Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.0e-176 621.7 307 100.0
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 2.3e-152 542.3 307 88.6
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 3.2e-125 452.2 311 74.9
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.6e-113 413.3 308 68.8
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 2.8e-105 386.0 297 65.0
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.6e-103 379.4 297 65.7
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 4.4e-103 378.6 290 65.2
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.1e-98 364.0 316 61.1
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.1e-98 364.0 316 61.1
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 7.3e-98 361.3 290 64.5
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 4.8e-97 358.6 295 61.4
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 8.1e-97 357.8 297 62.0
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.5e-95 353.6 297 60.9
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 1.5e-95 353.6 285 63.2
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 5.8e-95 351.7 280 63.6
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 7.6e-95 351.3 295 59.0
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 7.6e-95 351.3 280 63.6
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 9.9e-95 350.9 297 62.6
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 1.3e-94 350.5 297 61.3
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.1e-93 347.4 295 59.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.1e-93 347.4 280 62.9
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 3.2e-93 345.9 290 60.7
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 7.1e-93 344.7 297 59.9
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 2.7e-92 342.8 292 60.3
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 3.5e-92 342.4 288 60.4
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 8.7e-91 337.8 242 74.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 1.5e-90 337.0 276 63.4
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 3.3e-90 335.9 286 59.8
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 4.3e-90 335.5 285 60.0
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 7.4e-90 334.7 305 56.4
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 7.4e-90 334.7 286 59.4
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 1.3e-89 334.0 303 55.8
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 3.6e-89 332.4 305 56.1
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.4e-88 330.5 278 61.2
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 6.9e-88 328.2 290 58.6
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 9.0e-88 327.8 292 58.2
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 2.0e-87 326.6 278 60.4
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 3.4e-87 325.9 244 66.4
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 5.8e-87 325.1 301 58.5
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 1.7e-86 323.6 306 55.2
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 2.9e-86 322.8 302 55.6
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 6.4e-86 321.6 303 57.1
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 9.3e-85 317.8 306 54.9
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 4.6e-84 315.5 285 58.9
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.3e-83 313.2 277 58.5
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 3.9e-83 312.4 303 56.4
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 6.7e-83 311.6 281 56.9
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 7.4e-82 308.1 280 56.8
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 7.4e-82 308.1 280 56.8
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 1.3e-81 307.4 281 56.6
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 2.1e-81 306.6 252 59.9
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 3.7e-81 305.8 230 64.3
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 6.2e-81 305.1 305 52.8
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 2.4e-80 303.1 291 54.6
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-79 300.4 291 53.6
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 3.4e-79 299.3 222 66.2
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 5.8e-79 298.5 303 53.1
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 7.6e-79 298.1 291 53.6
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 1.0e-78 297.7 284 54.9
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 2.2e-78 296.6 285 54.0
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 2.9e-78 296.2 306 54.6
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 6.5e-78 295.0 304 52.3
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 8.4e-78 294.7 298 54.0
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 8.4e-78 294.7 298 54.0
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.1e-77 294.3 297 51.9
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 1.1e-77 294.3 282 55.7
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 3.2e-77 292.7 282 53.5
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 5.5e-77 292.0 263 55.9
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 9.3e-77 291.2 304 51.3
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 1.6e-76 290.4 298 53.7
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 2.7e-76 289.7 297 50.8
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 6.0e-76 288.5 280 52.9
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 1.8e-75 287.0 279 53.0
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 3.0e-75 286.2 289 51.2
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 3.0e-75 286.2 289 51.2
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.1e-74 284.3 374 43.6
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 3.3e-74 282.7 297 49.8
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 3.3e-74 282.7 274 54.0
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 4.3e-74 282.3 288 52.1
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 1.3e-73 280.8 306 48.4
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 2.1e-73 280.0 290 50.0
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.1e-72 277.7 300 49.7
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.1e-72 277.7 300 49.7
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.4e-72 277.3 301 49.2
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.4e-72 277.3 301 49.2
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 2.4e-72 276.6 300 50.7
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 6.9e-72 275.0 293 51.2
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 2.6e-71 273.1 294 51.0
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 2.1e-68 263.5 285 50.9
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 5.1e-67 258.8 307 47.9
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 2.5e-66 256.5 180 70.0
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 2.5e-66 256.5 208 63.0
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 2.8e-65 253.1 306 47.1
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 3.7e-65 252.7 191 65.4
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 6.3e-65 251.9 191 63.4
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 8.2e-65 251.5 288 49.0
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 5.3e-64 248.8 319 44.5
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 2.6e-63 246.5 235 54.9
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 2.2e-62 243.4 378 39.2
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 2.9e-62 243.0 302 44.0
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 1.4e-61 240.7 203 60.1
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 3.2e-61 239.6 246 49.2
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 2.7e-60 236.5 233 53.2
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 1.8e-59 233.8 266 49.6
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 2.3e-59 233.4 282 46.5
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 3.0e-59 233.0 218 55.5
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 5.7e-58 228.8 196 59.7
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 9.7e-58 228.0 279 45.2
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 3.7e-57 226.1 291 44.7
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.4e-56 224.2 221 50.2
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 2.9e-54 216.5 289 43.6
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 6.7e-51 205.3 236 47.0
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 6.3e-49 198.7 171 55.0
PGSC0003DMG400030871 Solanum tuberosum HOM05D005964 ORTHO05D007242 1.4e-43 181.0 177 53.1
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 2.0e-42 177.2 160 52.5
Ah.12g055850 Amaranthus hybridus HOM05D005964 ORTHO05D007242 6.5e-38 162.2 185 45.9
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 5.5e-37 159.1 140 57.1
Cpa.g.sc90.42 Carica papaya HOM05D005964 ORTHO05D007242 1.3e-30 137.9 83 71.1
HPP92_021116 Vanilla planifolia HOM05D005964 ORTHO05D007242 1.1e-29 134.8 186 39.2
Mapoly0153s0025 Marchantia polymorpha HOM05D005964 ORTHO05D007242 1.1e-24 118.2 261 33.0
Pp3c6_11480 Physcomitrium patens HOM05D005964 ORTHO05D007242 7.3e-21 105.5 262 30.5
AL8G21390 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 4.0e-19 99.8 134 41.8
Haze_05991 Corylus avellana HOM05D005964 ORTHO05D007242 6.8e-19 99.0 167 39.5
Haze_08067 Corylus avellana HOM05D005964 ORTHO05D007242 9.8e-18 95.1 111 45.9
AagrBONN_evm.TU.Sc2ySwM_344.1651 Anthoceros agrestis HOM05D005964 ORTHO05D007242 6.6e-14 82.4 173 31.8
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 2.5e-13 80.5 44 79.5
Cpa.g.c47778 Carica papaya HOM05D005964 ORTHO05D007242 6.8e-11 72.4 41 70.7
CBR_g24057 Chara braunii HOM05D005964 ORTHO05D007242 1.2e-10 71.6 105 35.2
Oeu042210.1 Olea europaea HOM05D005964 ORTHO05D007242 1.3e-09 68.2 50 58.0


User provided reference genes

Program Settings