Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G108000 Populus trichocarpa HOM05D004234 ORTHO05D004670 1.6e-258 895.6 461 100.0
Sabra03G0074900 Salix brachista HOM05D004234 ORTHO05D004670 2.1e-229 798.9 443 93.2
Potri.001G125700 Populus trichocarpa HOM05D004234 ORTHO05D004670 6.0e-221 770.8 464 88.6
Manes.06G133800 Manihot esculenta HOM05D004234 ORTHO05D004670 3.0e-188 662.1 461 77.7
Hma1.2p1_0432F.1_g151850 Hydrangea macrophylla HOM05D004234 ORTHO05D004670 1.6e-184 649.8 464 76.3
QL09p005405 Quercus lobata HOM05D004234 ORTHO05D004670 6.1e-181 637.9 463 74.3
Dinv06568 Davidia involucrata HOM05D004234 ORTHO05D004670 5.7e-179 631.3 464 74.4
CSS0018772 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 5.9e-176 621.3 462 73.4
TWI39G0359 Tripterygium wilfordii HOM05D004234 ORTHO05D004670 1.2e-173 613.6 457 73.5
Thecc.03G153900 Theobroma cacao HOM05D004234 ORTHO05D004670 1.0e-172 610.5 449 73.7
GSVIVG01014047001 Vitis vinifera HOM05D004234 ORTHO05D004670 4.0e-172 608.6 417 77.7
RcHm_v2.0_Chr1g0331961 Rosa chinensis HOM05D004234 ORTHO05D004670 4.4e-171 605.1 420 77.6
Actinidia13581 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.1e-169 600.5 462 72.1
Actinidia31776 Actinidia chinensis HOM05D004234 ORTHO05D004670 1.4e-169 600.1 460 71.3
Ciclev10004769m.g Citrus clementina HOM05D004234 ORTHO05D004670 3.1e-169 599.0 465 69.9
Glyma.09G229600 Glycine max HOM05D004234 ORTHO05D004670 4.1e-169 598.6 444 71.6
CsaV3_3G050070 Cucumis sativus L. HOM05D004234 ORTHO05D004670 1.2e-168 597.0 466 71.0
MD07G1252500 Malus domestica HOM05D004234 ORTHO05D004670 1.0e-167 594.0 421 76.0
Gohir.A03G059300 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.7e-167 593.2 459 71.7
Lalb_Chr01g0000341 Lupinus albus HOM05D004234 ORTHO05D004670 1.7e-167 593.2 442 72.9
Lj1A979T78 Lonicera japonica HOM05D004234 ORTHO05D004670 1.1e-166 590.5 446 72.6
Phvul.011G007500 Phaseolus vulgaris HOM05D004234 ORTHO05D004670 2.5e-166 589.3 457 69.4
PGR042G3222 Punica granatum HOM05D004234 ORTHO05D004670 3.2e-166 589.0 464 70.5
Nn6g33942 Nelumbo nucifera HOM05D004234 ORTHO05D004670 7.2e-166 587.8 458 71.8
Gohir.D03G106600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 1.2e-165 587.0 425 75.5
COL.COLO4_14105 Corchorus olitorius HOM05D004234 ORTHO05D004670 2.1e-165 586.3 441 73.0
MD01G1182200 Malus domestica HOM05D004234 ORTHO05D004670 8.0e-165 584.3 441 71.9
VMungo1127G0923 Vigna mungo HOM05D004234 ORTHO05D004670 2.3e-164 582.8 452 69.5
arahy.Tifrunner.gnm1.ann1.WXBJ4D Arachis hypogaea HOM05D004234 ORTHO05D004670 3.0e-164 582.4 455 69.9
Prupe.2G276000 Prunus persica HOM05D004234 ORTHO05D004670 3.0e-164 582.4 419 74.9
Lj3g0001566 Lotus japonicus HOM05D004234 ORTHO05D004670 4.0e-164 582.0 448 70.1
Duzib084G1335 Durio zibethinus HOM05D004234 ORTHO05D004670 1.2e-163 580.5 443 73.1
Sed0010040 Sechium edule HOM05D004234 ORTHO05D004670 1.5e-163 580.1 429 72.3
arahy.Tifrunner.gnm1.ann1.11333K Arachis hypogaea HOM05D004234 ORTHO05D004670 2.6e-163 579.3 459 69.1
