-104 384.4 415 54.7
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 5.4e-104 382.1 413 51.6
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 7.1e-104 381.7 417 54.4
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 9.3e-104 381.3 419 52.3
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 9.3e-104 381.3 410 55.1
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 9.3e-104 381.3 412 52.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 1.2e-103 380.9 424 55.4
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.6e-103 380.6 415 53.3
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 2.1e-103 380.2 413 54.7
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 4.6e-103 379.0 429 54.8
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 6.0e-103 378.6 410 51.7
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.0e-102 377.9 419 55.1
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 1.0e-102 377.9 418 55.5
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 1.0e-102 377.9 414 52.2
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 1.0e-102 377.9 417 51.3
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.0e-102 377.9 420 52.6
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.3e-102 377.5 423 54.6
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 5.1e-102 375.6 417 51.6
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 6.6e-102 375.2 410 51.2
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 8.7e-102 374.8 415 51.1
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 1.5e-101 374.0 423 54.1
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.5e-101 374.0 415 52.5
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 1.5e-101 374.0 410 51.2
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.5e-101 373.2 422 53.1
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 4.3e-101 372.5 420 53.6
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.6e-100 370.5 428 53.0
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 2.1e-100 370.2 416 52.4
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 2.8e-100 369.8 422 52.6
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 4.8e-100 369.0 426 54.0
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.2e-100 368.6 415 52.3
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.8e-99 367.1 422 51.4
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.6e-98 363.2 415 50.6
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 2.6e-98 363.2 410 50.5
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 4.9e-97 359.0 403 53.6
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 6.4e-97 358.6 421 49.4
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 1.1e-96 357.8 421 52.3
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 9.3e-96 354.8 416 52.9
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 1.1e-93 347.8 438 47.9
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.1e-93 347.8 412 51.2
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 1.9e-93 347.1 418 51.9
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 3.4e-90 336.3 417 48.9
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.7e-89 334.0 394 49.5
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 2.8e-84 316.6 424 48.1
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.3e-81 307.8 408 48.0
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 1.3e-81 307.8 396 47.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 8.4e-81 305.1 367 52.0
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.4e-80 304.3 367 51.0
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.4e-80 304.3 418 46.9
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 2.5e-80 303.5 441 42.9
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 9.3e-80 301.6 415 47.2
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 3.4e-74 283.1 276 56.5
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 1.0e-57 228.4 297 48.8
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 2.0e-53 214.2 429 36.4
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 4.5e-50 203.0 498 32.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 6.5e-49 199.1 259 46.3
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 6.5e-49 199.1 259 46.3
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 6.5e-49 199.1 259 46.3
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 1.2e-47 194.9 408 36.0
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 8.8e-46 188.7 562 30.8
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 3.3e-45 186.8 294 42.9
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.5e-41 172.6 144 66.0
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 1.4e-38 164.9 426 33.8
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 1.4e-38 164.9 223 49.8
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.5e-37 161.4 212 47.2
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 2.0e-37 161.0 144 60.4
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 7.5e-37 159.1 424 31.1
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.6e-31 141.4 145 56.6
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.3e-25 121.7 316 33.2
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.0e-17 94.0 222 33.8
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.5e-16 91.7 373 26.5
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.5e-16 91.7 373 26.5
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 7.3e-16 89.4 83 55.4
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 1.6e-10 71.6 45 73.3
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 6.2e-07 59.7 44 56.8
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 6.8e-06 56.2 75 42.7


User provided reference genes

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