Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G096525 Populus trichocarpa HOM05D003959 ORTHO05D001488 2.2e-57 225.3 108 100.0
Sabra10G0015600 Salix brachista HOM05D003959 ORTHO05D001488 2.9e-09 65.5 35 82.9
Potri.010G022800 Populus trichocarpa HOM05D003959 ORTHO05D001488 6.5e-09 64.3 35 80.0
Aqoxy5G00859 Aquilegia oxysepala HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Cpa.g.sc318.3 Carica papaya HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
CiPaw.02G098600 Carya illinoinensis HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Duzib160G0826 Durio zibethinus HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Glyma.08G310400 Glycine max HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Glyma.18G105500 Glycine max HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gohir.A05G147200 Gossypium hirsutum HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gohir.A10G042520 Gossypium hirsutum HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gohir.D05G149700 Gossypium hirsutum HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gohir.D10G043500 Gossypium hirsutum HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gorai.009G153800 Gossypium raimondii HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Gorai.011G046200 Gossypium raimondii HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Lalb_Chr02g0149491 Lupinus albus HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Lalb_Chr17g0348321 Lupinus albus HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Manes.06G164300 Manihot esculenta HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Manes.17G072900 Manihot esculenta HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
VMungo0540G0008 Vigna mungo HOM05D003959 ORTHO05D001488 2.5e-08 62.4 35 80.0
Atru.chr10.1163 Acer truncatum HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Atru.chr6.2792 Acer truncatum HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Actinidia11225 Actinidia chinensis HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 80.0
ATR1098G090 Amborella trichopoda HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
CANSAT78G0994 Cannabis sativa HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Cfa000921 Carpinus fangiana HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Cfa007957 Carpinus fangiana HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
CiPaw.01G168000 Carya illinoinensis HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Ca_02566_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
ClCG01G024770 Citrullus lanatus HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
ClCG09G005460 Citrullus lanatus HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
COL.COLO4_27612 Corchorus olitorius HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
COL.COLO4_31035 Corchorus olitorius HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Haze_05634 Corylus avellana HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
MELO3C007120.2 Cucumis melo HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
MELO3C008092.2 Cucumis melo HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
CsaV3_2G033220 Cucumis sativus L. HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
CsaV3_6G051890 Cucumis sativus L. HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Dinv21544 Davidia involucrata HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
Dinv44648 Davidia involucrata HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
Lj1g0018458 Lotus japonicus HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Lj6g0000074 Lotus japonicus HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
MBI02_g21427_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
MBI19_g14526_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
MBI19_g34081_MAGBIO Magnolia biondii HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
Nn8g40928 Nelumbo nucifera HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
PGR031G0007 Punica granatum HOM05D003959 ORTHO05D001488 3.2e-08 62.0 36 75.0
QL06p001969 Quercus lobata HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
THA.LOC104806134 Tarenaya hassleriana HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Thecc.02G307600 Theobroma cacao HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