Psat7g159560 Pisum sativum HOM05D004234 ORTHO05D004670 4.4e-163 578.6 461 68.8
ClCG09G013080 Citrullus lanatus HOM05D004234 ORTHO05D004670 5.7e-163 578.2 458 69.4
Oeu028187.2 Olea europaea HOM05D004234 ORTHO05D004670 5.7e-163 578.2 468 69.0
Medtr4g036835 Medicago truncatula HOM05D004234 ORTHO05D004670 1.3e-162 577.0 451 69.4
Sopen03g024080 Solanum pennellii HOM05D004234 ORTHO05D004670 4.9e-162 575.1 461 68.5
FAN03G3162 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.3e-162 574.7 424 74.5
FAN10G4258 Fragaria x ananassa HOM05D004234 ORTHO05D004670 1.4e-161 573.5 420 75.5
Atru.chr1.756 Acer truncatum HOM05D004234 ORTHO05D004670 3.1e-161 572.4 463 69.8
FvH4_7g05310 Fragaria vesca HOM05D004234 ORTHO05D004670 3.1e-161 572.4 456 70.6
DCAR_014620 Daucus carota HOM05D004234 ORTHO05D004670 5.9e-160 568.2 453 69.8
Gorai.003G113100 Gossypium raimondii HOM05D004234 ORTHO05D004670 5.9e-160 568.2 438 71.9
Solyc03g093300.3 Solanum lycopersicum HOM05D004234 ORTHO05D004670 1.0e-159 567.4 453 68.9
Migut.F00484 Erythranthe guttata HOM05D004234 ORTHO05D004670 3.8e-159 565.5 425 72.7
MELO3C003311.2 Cucumis melo HOM05D004234 ORTHO05D004670 5.0e-159 565.1 525 62.5
Sed0020354 Sechium edule HOM05D004234 ORTHO05D004670 1.1e-158 563.9 419 72.6
unitig_46.g18765 Utricularia gibba HOM05D004234 ORTHO05D004670 5.6e-158 561.6 449 69.9
SalBow8G0184 Salvia bowleyana HOM05D004234 ORTHO05D004670 7.3e-158 561.2 471 67.7
SalBow8G4519 Salvia bowleyana HOM05D004234 ORTHO05D004670 7.3e-158 561.2 471 67.7
TAR636G1879 Trochodendron aralioides HOM05D004234 ORTHO05D004670 1.6e-157 560.1 461 69.0
Eucgr.H04780 Eucalyptus grandis HOM05D004234 ORTHO05D004670 2.8e-157 559.3 439 71.1
Sc19g0002070 Simmondsia chinensis HOM05D004234 ORTHO05D004670 3.6e-157 558.9 440 69.5
Gohir.A12G198000 Gossypium hirsutum HOM05D004234 ORTHO05D004670 4.7e-157 558.5 448 66.7
Aqoxy5G04150 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 1.8e-156 556.6 456 68.4
Aqoxy1G01638 Aquilegia oxysepala HOM05D004234 ORTHO05D004670 3.0e-156 555.8 456 68.4
ECA233G5771 Erigeron canadensis HOM05D004234 ORTHO05D004670 1.5e-155 553.5 424 70.3
Glyma.12G006700 Glycine max HOM05D004234 ORTHO05D004670 2.0e-155 553.1 435 69.4
Gohir.D12G200600 Gossypium hirsutum HOM05D004234 ORTHO05D004670 2.0e-155 553.1 408 71.8
Gorai.008G215700 Gossypium raimondii HOM05D004234 ORTHO05D004670 2.0e-155 553.1 408 71.8
Cc02_g04370 Coffea canephora HOM05D004234 ORTHO05D004670 3.4e-155 552.4 422 71.8
HanXRQChr05g0142531 Helianthus annuus HOM05D004234 ORTHO05D004670 7.5e-155 551.2 446 67.3
Peaxi162Scf00241g00030 Petunia axillaris HOM05D004234 ORTHO05D004670 7.5e-155 551.2 446 67.5
AUR62015488 Chenopodium quinoa HOM05D004234 ORTHO05D004670 5.4e-153 545.0 488 63.1
Thhalv10004229m.g Eutrema salsugineum HOM05D004234 ORTHO05D004670 1.6e-152 543.5 448 68.1
PSO238G0034 Papaver somniferum HOM05D004234 ORTHO05D004670 1.6e-152 543.5 464 65.7
Prupe.2G276100 Prunus persica HOM05D004234 ORTHO05D004670 2.0e-152 543.1 416 69.2
