Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 6.9e-270 933.3 451 100.0
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 2.6e-229 798.5 479 83.5
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.4e-225 786.2 454 81.7
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 3.0e-225 785.0 450 82.9
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 1.1e-224 783.1 454 80.8
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 3.3e-224 781.6 458 82.1
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 9.7e-224 780.0 454 81.3
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 2.2e-223 778.9 454 81.5
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 4.8e-223 777.7 461 80.3
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.1e-222 775.0 454 80.0
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 9.1e-222 773.5 468 79.5
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 1.2e-221 773.1 457 79.9
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 5.9e-221 770.8 457 80.1
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-220 768.1 458 79.5
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 3.8e-220 768.1 458 79.5
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 7.2e-219 763.8 460 79.3
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 1.2e-218 763.1 456 80.0
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.2e-218 763.1 457 79.4
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 3.6e-218 761.5 446 82.3
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 5.2e-217 757.7 452 79.6
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.5e-216 756.1 456 78.7
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.6e-216 755.4 448 79.7
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.3e-216 755.0 457 77.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 4.4e-216 754.6 457 79.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 3.7e-215 751.5 457 77.0
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 6.3e-215 750.7 455 76.0
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 1.1e-214 750.0 451 77.4
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.8e-214 749.2 459 75.8
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 2.0e-213 745.7 455 75.6
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 5.0e-212 741.1 455 77.4
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.5e-211 739.6 457 76.4
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.1e-210 735.7 447 77.2
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 2.7e-210 735.3 459 75.4
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 1.4e-209 733.0 459 76.5
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.3e-209 732.3 446 77.4
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 5.2e-209 731.1 454 75.6
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 6.8e-209 730.7 455 74.3
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 4.4e-208 728.0 453 75.9
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 5.7e-208 727.6 458 77.1
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 3.1e-206 721.8 458 74.5
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 7.7e-205 717.2 444 78.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.0e-204 716.8 434 78.8
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.5e-203 713.0 428 78.5
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.5e-203 713.0 444 75.9
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.9e-203 712.6 458 74.5
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.5e-203 711.1 458 74.2
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 5.5e-203 711.1 452 74.3
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 1.2e-202 709.9 427 78.0
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.8e-202 708.8 458 74.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.6e-202 708.4 461 74.6
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 6.1e-202 707.6 427 78.7
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.0e-201 706.8 427 78.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.4e-201 706.4 428 77.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 2.6e-200 702.2 454 73.1
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 2.6e-200 702.2 433 76.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.4e-200 701.8 438 75.3
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 7.5e-200 700.7 462 74.2
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 9.8e-200 700.3 438 77.6
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 9.8e-200 700.3 429 78.3
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 2.8e-199 698.7 466 73.4
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 3.7e-199 698.4 432 75.7
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-198 695.7 449 75.3
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 5.4e-198 694.5 428 76.6
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-197 693.3 450 75.3
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.0e-197 692.6 473 71.2
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.9e-197 691.0 454 72.7
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 2.9e-196 688.7 455 70.5
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 1.1e-195 686.8 454 73.1
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.5e-195 686.4 452 72.3
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.3e-195 684.1 408 79.9
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 2.1e-194 682.6 452 71.7
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.0e-194 680.6 445 72.8
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 4.0e-193 678.3 394 79.9
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.2e-192 676.8 450 70.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.8e-192 674.5 461 70.5
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-190 669.5 457 70.5
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 2.3e-188 662.5 469 67.4
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 3.0e-188 662.1 454 71.4
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 1.5e-187 659.8 459 68.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 4.3e-187 658.3 458 68.1
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 4.3e-187 658.3 454 67.4
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 5.6e-187 657.9 456 68.2
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 5.6e-187 657.9 455 69.0
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 7.3e-187 657.5 455 68.4
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 4.7e-186 654.8 458 68.1
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 6.2e-186 654.4 456 67.8
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 8.0e-186 654.1 458 67.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 1.1e-185 653.7 464 68.8
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 1.1e-185 653.7 455 67.7
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.1e-185 653.7 491 66.2
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 5.2e-185 651.4 458 67.7
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 5.2e-185 651.4 458 67.7
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.1e-182 643.7 461 66.4
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 2.1e-181 639.4 458 66.8
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 2.1e-181 639.4 461 67.9
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 7.8e-181 637.5 457 67.4
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 4.3e-179 631.7 389 76.3
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 5.6e-179 631.3 462 68.4
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.1e-178 629.4 365 80.5
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 6.2e-178 627.9 451 67.0
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 4.4e-176 621.7 384 76.6
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 3.7e-175 618.6 469 64.4
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.9e-174 616.3 429 65.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.5e-171 605.9 437 68.2
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 1.5e-168 596.7 530 58.9
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 5.8e-168 594.7 486 61.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 9.2e-166 587.4 403 69.2
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 1.3e-164 583.6 380 74.7
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.7e-164 583.2 420 69.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 5.1e-164 581.6 424 65.6
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 7.3e-163 577.8 474 62.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 1.9e-158 563.1 430 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 2.1e-154 549.7 437 60.0
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 2.4e-153 546.2 434 57.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.0e-152 543.1 450 55.6
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.7e-146 522.3 351 71.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 2.1e-141 506.5 425 59.1
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-139 500.0 481 55.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.0e-128 463.4 482 52.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.9e-128 461.8 290 76.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.4e-124 450.7 290 72.8
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-121 440.7 454 54.6
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 2.4e-121 439.9 346 59.8
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 6.9e-121 438.3 271 77.9
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 6.9e-121 438.3 346 59.8
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 3.6e-117 426.0 418 56.5
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 6.1e-117 425.2 332 64.2
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 3.3e-107 392.9 398 48.2
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 9.4e-94 348.2 204 78.4
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.0e-92 344.7 423 41.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 4.0e-92 342.8 437 41.4
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 2.0e-83 313.9 213 75.1
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 5.7e-83 312.4 277 59.6
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.0e-71 275.0 175 75.4
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 1.2e-56 224.9 119 82.4
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 1.0e-55 221.9 183 60.1
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-55 220.7 217 57.6
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 5.1e-55 219.5 189 56.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.0e-47 193.7 155 61.3
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.4e-41 174.9 241 46.1
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.9e-41 174.5 231 42.0
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.4e-41 174.1 239 46.0
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 2.4e-41 174.1 109 75.2
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 2.3e-39 167.5 198 47.5
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 4.0e-36 156.8 85 83.5
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.9e-33 147.9 94 73.4
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.7e-29 133.7 239 39.7
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.6e-24 118.2 85 68.2
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.5e-24 117.1 71 70.4
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 3.9e-23 113.6 60 85.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.5e-19 101.7 135 39.3
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.8e-18 97.1 70 65.7
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.2e-10 71.2 78 52.6
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 8.5e-10 69.3 77 51.9
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.1e-09 68.9 36 83.3
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 6.1e-08 63.2 55 54.5


User provided reference genes

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