Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.2e-267 926.0 492 100.0
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.0e-214 749.2 490 81.8
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.0e-210 735.3 492 80.9
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 4.1e-199 698.4 491 79.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.8e-147 526.2 554 58.1
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.5e-137 493.8 550 54.2
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 5.6e-132 475.3 537 54.6
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.2e-131 474.2 528 56.4
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.8e-129 465.3 519 56.5
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.7e-128 463.8 558 52.3
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.2e-128 463.4 553 52.3
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.1e-127 461.1 519 56.1
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-127 461.1 519 56.1
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 3.2e-127 459.5 542 53.3
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 3.2e-127 459.5 559 51.9
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 2.5e-124 449.9 549 51.4
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.6e-123 447.2 532 54.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.2e-121 441.0 387 65.1
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-121 440.7 408 62.5
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.0e-121 440.3 558 52.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.4e-121 439.1 411 61.6
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 9.9e-121 438.0 543 52.1
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 1.3e-120 437.6 529 53.3
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.2e-120 436.8 573 48.7
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.1e-119 434.5 390 66.2
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 5.4e-119 432.2 397 62.5
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.2e-118 431.0 548 50.4
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.5e-118 429.5 531 51.4
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 4.6e-118 429.1 511 54.0
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 1.7e-117 427.2 411 60.6
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 5.1e-117 425.6 380 63.9
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 5.1e-117 425.6 532 51.7
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.1e-117 425.6 532 51.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.6e-117 425.2 532 51.5
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 6.6e-117 425.2 542 51.7
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 8.7e-117 424.9 526 50.8
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.7e-117 424.9 530 51.7
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 8.7e-117 424.9 389 64.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 1.1e-116 424.5 498 52.6
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 5.6e-116 422.2 532 51.5
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 5.6e-116 422.2 532 51.5
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 5.6e-116 422.2 532 50.6
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.3e-116 421.8 530 51.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 6.2e-115 418.7 527 52.6
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.8e-114 417.2 556 48.2
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 2.4e-114 416.8 527 52.8
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.1e-114 416.4 557 49.9
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 3.1e-114 416.4 535 50.7
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 4.0e-114 416.0 537 50.5
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 4.0e-114 416.0 557 48.1
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.9e-114 415.2 551 50.1
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 6.9e-114 415.2 536 49.8
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 1.2e-113 414.5 504 53.8
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 2.6e-113 413.3 551 47.7
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 7.6e-113 411.8 569 49.0
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 9.9e-113 411.4 519 52.0
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.3e-112 411.0 552 48.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.1e-111 407.9 379 61.7
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 1.1e-111 407.9 554 48.2
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 1.9e-111 407.1 514 51.6
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.2e-111 406.4 536 50.6
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.1e-111 405.2 419 59.4
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 9.3e-111 404.8 536 49.8
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 3.5e-110 402.9 553 48.8
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 7.8e-110 401.7 391 60.1
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.0e-109 401.4 584 46.9
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 1.7e-109 400.6 492 52.8
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 5.1e-109 399.1 514 50.2
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.3e-107 394.4 381 59.6
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 3.6e-107 392.9 532 49.1
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 8.1e-107 391.7 500 51.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 4.0e-106 389.4 538 48.7
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 4.0e-106 389.4 523 49.3
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 3.4e-105 386.3 422 57.3
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.7e-104 384.0 572 46.5
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 2.2e-104 383.6 540 48.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 6.4e-104 382.1 532 47.6
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 8.4e-104 381.7 486 51.2
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 8.4e-104 381.7 486 51.2
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 8.4e-104 381.7 535 47.7
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.4e-103 380.9 567 46.2
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 1.9e-103 380.6 486 51.0
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.9e-103 380.6 582 46.2
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.4e-103 380.2 522 47.5
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 3.2e-103 379.8 531 48.6
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 4.2e-103 379.4 566 47.2
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 4.2e-103 379.4 469 54.4
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 5.4e-103 379.0 486 50.6
