Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 2.4e-69 265.8 177 100.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 2.0e-63 246.1 177 94.9
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 8.6e-59 230.7 177 78.5
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.3e-50 201.8 176 84.7
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 5.6e-50 201.4 240 49.2
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.6e-49 199.9 177 84.2
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 6.2e-49 198.0 168 76.2
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.8e-48 196.4 168 73.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-48 196.4 168 73.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.8e-48 196.4 168 73.2
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 8.9e-48 194.1 179 71.5
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-47 192.6 168 72.6
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.6e-47 192.6 168 74.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 7.6e-47 191.0 177 71.8
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.3e-46 190.3 177 68.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 1.3e-46 190.3 177 68.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.7e-46 189.9 169 84.6
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.7e-46 189.9 178 79.2
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.2e-46 189.5 169 84.6
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.2e-46 189.5 169 84.6
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.8e-46 188.7 168 83.9
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 4.9e-46 188.3 177 70.1
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 2.4e-45 186.0 177 66.1
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 3.2e-45 185.7 168 73.2
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 5.4e-45 184.9 169 71.6
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 1.2e-44 183.7 177 69.5
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.6e-44 183.3 177 78.5
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.0e-43 180.6 180 57.2
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 1.3e-43 180.3 179 77.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 2.3e-43 179.5 164 73.8
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 2.3e-43 179.5 169 69.8
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 5.1e-43 178.3 177 65.0
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 1.5e-42 176.8 160 75.6
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.5e-42 176.0 177 64.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 2.5e-42 176.0 168 80.4
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.5e-42 176.0 167 79.0
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.5e-42 176.0 168 69.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 4.3e-42 175.3 177 79.1
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 7.3e-42 174.5 177 64.4
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 7.3e-42 174.5 168 77.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 9.6e-42 174.1 168 71.4
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 1.3e-41 173.7 177 74.0
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 1.3e-41 173.7 169 79.3
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 2.1e-41 172.9 175 66.3
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 2.1e-41 172.9 177 78.5
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 2.1e-41 172.9 169 78.7
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 177 78.5
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 3.6e-41 172.2 177 78.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 4.8e-41 171.8 161 73.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 8.1e-41 171.0 168 66.7
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 1.1e-40 170.6 160 79.4
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 2.4e-40 169.5 164 79.3
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.4e-40 169.5 168 78.0
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 4.0e-40 168.7 169 67.5
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 4.0e-40 168.7 169 78.7
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 6.9e-40 167.9 169 78.1
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 9.0e-40 167.5 169 68.6
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.2e-39 167.2 177 75.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.5e-39 166.8 169 77.5
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 3.4e-39 165.6 177 65.5
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 5.8e-39 164.9 169 66.3
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 7.6e-39 164.5 168 77.4
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 7.6e-39 164.5 167 65.9
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.6e-39 164.5 171 75.4
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 9.9e-39 164.1 169 76.9
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 9.9e-39 164.1 169 76.9
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.7e-38 163.3 171 64.3
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.2e-38 162.9 161 78.9
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 2.9e-38 162.5 177 63.8
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 3.8e-38 162.2 178 69.1
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 8.4e-38 161.0 167 76.6
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 8.4e-38 161.0 166 79.5
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 1.1e-37 160.6 168 60.7
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.1e-37 160.6 166 63.9
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.4e-37 160.2 176 73.9
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 4.2e-37 158.7 174 73.0
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.2e-37 158.7 170 71.8
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 4.2e-37 158.7 177 71.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 5.4e-37 158.3 174 64.9
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 5.4e-37 158.3 169 62.1
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 9.3e-37 157.5 176 71.0
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 9.3e-37 157.5 170 64.1
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 1.2e-36 157.1 164 77.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.1e-36 156.4 176 72.2
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 2.1e-36 156.4 169 74.6
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.7e-36 156.0 176 71.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.0e-36 154.8 158 78.5
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 6.0e-36 154.8 158 78.5
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 2.3e-35 152.9 174 67.2
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 5.1e-35 151.8 177 71.8
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-34 150.6 168 62.5
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 1.5e-34 150.2 163 63.2
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 1.5e-34 150.2 168 56.5
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 179 63.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 178 71.9
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 2.5e-34 149.4 179 59.8
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.3e-34 149.1 176 51.7
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 5.6e-34 148.3 179 71.5
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 5.6e-34 148.3 183 56.3
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 7.3e-34 147.9 176 51.1
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.3e-33 147.1 160 62.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 1.6e-33 146.7 163 75.5
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.1e-33 146.4 168 61.3
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 2.8e-33 146.0 178 71.3
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 3.6e-33 145.6 170 51.8
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 4.8e-33 145.2 180 70.0
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 6.2e-33 144.8 178 71.3
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.8e-32 143.3 164 59.8
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.8e-32 143.3 180 69.4
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.8e-32 143.3 180 69.4
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 2.4e-32 142.9 178 58.4
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 2.4e-32 142.9 180 68.9
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 2.4e-32 142.9 173 49.1
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.3e-32 141.7 179 70.9
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 5.3e-32 141.7 172 58.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 5.3e-32 141.7 172 58.1
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.0e-32 141.0 167 54.5
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.2e-31 140.6 178 66.9
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-31 140.6 164 58.5
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-31 140.6 164 58.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.2e-31 140.6 164 58.5
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.5e-31 140.2 164 58.5
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 2.0e-31 139.8 166 59.6
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.0e-31 139.8 163 61.3
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.0e-31 139.8 163 61.3
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 3.4e-31 139.0 163 61.3
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.5e-31 138.7 181 68.0
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 7.6e-31 137.9 143 64.3
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 7.6e-31 137.9 138 71.0
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.7e-30 136.7 167 47.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 3.8e-30 135.6 163 51.5
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 8.4e-30 134.4 132 71.2
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 5.4e-29 131.7 160 71.9
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.6e-28 128.6 160 71.2
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 7.9e-28 127.9 149 58.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.9e-27 125.6 146 71.9
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 1.9e-26 123.2 135 65.2
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 9.6e-26 120.9 129 69.0
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 8.1e-25 117.9 145 55.9
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 3.8e-22 109.0 121 66.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 7.1e-21 104.8 152 55.3
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 1.2e-20 104.0 111 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 6.0e-20 101.7 108 46.3
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 6.0e-20 101.7 105 72.4
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 6.7e-19 98.2 105 72.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 8.7e-19 97.8 84 59.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.0e-15 86.7 79 81.0
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 5.5e-13 78.6 81 50.6
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 1.0e-11 74.3 44 77.3
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.1e-10 70.9 48 66.7


User provided reference genes

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