Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 4.4e-174 615.1 475 100.0
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.1e-140 504.2 492 77.6
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 6.4e-133 478.4 492 81.5
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 2.8e-112 409.8 477 69.4
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.1e-111 407.9 481 49.7
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 1.3e-109 401.0 485 50.1
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 8.4e-109 398.3 491 57.4
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.2e-107 394.4 486 49.4
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 6.0e-107 392.1 489 69.9
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 7.8e-107 391.7 498 48.4
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 2.3e-106 390.2 480 48.5
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 8.7e-106 388.3 497 70.4
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 1.9e-105 387.1 484 69.6
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.6e-104 384.0 484 49.0
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 3.6e-104 382.9 484 52.5
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 3.6e-104 382.9 483 48.2
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 4.8e-104 382.5 451 69.6
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 6.2e-104 382.1 483 48.4
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 1.4e-103 380.9 489 46.8
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 4.0e-103 379.4 482 47.9
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 4.0e-103 379.4 508 71.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.5e-102 377.5 491 66.2
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 1.5e-102 377.5 479 69.5
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 2.6e-102 376.7 479 69.5
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.4e-102 376.3 475 48.8
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.8e-102 375.6 483 46.4
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 2.9e-101 373.2 497 67.2
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.9e-101 372.5 479 67.8
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 6.4e-101 372.1 458 70.3
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 1.1e-100 371.3 484 70.0
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 2.4e-100 370.2 454 48.5
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 7.1e-100 368.6 475 47.6
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 1.6e-99 367.5 475 51.6
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 1.3e-98 364.4 487 70.6
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 1.3e-98 364.4 480 46.7
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 3.0e-98 363.2 485 63.3
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 3.0e-98 363.2 456 48.5
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 9.6e-97 358.2 492 57.7
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 9.6e-97 358.2 489 68.5
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.3e-96 357.8 519 69.4
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 1.4e-95 354.4 488 68.4
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.1e-95 353.2 488 68.4
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 4.0e-95 352.8 484 59.5
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 6.9e-95 352.1 484 45.5
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 9.0e-95 351.7 479 64.1
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 1.5e-94 350.9 483 66.7
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.6e-94 350.1 498 67.5
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.6e-94 350.1 477 71.9
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 5.8e-94 349.0 490 55.5
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 9.9e-94 348.2 522 42.7
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 1.3e-93 347.8 509 63.7
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 2.9e-93 346.7 466 45.7
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 6.4e-93 345.5 448 60.0
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 3.2e-92 343.2 486 47.5
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 3.5e-91 339.7 478 50.8
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 6.7e-90 335.5 482 43.8
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 7.4e-89 332.0 481 54.3
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 9.6e-89 331.6 474 53.2
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 2.1e-88 330.5 466 44.8
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 2.8e-88 330.1 483 43.7
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 2.8e-88 330.1 488 43.6
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.1e-87 328.2 502 63.9
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 1.8e-87 327.4 487 56.1
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 4.0e-87 326.2 483 46.0
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 2.9e-85 320.1 483 41.4
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 1.6e-83 314.3 482 42.1
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 2.7e-83 313.5 454 46.7
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 2.7e-83 313.5 457 42.5
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 7.9e-83 312.0 452 43.4
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.3e-82 311.2 534 52.8
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 3.9e-82 309.7 503 53.7
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 6.7e-82 308.9 438 43.4
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 8.7e-82 308.5 459 42.0
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.5e-81 307.0 480 40.0
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 5.7e-81 305.8 476 46.0
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 5.7e-81 305.8 476 46.0
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 4.8e-80 302.8 465 51.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 6.3e-80 302.4 378 74.9
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 8.2e-80 302.0 433 51.7
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 6.9e-79 298.9 495 41.4
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 2.0e-78 297.4 478 51.7
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 2.6e-78 297.0 478 51.0
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 4.5e-78 296.2 482 41.5
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 7.6e-78 295.4 478 52.1
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 1.3e-77 294.7 476 39.9
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 6.5e-77 292.4 414 44.4
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 2.5e-76 290.4 486 47.1
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 9.3e-76 288.5 475 50.5
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 2.7e-75 287.0 417 43.4
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 2.3e-74 283.9 479 56.2
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 3.0e-74 283.5 481 57.2
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 3.3e-73 280.0 509 44.8
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 9.7e-73 278.5 501 48.3
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 2.8e-72 276.9 439 46.0
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 6.9e-71 272.3 479 48.9
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 5.9e-70 269.2 419 41.5
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 5.0e-69 266.2 495 37.4
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 9.4e-68 261.9 482 50.6
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 1.8e-66 257.7 479 56.8
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 3.0e-66 256.9 570 50.7
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 5.1e-66 256.1 477 41.9
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 2.6e-65 253.8 458 37.3
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.7e-64 251.1 469 37.5
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 4.8e-64 249.6 437 37.3
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.3e-64 249.2 517 49.3
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 6.3e-64 249.2 517 49.3
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 2.4e-63 247.3 575 49.6
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 2.4e-63 247.3 476 36.6
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 2.6e-62 243.8 489 37.6
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.3e-61 241.5 479 49.3
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.1e-60 238.4 493 43.6
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.6e-59 234.6 478 51.0
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 2.3e-58 230.7 411 44.3
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.2e-56 222.2 139 79.9
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 1.6e-54 218.0 476 41.2
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.3e-53 214.9 503 44.9
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.7e-53 214.5 181 65.2
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 3.8e-53 213.4 489 35.8
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 4.2e-52 209.9 449 33.9
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 2.1e-51 207.6 149 71.8
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 5.2e-50 203.0 415 41.4
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 6.3e-48 196.1 124 79.8
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 7.7e-46 189.1 139 69.8
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.7e-41 172.9 445 33.7
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 2.3e-34 151.0 110 69.1
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.4e-33 146.7 499 36.3
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 3.5e-30 137.1 161 49.7
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 1.4e-23 115.2 76 72.4
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.4e-23 115.2 74 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 7.3e-20 102.8 393 30.0
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 6.8e-18 96.3 109 46.8
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 6.0e-14 83.2 80 47.5
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 1.0e-13 82.4 152 33.6


User provided reference genes

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