AT5G61450 Arabidopsis thaliana HOM05D004234 ORTHO05D004670 7.8e-152 541.2 430 69.3
Carub.0008s2213 Capsella rubella HOM05D004234 ORTHO05D004670 7.8e-152 541.2 430 68.6
Nitab4.5_0002816g0120 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.0e-151 540.8 453 65.6
Rhsim09G0190900 Rhododendron simsii HOM05D004234 ORTHO05D004670 1.0e-151 540.8 578 57.6
SGA_v2.0_scaffold2G01218 Striga asiatica HOM05D004234 ORTHO05D004670 1.7e-151 540.0 476 65.3
Sp2g24650 Schrenkiella parvula HOM05D004234 ORTHO05D004670 1.1e-150 537.3 448 67.0
BolC7t45034H Brassica oleracea HOM05D004234 ORTHO05D004670 3.3e-150 535.8 446 66.6
BcaC06g33234 Brassica carinata HOM05D004234 ORTHO05D004670 9.5e-150 534.3 446 66.6
C07p45120 Brassica napus HOM05D004234 ORTHO05D004670 2.1e-149 533.1 446 66.4
A03p47040 Brassica napus HOM05D004234 ORTHO05D004670 4.7e-149 531.9 445 67.0
BraA03t13827Z Brassica rapa HOM05D004234 ORTHO05D004670 4.7e-149 531.9 445 67.0
Ca_25531_v3 Cicer arietinum L. HOM05D004234 ORTHO05D004670 6.2e-149 531.6 458 65.5
ATR0317G048 Amborella trichopoda HOM05D004234 ORTHO05D004670 4.0e-148 528.9 437 69.3
Lsat_1_v5_gn_1_117561 Lactuca sativa HOM05D004234 ORTHO05D004670 6.8e-148 528.1 444 67.1
HPP92_020352 Vanilla planifolia HOM05D004234 ORTHO05D004670 6.8e-148 528.1 472 63.6
AL8G38140 Arabidopsis lyrata HOM05D004234 ORTHO05D004670 2.0e-147 526.6 432 67.6
Zm00001eb404400 Zea mays HOM05D004234 ORTHO05D004670 2.6e-147 526.2 427 67.9
Os03g0102400 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 4.6e-144 515.4 411 67.2
BcaC06g33149 Brassica carinata HOM05D004234 ORTHO05D004670 6.6e-143 511.5 451 64.3
Os07g0466200 Oryza sativa ssp. japonica HOM05D004234 ORTHO05D004670 1.9e-142 510.0 406 68.0
Nn1g00980 Nelumbo nucifera HOM05D004234 ORTHO05D004670 1.6e-141 506.9 452 64.8
Aa31LG11G1950 Aethionema arabicum HOM05D004234 ORTHO05D004670 3.6e-141 505.8 453 63.6
Hund11832 Selenicereus undatus HOM05D004234 ORTHO05D004670 3.6e-141 505.8 438 66.9
PSO210G3536 Papaver somniferum HOM05D004234 ORTHO05D004670 3.1e-140 502.7 459 63.6
MD07G1252600 Malus domestica HOM05D004234 ORTHO05D004670 1.2e-139 500.7 395 68.4
Ah.07g207720 Amaranthus hybridus HOM05D004234 ORTHO05D004670 2.6e-139 499.6 473 61.9
Lsat_1_v5_gn_9_51980 Lactuca sativa HOM05D004234 ORTHO05D004670 1.3e-138 497.3 449 63.5
EL10Ac3g05852 Beta vulgaris HOM05D004234 ORTHO05D004670 3.5e-136 489.2 463 62.0
Medtr1g056720 Medicago truncatula HOM05D004234 ORTHO05D004670 3.0e-135 486.1 369 69.9
Nitab4.5_0003490g0020 Nicotiana tabacum HOM05D004234 ORTHO05D004670 2.5e-134 483.0 416 63.7
RcHm_v2.0_Chr1g0374151 Rosa chinensis HOM05D004234 ORTHO05D004670 1.1e-132 477.6 408 60.5
FvH4_7g27310 Fragaria vesca HOM05D004234 ORTHO05D004670 2.0e-131 473.4 409 60.4
Duzib205G0275 Durio zibethinus HOM05D004234 ORTHO05D004670 3.4e-131 472.6 379 69.9
FAN06G0557 Fragaria x ananassa HOM05D004234 ORTHO05D004670 9.9e-131 471.1 409 60.6
Mapoly0072s0015 Marchantia polymorpha HOM05D004234 ORTHO05D004670 1.3e-130 470.7 520 52.7
