Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 1.3e-182 642.9 316 100.0
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 3.2e-173 611.7 317 96.5
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 1.0e-166 590.1 317 92.1
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.7e-166 589.3 317 92.4
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 2.2e-166 589.0 315 92.4
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 3.8e-166 588.2 383 80.2
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 4.6e-164 581.3 316 91.5
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 6.1e-164 580.9 317 90.5
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 6.7e-163 577.4 317 90.9
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.1e-162 576.6 317 90.5
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 2.0e-162 575.9 317 90.2
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 2.5e-162 575.5 317 90.5
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 2.8e-161 572.0 316 89.2
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 1.8e-160 569.3 317 88.0
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 1.8e-160 569.3 317 89.6
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 89.8
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 1.8e-160 569.3 317 88.3
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 2.4e-160 568.9 317 88.6
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 4.1e-160 568.2 317 87.7
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 9.1e-160 567.0 315 88.6
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 9.1e-160 567.0 317 88.6
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 88.9
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 1.2e-159 566.6 315 88.6
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.5e-159 566.2 318 87.4
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 1.5e-159 566.2 318 89.0
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 2.0e-159 565.8 315 88.6
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 2.0e-159 565.8 317 87.7
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 2.6e-159 565.5 317 89.3
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 2.6e-159 565.5 317 87.7
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 4.5e-159 564.7 317 89.0
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.0e-158 563.5 317 88.3
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 2.2e-158 562.4 317 88.0
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 3.8e-158 561.6 317 86.8
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 6.5e-158 560.8 317 87.7
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 6.5e-158 560.8 316 87.0
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 6.5e-158 560.8 317 88.3
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.4e-157 559.7 318 87.7
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.4e-157 559.7 317 87.1
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 1.4e-157 559.7 317 88.6
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 1.9e-157 559.3 315 87.6
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 1.9e-157 559.3 317 88.0
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 1.9e-157 559.3 317 88.0
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 3.2e-157 558.5 317 86.1
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 3.2e-157 558.5 317 87.4
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 4.2e-157 558.1 317 87.7
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 5.5e-157 557.8 317 87.7
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 7.2e-157 557.4 317 86.8
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 9.4e-157 557.0 317 85.8
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 2.7e-156 555.4 316 86.7
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 3.6e-156 555.1 316 87.3
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 4.7e-156 554.7 317 87.4
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.7e-156 554.7 318 87.4
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 4.7e-156 554.7 318 87.4
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 6.1e-156 554.3 317 87.4
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 7.9e-156 553.9 340 82.9
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 7.9e-156 553.9 332 84.0
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.0e-155 553.5 318 87.7
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 2.3e-155 552.4 316 86.4
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.9e-155 551.6 318 86.8
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.8e-155 550.4 316 86.7
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 8.8e-155 550.4 317 86.4
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 8.8e-155 550.4 317 86.4
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 8.8e-155 550.4 317 85.5
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 1.1e-154 550.1 314 85.4
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.5e-154 549.7 317 86.1
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 2.0e-154 549.3 316 85.4
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 2.6e-154 548.9 317 85.8
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 9.7e-154 547.0 316 84.5
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 1.3e-153 546.6 316 84.8
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.7e-153 546.2 316 84.5
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.7e-153 546.2 317 83.9
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 2.2e-153 545.8 320 84.1
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 4.8e-153 544.7 317 84.5
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 4.8e-153 544.7 317 84.9
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 6.3e-153 544.3 324 84.9
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 8.2e-153 543.9 316 86.1
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 8.2e-153 543.9 317 83.0
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 8.2e-153 543.9 316 84.2
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 1.1e-152 543.5 317 85.5
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 1.8e-152 542.7 316 85.1
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 3.1e-152 542.0 318 85.8
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 3.1e-152 542.0 318 85.8
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 5.3e-152 541.2 317 85.5
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 2.0e-151 539.3 317 83.3
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 2.0e-151 539.3 316 84.8
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 4.5e-151 538.1 318 84.9
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 7.7e-151 537.3 314 83.8
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 7.7e-151 537.3 317 83.0
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 1.3e-150 536.6 318 83.3
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 5.0e-150 534.6 319 84.6
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 5.0e-150 534.6 307 84.7
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 5.0e-150 534.6 319 85.9
