Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G122000 Populus trichocarpa HOM05D023468 ORTHO05D022406 6.3e-97 357.5 183 100.0
Sabra01G0083000 Salix brachista HOM05D023468 ORTHO05D022406 9.8e-74 280.4 180 80.0
Potri.001G109700 Populus trichocarpa HOM05D023468 ORTHO05D022406 2.7e-71 272.3 183 77.6
Sabra03G0086100 Salix brachista HOM05D023468 ORTHO05D022406 4.3e-61 238.4 184 73.4
Ciclev10023580m.g Citrus clementina HOM05D023468 ORTHO05D022406 3.1e-19 99.4 161 40.4
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 4.1e-11 72.4 175 34.9
Ciclev10006511m.g Citrus clementina HOM05D001578 ORTHO05D001207 6.9e-11 71.6 173 31.8
MBI11_g08232_MAGBIO Magnolia biondii HOM05D020019 ORTHO05D000022 9.0e-11 71.2 160 31.2
CSS0037733 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.5e-10 70.5 175 30.3
Cfa015284 Carpinus fangiana HOM05D001578 ORTHO05D001207 7.7e-10 68.2 178 31.5
QL06p012819 Quercus lobata HOM05D001578 ORTHO05D001207 7.7e-10 68.2 177 33.3
Haze_01333 Corylus avellana HOM05D001578 ORTHO05D001207 1.0e-09 67.8 182 30.8
Haze_01338 Corylus avellana HOM05D001578 ORTHO05D001207 1.0e-09 67.8 182 30.8
MBI09_g40718_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 1.3e-09 67.4 175 33.1
QL02p037589 Quercus lobata HOM05D004894 ORTHO05D005689 1.3e-09 67.4 172 29.1
TAR365G0682 Trochodendron aralioides HOM05D001578 ORTHO05D001207 1.3e-09 67.4 186 31.7
MBI09_g02146_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 2.2e-09 66.6 173 33.5
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 2.2e-09 66.6 148 33.8
Thecc.04G304700 Theobroma cacao HOM05D001578 ORTHO05D001207 5.0e-09 65.5 174 31.6
QL02p038558 Quercus lobata HOM05D004894 ORTHO05D005689 8.5e-09 64.7 149 30.9
MBI19_g19941_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.1e-08 64.3 172 31.4
MBI19_g19942_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.1e-08 64.3 172 31.4
Prupe.1G113800 Prunus persica HOM05D001578 ORTHO05D001207 1.1e-08 64.3 173 30.6
Cfa018299 Carpinus fangiana HOM05D004894 ORTHO05D005689 1.4e-08 63.9 135 34.1
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 1.9e-08 63.5 154 29.9
Duzib151G1057 Durio zibethinus HOM05D001578 ORTHO05D001207 2.5e-08 63.2 178 30.9
Duzib052G1048 Durio zibethinus HOM05D001578 ORTHO05D001207 3.2e-08 62.8 151 32.5
TAR636G3366 Trochodendron aralioides HOM05D004113 ORTHO05D005233 3.2e-08 62.8 181 29.3
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 4.2e-08 62.4 176 32.4
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 4.2e-08 62.4 152 32.2
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 4.2e-08 62.4 152 32.2
Glyma.17G035600 Glycine max HOM05D013061 ORTHO05D001207 5.5e-08 62.0 178 30.3
Glyma.17G036400 Glycine max HOM05D001578 ORTHO05D001207 5.5e-08 62.0 173 29.5
COL.COLO4_34581 Corchorus olitorius HOM05D001578 ORTHO05D001207 7.2e-08 61.6 173 30.6
Manes.02G201700 Manihot esculenta HOM05D001578 ORTHO05D001207 7.2e-08 61.6 153 30.1
TAR365G0500 Trochodendron aralioides HOM05D001578 ORTHO05D001207 7.2e-08 61.6 190 31.1
MBI19_g26312_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 1.2e-07 60.8 171 31.6
Rhsim11G0009400 Rhododendron simsii HOM05D001445 ORTHO05D001261 1.2e-07 60.8 182 29.7
Cpa.g.sc9.27 Carica papaya HOM05D001578 ORTHO05D001207 1.6e-07 60.5 173 31.8
MBI11_g08231_MAGBIO Magnolia biondii HOM05D020019 ORTHO05D001207 1.6e-07 60.5 114 32.5
TAR626G0884 Trochodendron aralioides HOM05D004113 ORTHO05D001207 2.1e-07 60.1 177 27.1