Lsat_1_v5_gn_8_8740 Lactuca sativa HOM05D004234 ORTHO05D004670 1.1e-129 467.6 473 58.8
Pp3c2_13380 Physcomitrium patens HOM05D004234 ORTHO05D004670 1.5e-126 457.2 435 58.9
AagrBONN_evm.TU.Sc2ySwM_117.258 Anthoceros agrestis HOM05D004234 ORTHO05D004670 7.3e-126 454.9 434 58.3
Pp3c14_12080 Physcomitrium patens HOM05D004234 ORTHO05D004670 3.6e-125 452.6 416 60.1
CiPaw.04G059200 Carya illinoinensis HOM05D004234 ORTHO05D004670 4.7e-125 452.2 341 74.2
FAN01G2714 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.2e-125 451.8 424 62.5
AUR62002211 Chenopodium quinoa HOM05D004234 ORTHO05D004670 3.1e-124 449.5 377 66.8
Pp3c17_11550 Physcomitrium patens HOM05D004234 ORTHO05D004670 5.2e-124 448.7 441 57.6
FAN03G0204 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.1e-120 436.8 421 56.3
Lsat_1_v5_gn_1_117520 Lactuca sativa HOM05D004234 ORTHO05D004670 1.5e-118 430.6 439 58.1
Nitab4.5_0000262g0110 Nicotiana tabacum HOM05D004234 ORTHO05D004670 9.6e-118 427.9 416 60.3
CAN.G48.41 Capsicum annuum HOM05D004234 ORTHO05D004670 2.4e-116 423.3 410 59.0
Peaxi162Scf00304g01343 Petunia axillaris HOM05D004234 ORTHO05D004670 1.3e-114 417.5 376 61.4
FAN06G1565 Fragaria x ananassa HOM05D004234 ORTHO05D004670 6.4e-114 415.2 369 59.3
SMO357G0012 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 6.4e-114 415.2 416 56.5
FAN03G2107 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.0e-111 406.4 378 57.4
FAN10G3280 Fragaria x ananassa HOM05D002503 ORTHO05D004670 3.9e-111 406.0 378 57.7
Lj8A43G57 Lonicera japonica HOM05D004234 ORTHO05D004670 1.6e-109 400.6 382 61.3
CAN.G330.4 Capsicum annuum HOM05D004234 ORTHO05D004670 1.1e-108 397.9 361 60.7
Sabra01G0096800 Salix brachista HOM05D004234 ORTHO05D004670 4.5e-107 392.5 296 72.6
C07p40880 Brassica napus HOM05D004234 ORTHO05D004670 7.6e-107 391.7 383 59.8
BolC7t44614H Brassica oleracea HOM05D004234 ORTHO05D004670 1.5e-102 377.5 376 58.2
CBR_g12525 Chara braunii HOM05D004234 ORTHO05D004670 5.1e-95 352.4 579 41.5
BcaNung02453 Brassica carinata HOM05D004234 ORTHO05D004670 7.4e-94 348.6 349 57.3
FAN10G1071 Fragaria x ananassa HOM05D004234 ORTHO05D004670 2.2e-90 337.0 451 47.0
Solyc06g034180.2 Solanum lycopersicum HOM05D004234 ORTHO05D004670 2.2e-85 320.5 334 54.8
PGSC0003DMG400021593 Solanum tuberosum HOM05D004234 ORTHO05D004670 1.3e-82 311.2 412 46.1
SMO203G0101 Selaginella moellendorffii HOM05D004234 ORTHO05D004670 2.5e-81 307.0 325 53.5
CARHR275210 Cardamine hirsuta HOM05D004234 ORTHO05D004670 7.4e-78 295.4 280 58.2
arahy.Tifrunner.gnm1.ann1.EHKS3S Arachis hypogaea HOM05D004234 ORTHO05D004670 1.0e-74 285.0 303 56.8
Nitab4.5_0000448g0090 Nicotiana tabacum HOM05D004234 ORTHO05D004670 3.9e-71 273.1 291 55.3
Lsat_1_v5_gn_1_117540 Lactuca sativa HOM05D004234 ORTHO05D004670 4.5e-67 259.6 290 53.1
Cpa.g.sc4200.1 Carica papaya HOM05D004234 ORTHO05D004670 1.2e-59 235.0 121 95.9
Haze_13877 Corylus avellana HOM05D004234 ORTHO05D004670 1.3e-58 231.5 192 67.7