Thecc.06G147200 Theobroma cacao HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
TAR460G0004 Trochodendron aralioides HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
TAR627G0457 Trochodendron aralioides HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
TAR627G1037 Trochodendron aralioides HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 82.9
GSVIVG01021529001 Vitis vinifera HOM05D003959 ORTHO05D001488 3.2e-08 62.0 35 77.1
CSS0003471 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
CSS0022821 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
CSS0027065 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
CSS0046336 Camellia sinensis var. sinensis HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Ca_14614_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 77.1
Ca_20413_v3 Cicer arietinum L. HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 77.1
HanXRQChr06g0183951 Helianthus annuus HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
HanXRQChr14g0428081 Helianthus annuus HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Lsat_1_v5_gn_8_26321 Lactuca sativa HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Lsat_1_v5_gn_8_55401 Lactuca sativa HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Lj7C343T5 Lonicera japonica HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Nitab4.5_0001251g0060 Nicotiana tabacum HOM05D000402 ORTHO05D001488 4.2e-08 61.6 35 80.0
Nitab4.5_0006013g0050 Nicotiana tabacum HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Oeu040095.1 Olea europaea HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Peaxi162Scf00194g00015 Petunia axillaris HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Peaxi162Scf00397g00428 Petunia axillaris HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Peaxi162Scf00875g00226 Petunia axillaris HOM05D003959 ORTHO05D001488 4.2e-08 61.6 35 80.0
Actinidia19714 Actinidia chinensis HOM05D000666 ORTHO05D001488 5.5e-08 61.2 35 77.1
arahy.Tifrunner.gnm1.ann1.9F1UYE Arachis hypogaea HOM05D003959 ORTHO05D001488 5.5e-08 61.2 35 77.1
arahy.Tifrunner.gnm1.ann1.Y6E9TB Arachis hypogaea HOM05D003959 ORTHO05D001488 5.5e-08 61.2 35 77.1
Hma1.2p1_0594F.1_g185820 Hydrangea macrophylla HOM05D003959 ORTHO05D001488 7.2e-08 60.8 35 80.0
Os12g0616200 Oryza sativa ssp. japonica HOM05D003959 ORTHO05D001488 7.2e-08 60.8 35 80.0
TWI36G1148 Tripterygium wilfordii HOM05D003959 ORTHO05D001488 7.2e-08 60.8 35 74.3
TWI75G0958 Tripterygium wilfordii HOM05D003959 ORTHO05D001488 7.2e-08 60.8 35 74.3
SGA_v2.0_scaffold1G00198 Striga asiatica HOM05D003959 ORTHO05D001488 9.4e-08 60.5 35 77.1
QL05p055692 Quercus lobata HOM05D003959 ORTHO05D001488 1.2e-07 60.1 35 74.3
CAN.G78.20 Capsicum annuum HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
SalBow8G3772 Salvia bowleyana HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
Sed0017497 Sechium edule HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 74.3
Solyc03g119380.3 Solanum lycopersicum HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
Sopen01g030960 Solanum pennellii HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
Sopen03g038250 Solanum pennellii HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
PGSC0003DMG400005217 Solanum tuberosum HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
PGSC0003DMG401005640 Solanum tuberosum HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
PGSC0003DMG403005640 Solanum tuberosum HOM05D003959 ORTHO05D001488 1.6e-07 59.7 35 77.1
AL8G12320 Arabidopsis lyrata HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
AT5G46160 Arabidopsis thaliana HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BcaB07g30850 Brassica carinata HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BcaC04g21721 Brassica carinata HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
A06p46130 Brassica napus HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
A09p22150 Brassica napus HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
C07p29360 Brassica napus HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