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 8.5e-150 533.9 311 85.9
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 8.5e-150 533.9 318 83.0
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 1.4e-149 533.1 319 85.6
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.4e-149 533.1 319 85.6
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 1.4e-149 533.1 319 85.0
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.9e-149 532.7 319 85.6
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.9e-149 532.7 317 84.9
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 2.5e-149 532.3 316 83.9
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-149 532.3 319 85.3
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-149 531.6 319 85.3
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 4.2e-149 531.6 319 85.3
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.1e-148 529.3 317 85.5
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 8.0e-148 527.3 316 83.5
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 1.8e-147 526.2 312 84.0
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.9e-147 525.0 339 78.8
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 6.7e-147 524.2 320 83.4
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 3.7e-145 518.5 286 87.8
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 8.2e-145 517.3 311 83.9
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 1.6e-143 513.1 320 82.5
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 5.9e-143 511.1 316 82.0
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.0e-142 510.4 323 79.6
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 2.9e-142 508.8 289 86.2
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.5e-141 505.8 316 82.0
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 1.8e-139 499.6 296 82.1
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 8.8e-139 497.3 314 80.6
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 7.5e-138 494.2 317 78.9
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 7.5e-138 494.2 316 78.8
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 9.7e-138 493.8 323 75.5
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 2.2e-137 492.7 317 78.5
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.4e-136 489.2 328 76.2
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 2.4e-136 489.2 285 84.2
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 5.3e-136 488.0 311 78.5
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.0e-136 487.6 284 85.2
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 4.2e-133 478.4 465 58.5
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 3.6e-132 475.3 316 76.3
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 3.3e-125 452.2 313 69.3
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.8e-123 446.4 318 71.7
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 9.2e-120 434.1 264 82.6
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 6.6e-118 427.9 315 69.5
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 8.6e-118 427.6 286 74.1
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 2.5e-117 426.0 242 87.2
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 4.9e-97 358.6 215 81.4
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 3.1e-83 312.8 253 62.1
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 3.5e-79 299.3 178 82.0
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 2.3e-78 296.6 174 83.9
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 2.5e-77 293.1 194 77.8
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 2.4e-75 286.6 314 49.4
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 3.1e-75 286.2 313 48.9
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 1.7e-73 280.4 274 56.6
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 6.7e-70 268.5 165 80.6
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.4e-64 250.8 153 81.7
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.4e-64 250.8 153 81.7
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 7.4e-61 238.4 191 62.8
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 2.4e-59 233.4 301 43.2
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 2.6e-58 229.9 279 47.7
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 1.3e-57 227.6 113 96.5
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 1.7e-57 227.3 186 67.2
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 4.2e-56 222.6 311 41.2
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 1.1e-51 208.0 187 60.4
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 1.6e-47 194.1 302 42.4
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 1.0e-46 191.4 113 78.8
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 1.0e-46 191.4 113 78.8
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 8.8e-46 188.3 113 77.9
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 2.5e-45 186.8 140 68.6
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 7.4e-45 185.3 130 70.8
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.3e-44 182.2 103 83.5
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.1e-43 178.3 151 66.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.0e-41 174.9 144 66.0
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 1.0e-38 164.9 170 55.3
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.1e-37 161.4 180 53.9
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 6.3e-36 155.6 280 35.4
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 1.2e-34 151.4 108 70.4
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.7e-30 135.6 118 65.3
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 8.8e-30 135.2 115 60.9
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.8e-27 127.5 80 80.0
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.8e-27 127.5 80 80.0
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 3.8e-25 119.8 69 82.6
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 6.5e-25 119.0 60 90.0
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 5.7e-21 105.9 72 65.3
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 8.3e-20 102.1 53 90.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 3.1e-19 100.1 117 45.3
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 9.1e-19 98.6 89 58.4
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 2.5e-16 90.5 47 87.2
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 5.5e-16 89.4 52 82.7
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 9.4e-16 88.6 91 61.5
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 6.1e-15 85.9 103 51.5
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 9.1e-11 72.0 44 75.0
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 1.2e-07 61.6 37 67.6
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 1.0e-06 58.5 33 84.8
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.0e-06 58.5 37 64.9
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 6.8e-06 55.8 46 54.3


User provided reference genes

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