SHI13981 Sapria himalayana HOM05D004234 ORTHO05D004670 1.5e-54 218.0 286 50.0
vmacro09913 Vaccinium macrocarpon HOM05D004234 ORTHO05D004670 4.4e-54 216.5 257 53.3
Cre03.g201000 Chlamydomonas reinhardtii HOM05D004234 ORTHO05D004670 1.3e-45 188.3 347 34.0
CSS0026342 Camellia sinensis var. sinensis HOM05D004234 ORTHO05D004670 1.4e-44 184.9 138 73.2
Sopen06g015930 Solanum pennellii HOM05D004234 ORTHO05D000001 9.2e-44 182.2 237 46.0
arahy.Tifrunner.gnm1.ann1.J8KP6L Arachis hypogaea HOM05D004234 ORTHO05D004670 5.6e-41 172.9 138 70.3
arahy.Tifrunner.gnm1.ann1.AYL6ZU Arachis hypogaea HOM05D004234 ORTHO05D004670 8.0e-40 169.1 140 70.0
Cpa.g.c29748.2 Carica papaya HOM05D004234 ORTHO05D004670 2.0e-35 154.5 121 73.6
FvH4_c2g00051 Fragaria vesca HOM05D004234 ORTHO05D004670 3.2e-28 130.6 174 51.7
FvH4_2g12100 Fragaria vesca HOM05D004234 ORTHO05D004670 5.4e-28 129.8 114 64.0
FvH4_3g27272 Fragaria vesca HOM05D004234 ORTHO05D004670 7.3e-25 119.4 167 50.3
Cpa.g.sc111.54 Carica papaya HOM05D004234 ORTHO05D004670 1.2e-24 118.6 141 51.8
arahy.Tifrunner.gnm1.ann1.F7NEP8 Arachis hypogaea HOM05D004234 ORTHO05D004670 6.2e-24 116.3 85 74.1
SEGI_04441 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 1.5e-22 111.7 66 86.4
BolC1t03363H Brassica oleracea HOM05D004234 ORTHO05D004670 4.4e-22 110.2 74 70.3
Dinv16843 Davidia involucrata HOM05D004234 ORTHO05D004670 7.5e-22 109.4 69 76.8
FvH4_5g28373 Fragaria vesca HOM05D004234 ORTHO05D004670 9.9e-22 109.0 209 44.0
SEGI_30601 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.2e-20 104.0 58 87.9
Migut.L01142 Erythranthe guttata HOM05D004234 ORTHO05D004670 7.1e-20 102.8 93 61.3
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 4.3e-17 93.6 51 86.3
SEGI_33806 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 9.5e-17 92.4 74 59.5
Lsat_1_v5_gn_5_94641 Lactuca sativa HOM05D004234 ORTHO05D004670 2.8e-16 90.9 70 64.3
Haze_13878 Corylus avellana HOM05D004234 ORTHO05D004670 1.4e-15 88.6 85 61.2
Gorai.009G415200 Gossypium raimondii HOM05D004234 ORTHO05D004670 1.8e-15 88.2 51 84.3
Gorai.012G056500 Gossypium raimondii HOM05D004234 ORTHO05D004670 8.9e-15 85.9 51 82.4
Gohir.D04G050932 Gossypium hirsutum HOM05D004234 ORTHO05D004670 3.4e-14 84.0 55 76.4
Actinidia24997 Actinidia chinensis HOM05D004234 ORTHO05D004670 6.4e-13 79.7 84 58.3
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.4e-12 78.6 51 76.5
SEGI_09779 Sequoiadendron giganteum HOM05D004234 ORTHO05D004670 3.0e-10 70.9 68 55.9
Peaxi162Scf00304g01326 Petunia axillaris HOM05D004234 ORTHO05D004670 2.5e-09 67.8 86 52.3
PRCOL_00000881 Prasinoderma coloniale HOM05D004234 ORTHO05D004670 5.6e-09 66.6 81 53.1
Rhsim06G0134300 Rhododendron simsii HOM05D000157 ORTHO05D000311 3.6e-08 63.9 36 88.9
Nitab4.5_0003490g0040 Nicotiana tabacum HOM05D004234 ORTHO05D004670 1.8e-07 61.6 41 70.7
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 9.9e-06 55.8 73 50.7


User provided reference genes

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