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.7e-07 59.7 152 31.6
Lalb_Chr12g0200791 Lupinus albus HOM05D001578 ORTHO05D001207 2.7e-07 59.7 178 30.9
RcHm_v2.0_Chr4g0425861 Rosa chinensis HOM05D001578 ORTHO05D001207 3.6e-07 59.3 171 27.5
TWI34G1211 Tripterygium wilfordii HOM05D004894 ORTHO05D005689 3.6e-07 59.3 142 31.7
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 4.6e-07 58.9 174 29.9
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 4.6e-07 58.9 162 27.8
Cfa018297 Carpinus fangiana HOM05D004894 ORTHO05D005689 6.1e-07 58.5 120 33.3
CSS0047439 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 7.9e-07 58.2 175 26.9
Haze_17777 Corylus avellana HOM05D004894 ORTHO05D005689 7.9e-07 58.2 161 31.7
Lj6g0003953 Lotus japonicus HOM05D001578 ORTHO05D001207 7.9e-07 58.2 172 29.1
TAR636G0184 Trochodendron aralioides HOM05D004113 ORTHO05D005233 7.9e-07 58.2 181 28.7
ATR0693G401 Amborella trichopoda HOM05D001445 ORTHO05D001261 1.0e-06 57.8 185 30.8
FvH4_4g20180 Fragaria vesca HOM05D001578 ORTHO05D001207 1.0e-06 57.8 176 29.5
FAN12G2195 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.0e-06 57.8 176 29.5
MBI04_g11519_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D005233 1.0e-06 57.8 185 28.6
Potri.009G083500 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.0e-06 57.8 119 33.6
Haze_17791 Corylus avellana HOM05D004894 ORTHO05D009560 1.4e-06 57.4 133 33.1
Medtr6g037710 Medicago truncatula HOM05D004894 ORTHO05D005689 1.4e-06 57.4 169 24.9
TAR636G1790 Trochodendron aralioides HOM05D004113 ORTHO05D005233 1.4e-06 57.4 158 29.7
Eucgr.H04067 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.8e-06 57.0 175 29.7
vmacro00361 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 1.8e-06 57.0 181 29.3
Hma1.2p1_0311F.1_g121170 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 2.3e-06 56.6 158 30.4
MBI19_g08236_MAGBIO Magnolia biondii HOM05D004113 ORTHO05D010044 2.3e-06 56.6 175 29.1
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 2.3e-06 56.6 176 29.5
TAR365G1026 Trochodendron aralioides HOM05D001578 ORTHO05D001207 2.3e-06 56.6 120 33.3
TAR633G1609 Trochodendron aralioides HOM05D004113 ORTHO05D005233 2.3e-06 56.6 177 29.9
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 3.0e-06 56.2 170 30.0
MBI19_g26316_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D010317 3.0e-06 56.2 171 30.4
Prupe.8G038100 Prunus persica HOM05D004894 ORTHO05D005689 3.0e-06 56.2 160 27.5
TAR627G0317 Trochodendron aralioides HOM05D008403 ORTHO05D010317 3.0e-06 56.2 166 28.3
CiPaw.16G009500 Carya illinoinensis HOM05D004894 ORTHO05D005689 3.9e-06 55.8 174 27.6
Cc08_g01760 Coffea canephora HOM05D001445 ORTHO05D001261 3.9e-06 55.8 186 28.0
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 3.9e-06 55.8 178 27.0
FAN07G0539 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.9e-06 55.8 176 29.5
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 3.9e-06 55.8 166 27.7
Nn1g08310 Nelumbo nucifera HOM05D008403 ORTHO05D010317 5.1e-06 55.5 168 29.2
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 5.1e-06 55.5 176 29.5
Cpa.g.sc42.138 Carica papaya HOM05D004113 ORTHO05D005233 8.8e-06 54.7 132 30.3
MD13G1150200 Malus domestica HOM05D001578 ORTHO05D001207 8.8e-06 54.7 171 28.1
Psat0s740g0240 Pisum sativum HOM05D001578 ORTHO05D001207 8.8e-06 54.7 185 27.6
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 8.8e-06 54.7 179 27.4


User provided reference genes

Program Settings