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 7.1e-103 378.6 527 46.5
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 7.1e-103 378.6 542 47.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 7.1e-103 378.6 447 53.9
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.2e-102 377.9 526 48.9
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.1e-102 377.1 486 50.8
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 2.7e-102 376.7 508 50.4
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 1.3e-101 374.4 538 45.4
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 3.9e-101 372.9 523 49.1
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.9e-100 370.5 541 47.0
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 9.6e-100 368.2 533 47.7
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 3.4e-97 359.8 393 55.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 7.1e-95 352.1 391 54.5
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.5e-94 349.7 506 47.4
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.6e-94 349.4 376 55.3
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 1.5e-92 344.4 431 51.3
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.5e-92 344.4 359 56.0
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.7e-91 339.7 475 46.7
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.1e-90 336.7 408 52.2
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.2e-89 334.7 467 47.3
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 2.0e-89 334.0 464 47.8
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 6.7e-85 318.9 335 55.5
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.9e-84 317.4 401 50.1
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.2e-81 308.1 227 70.9
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 8.5e-56 222.2 143 77.6
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.8e-51 207.2 134 77.6
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 1.8e-50 204.5 360 37.8
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 3.0e-45 187.2 303 42.2
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.8e-43 180.6 408 34.8
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 3.7e-43 180.3 332 38.9
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.8e-42 177.9 338 40.2
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 2.4e-42 177.6 305 41.3
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 8.6e-40 169.1 192 50.5
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.6e-38 163.7 110 76.4
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.9e-33 146.4 321 35.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.3e-29 134.4 103 62.1
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.3e-29 134.4 103 62.1
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 3.1e-29 134.0 206 42.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 8.9e-29 132.5 197 43.1
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 1.3e-27 128.6 207 42.5
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 6.4e-27 126.3 206 41.7
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.1e-26 125.6 119 58.8
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 5.4e-26 123.2 361 33.0
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.4e-20 104.0 135 48.1
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 3.0e-16 90.9 172 45.3
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.1e-15 89.0 65 69.2
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.9e-15 88.2 185 41.1
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 3.5e-09 67.4 120 37.5
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 1.7e-08 65.1 210 27.1
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 2.3e-08 64.7 204 26.5
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 1.9e-07 61.6 378 28.3
Oeu037891.1 Olea europaea HOM05D000428 ORTHO05D005608 2.5e-07 61.2 220 24.5
Migut.L00293 Erythranthe guttata HOM05D000428 ORTHO05D005608 7.3e-07 59.7 269 24.2
AagrBONN_evm.TU.Sc2ySwM_369.318 Anthoceros agrestis HOM05D004650 ORTHO05D005715 9.6e-07 59.3 229 30.6
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 9.6e-07 59.3 189 24.9
PSO541G5970 Papaver somniferum HOM05D000428 ORTHO05D005608 1.6e-06 58.5 220 24.1
AL3G51840 Arabidopsis lyrata HOM05D000428 ORTHO05D005608 2.1e-06 58.2 210 24.3
EL10Ac6g14921 Beta vulgaris HOM05D000428 ORTHO05D005608 2.1e-06 58.2 220 24.1
Peaxi162Scf00759g00212 Petunia axillaris HOM05D000428 ORTHO05D005608 2.1e-06 58.2 220 24.5
Hund14143 Selenicereus undatus HOM05D000428 ORTHO05D005608 2.1e-06 58.2 220 24.1
Carub.0003s3271 Capsella rubella HOM05D000428 ORTHO05D005608 2.8e-06 57.8 210 23.8
PSO675G4237 Papaver somniferum HOM05D000428 ORTHO05D005608 2.8e-06 57.8 220 24.1
BcaB07g31661 Brassica carinata HOM05D000428 ORTHO05D005608 3.6e-06 57.4 213 24.4
AUR62003178 Chenopodium quinoa HOM05D000428 ORTHO05D005608 3.6e-06 57.4 220 24.1
MBI16_g35646_MAGBIO Magnolia biondii HOM05D000428 ORTHO05D005608 3.6e-06 57.4 220 24.1
Sp5g26790 Schrenkiella parvula HOM05D000428 ORTHO05D000582 3.6e-06 57.4 201 25.4
SpUn0095_0020 Schrenkiella parvula HOM05D000428 ORTHO05D000582 3.6e-06 57.4 201 25.4
CiPaw.02G015800 Carya illinoinensis HOM05D000428 ORTHO05D005608 4.7e-06 57.0 220 24.1
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 4.7e-06 57.0 206 29.6
ECA246G0987 Erigeron canadensis HOM05D000428 ORTHO05D005608 4.7e-06 57.0 220 24.1
Gohir.D10G093100 Gossypium hirsutum HOM05D000428 ORTHO05D005608 4.7e-06 57.0 220 23.6
Gorai.011G102300 Gossypium raimondii HOM05D000428 ORTHO05D005608 4.7e-06 57.0 220 23.6
HanXRQChr05g0157731 Helianthus annuus HOM05D000428 ORTHO05D005608 4.7e-06 57.0 220 24.1
Nitab4.5_0001456g0190 Nicotiana tabacum HOM05D000428 ORTHO05D005608 4.7e-06 57.0 241 24.1
Prupe.2G134600 Prunus persica HOM05D000428 ORTHO05D005608 4.7e-06 57.0 238 23.9
Actinidia35650 Actinidia chinensis HOM05D000428 ORTHO05D005608 6.2e-06 56.6 220 24.1
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 6.2e-06 56.6 90 35.6
Duzib264G0582 Durio zibethinus HOM05D000428 ORTHO05D005608 6.2e-06 56.6 220 23.6
Lsat_1_v5_gn_5_24320 Lactuca sativa HOM05D000428 ORTHO05D005608 6.2e-06 56.6 220 24.1
AT5G50250 Arabidopsis thaliana HOM05D000142 ORTHO05D001253 8.1e-06 56.2 188 25.5
ClCG05G007140 Citrullus lanatus HOM05D000428 ORTHO05D005608 8.1e-06 56.2 220 24.1
CsaV3_3G015880 Cucumis sativus L. HOM05D000428 ORTHO05D005608 8.1e-06 56.2 220 24.1
FAN10G3598 Fragaria x ananassa HOM05D000428 ORTHO05D005608 8.1e-06 56.2 238 23.9
Gohir.A10G094825 Gossypium hirsutum HOM05D000428 ORTHO05D005608 8.1e-06 56.2 210 23.3
PGSC0003DMG400008934 Solanum tuberosum HOM05D000428 ORTHO05D005608 8.1e-06 56.2 241 23.2
GSVIVG01018991001 Vitis vinifera HOM05D000428 ORTHO05D005608 8.1e-06 56.2 220 24.5


User provided reference genes

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