C09p28310 Brassica napus HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BolC7t43476H Brassica oleracea HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BolC9t55706H Brassica oleracea HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BraA06t27478Z Brassica rapa HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
BraA09t37819Z Brassica rapa HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
Carub.0008s0176 Capsella rubella HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
CARHR175640 Cardamine hirsuta HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
Ciclev10016904m.g Citrus clementina HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
Migut.M00890 Erythranthe guttata HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 77.1
Sp2g11020 Schrenkiella parvula HOM05D003959 ORTHO05D001488 2.1e-07 59.3 35 74.3
EL10Ac2g04579 Beta vulgaris HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 74.3
AUR62008996 Chenopodium quinoa HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 74.3
AUR62023305 Chenopodium quinoa HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 74.3
Peaxi162Scf00285g00076 Petunia axillaris HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 77.1
Peaxi162Scf68880g00001 Petunia axillaris HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 77.1
unitig_26.g9764 Utricularia gibba HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 74.3
vmacro20058 Vaccinium macrocarpon HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 74.3
Zm00001eb134780 Zea mays HOM05D003959 ORTHO05D001488 3.6e-07 58.5 35 77.1
MSTRG.16258 Avicennia marina HOM05D003959 ORTHO05D001488 4.7e-07 58.2 35 74.3
Cc03_g11360 Coffea canephora HOM05D003959 ORTHO05D001488 4.7e-07 58.2 35 74.3
SGA_v2.0_scaffold223G42820 Striga asiatica HOM05D003959 ORTHO05D001488 4.7e-07 58.2 35 74.3
Hund07898 Selenicereus undatus HOM05D003959 ORTHO05D001488 6.1e-07 57.8 35 74.3
Hund14612 Selenicereus undatus HOM05D003959 ORTHO05D001488 6.1e-07 57.8 35 74.3
SEGI_39130 Sequoiadendron giganteum HOM05D003959 ORTHO05D001488 6.1e-07 57.8 35 74.3
Sc23g0005280 Simmondsia chinensis HOM05D003959 ORTHO05D001488 6.1e-07 57.8 35 74.3
QL05p055594 Quercus lobata HOM05D003959 ORTHO05D001488 8.0e-07 57.4 35 71.4
BcaC04g21723 Brassica carinata HOM05D003959 ORTHO05D001488 1.0e-06 57.0 35 71.4
C09p28280 Brassica napus HOM05D003959 ORTHO05D001488 1.0e-06 57.0 35 71.4
Psat4g176520 Pisum sativum HOM05D003959 ORTHO05D001488 1.4e-06 56.6 34 73.5
Psat5g207880 Pisum sativum HOM05D003959 ORTHO05D001488 1.4e-06 56.6 34 73.5
C07p29340 Brassica napus HOM05D003959 ORTHO05D001488 1.8e-06 56.2 35 71.4
ECA238G0620 Erigeron canadensis HOM05D003959 ORTHO05D001488 2.3e-06 55.8 35 71.4
HPP92_006051 Vanilla planifolia HOM05D003959 ORTHO05D001488 2.3e-06 55.8 35 74.3
Aa31LG9G6750 Aethionema arabicum HOM05D003959 ORTHO05D001488 3.0e-06 55.5 35 71.4
Carub.0001s1733 Capsella rubella HOM05D003959 ORTHO05D001488 3.0e-06 55.5 35 71.4
FvH4_2g09650 Fragaria vesca HOM05D003959 ORTHO05D001488 3.0e-06 55.5 36 72.2
FAN15G1930 Fragaria x ananassa HOM05D000394 ORTHO05D000299 3.0e-06 55.5 36 72.2
FAN15G2904 Fragaria x ananassa HOM05D003959 ORTHO05D001488 3.0e-06 55.5 36 72.2
FAN24G0220 Fragaria x ananassa HOM05D003959 ORTHO05D001488 3.0e-06 55.5 36 72.2
Prupe.1G558000 Prunus persica HOM05D003959 ORTHO05D001488 3.0e-06 55.5 36 72.2
RcHm_v2.0_Chr1g0329391 Rosa chinensis HOM05D003959 ORTHO05D001488 3.0e-06 55.5 36 72.2
MD05G1061000 Malus domestica HOM05D003959 ORTHO05D001488 4.0e-06 55.1 36 72.2
MD10G1068800 Malus domestica HOM05D003959 ORTHO05D001488 4.0e-06 55.1 36 72.2
PSO170G0011 Papaver somniferum HOM05D003959 ORTHO05D001488 4.0e-06 55.1 35 71.4
Phvul.006G034600 Phaseolus vulgaris HOM05D003959 ORTHO05D001488 4.0e-06 55.1 34 70.6
Thhalv10001156m.g Eutrema salsugineum HOM05D003959 ORTHO05D001488 5.2e-06 54.7 35 68.6
Medtr5g007240 Medicago truncatula HOM05D003959 ORTHO05D001488 5.2e-06 54.7 34 70.6
Medtr5g096490 Medicago truncatula HOM05D003959 ORTHO05D001488 5.2e-06 54.7 34 70.6
Zm00001eb189880 Zea mays HOM05D003959 ORTHO05D001488 5.2e-06 54.7 35 74.3
Zm00001eb276960 Zea mays HOM05D003959 ORTHO05D001488 5.2e-06 54.7 35 74.3
Thhalv10008890m.g Eutrema salsugineum HOM05D003959 ORTHO05D001488 6.7e-06 54.3 35 65.7
CARHR018170 Cardamine hirsuta HOM05D003959 ORTHO05D001488 8.8e-06 53.9 35 68.6


User provided reference genes

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