Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 2.7e-180 635.2 316 100.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.1e-128 462.2 348 73.0
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.5e-127 458.4 378 66.4
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 8.6e-102 374.4 321 61.1
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 2.8e-92 342.8 320 54.4
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 2.8e-92 342.8 320 57.2
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.1e-91 340.9 303 58.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.3e-89 334.0 321 54.8
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.1e-88 330.9 315 53.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.9e-88 330.1 322 53.4
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 3.2e-88 329.3 306 55.6
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.1e-87 326.6 323 51.7
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 5.6e-85 318.5 300 54.0
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-83 312.4 314 51.3
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.4e-82 309.3 316 52.2
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.4e-82 308.9 321 52.0
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-82 307.8 304 51.0
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-82 307.8 304 51.0
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.3e-81 307.4 314 50.6
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-81 307.4 314 50.6
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 3.8e-81 305.8 296 53.4
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 6.4e-81 305.1 314 50.3
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.9e-80 303.5 316 51.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.2e-80 302.4 281 55.5
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.6e-79 300.4 298 53.4
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.5e-79 299.3 317 48.9
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.1e-77 294.3 291 51.5
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 4.8e-76 288.9 319 48.0
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 1.1e-75 287.7 284 50.7
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 2.0e-74 283.5 313 48.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 2.2e-73 280.0 283 51.2
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 6.4e-73 278.5 251 54.6
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.9e-72 276.9 319 46.1
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.2e-72 275.8 302 51.0
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 1.2e-71 274.2 313 47.0
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 3.5e-71 272.7 265 53.2
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 4.6e-71 272.3 264 51.9
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.0e-70 271.2 309 46.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.3e-70 270.8 309 46.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 2.3e-70 270.0 315 47.0
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.3e-70 270.0 315 47.0
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 6.7e-70 268.5 223 59.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 6.7e-70 268.5 283 50.2
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 8.7e-70 268.1 309 46.3
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 4.3e-69 265.8 312 45.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 9.6e-69 264.6 293 48.8
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.8e-68 263.1 341 44.0
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.1e-68 261.5 271 49.1
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.3e-65 254.2 286 47.9
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.7e-65 253.8 276 49.3
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 2.9e-65 253.1 261 49.0
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.8e-65 252.7 306 46.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 4.9e-65 252.3 250 48.8
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 6.5e-65 251.9 306 46.1
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 6.5e-65 251.9 302 43.7
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 6.5e-65 251.9 276 48.6
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 8.4e-65 251.5 306 46.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.1e-64 251.1 312 45.8
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.2e-64 249.6 316 42.7
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 4.2e-64 249.2 261 49.0
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 9.3e-64 248.1 261 48.7
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.6e-63 247.3 253 49.4
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.1e-63 246.9 294 46.3
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 2.1e-63 246.9 238 51.3
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 6.0e-63 245.4 261 49.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 6.0e-63 245.4 261 49.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 6.0e-63 245.4 261 49.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.0e-62 244.6 301 45.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.3e-62 244.2 309 41.4
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 3.0e-62 243.0 305 42.6
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 3.9e-62 242.7 300 47.3
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 6.7e-62 241.9 303 44.2
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.7e-62 241.5 259 47.9
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 5.7e-61 238.8 275 44.4
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 1.6e-60 237.3 267 48.3
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.8e-59 233.8 279 42.7
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.4e-59 233.4 292 45.2
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 5.3e-59 232.3 289 43.6
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.5e-58 230.7 266 46.6
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.0e-58 230.3 290 44.8
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 4.5e-58 229.2 263 46.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.5e-58 229.2 255 50.6
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 8.4e-57 224.9 247 47.0
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-57 224.9 291 44.3
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.4e-57 224.9 251 49.0
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-56 224.6 251 49.0
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-56 224.2 261 47.9
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.5e-56 223.4 250 46.8
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-56 222.6 251 48.6
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 5.5e-56 222.2 286 43.0
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.5e-56 222.2 251 48.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-56 221.9 299 43.1
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.1e-56 221.9 299 43.1
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-55 221.1 251 48.6
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-55 220.3 251 48.2
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.7e-55 219.9 250 46.4
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.1e-54 215.7 251 47.8
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.1e-53 214.5 190 56.8
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.9e-53 213.8 260 46.5
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.3e-52 211.1 271 45.8
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.4e-51 207.6 279 46.6
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 3.1e-51 206.5 295 43.4
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 3.1e-51 206.5 294 44.2
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 9.0e-51 204.9 275 43.3
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 9.0e-51 204.9 293 43.0
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 9.0e-51 204.9 295 43.4
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.5e-50 204.1 246 45.5
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 5.9e-50 202.2 303 40.6
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 5.9e-50 202.2 298 41.3
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 5.9e-50 202.2 305 42.0
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.3e-49 201.1 270 44.8
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 1.3e-49 201.1 280 45.7
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.9e-49 199.9 234 47.9
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 9.4e-48 194.9 306 39.9
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 9.4e-48 194.9 306 39.9
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.1e-47 193.7 282 41.8
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 2.7e-47 193.4 306 39.5
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.1e-47 192.2 215 52.6
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.8e-44 183.3 253 41.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.8e-44 182.6 247 41.7
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 5.3e-43 179.1 244 43.4
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 9.1e-43 178.3 263 41.1
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.0e-42 177.2 247 40.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.0e-41 172.6 155 57.4
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 8.5e-41 171.8 277 37.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 1.1e-40 171.4 219 42.9
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.5e-40 170.2 167 53.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.2e-40 169.9 187 49.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 7.2e-40 168.7 224 39.7
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-39 167.9 167 52.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.6e-39 166.4 247 40.5
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.9e-39 165.2 171 51.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-29 134.0 126 54.8
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-28 131.0 149 47.7
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 6.3e-28 129.0 141 47.5
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-25 120.6 139 47.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 6.1e-23 112.5 198 34.8
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 6.1e-23 112.5 215 37.7
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.3e-20 104.8 102 51.0
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 4.8e-20 102.8 212 31.6
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 3.2e-16 90.1 198 29.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.5e-13 81.3 89 42.7
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 4.5e-10 69.7 66 48.5
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-09 67.8 82 47.6
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 5.6e-08 62.8 152 30.9
SalBow6G0459 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-07 60.8 78 41.0


User provided reference genes

Program Settings