Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 1.8e-111 406.0 208 100.0
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 2.5e-73 279.3 210 73.8
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 8.8e-71 270.8 204 71.1
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 2.2e-69 266.2 207 71.0
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 4.8e-69 265.0 199 72.9
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 6.3e-69 264.6 201 70.6
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 6.3e-69 264.6 203 70.9
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 6.3e-69 264.6 208 68.3
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 8.3e-69 264.2 203 71.4
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 8.3e-69 264.2 200 70.0
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 1.4e-68 263.5 207 70.5
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 4.1e-68 261.9 205 69.8
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.4e-68 261.5 207 69.6
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 5.4e-68 261.5 207 69.6
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.6e-67 260.0 207 69.1
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 2.0e-67 259.6 205 68.8
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 3.5e-67 258.8 191 70.7
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 5.9e-67 258.1 207 68.1
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 7.7e-67 257.7 206 68.9
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 2.9e-66 255.8 209 67.5
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 2.9e-66 255.8 203 69.0
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 6.6e-66 254.6 206 67.5
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.1e-65 253.8 200 68.0
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.1e-65 253.8 199 69.3
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 1.5e-65 253.4 207 69.1
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.9e-65 253.1 199 68.8
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 3.3e-65 252.3 202 70.3
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 3.3e-65 252.3 201 68.2
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 4.2e-65 251.9 199 68.3
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 4.2e-65 251.9 201 69.2
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 7.2e-65 251.1 202 67.8
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 1.2e-64 250.4 200 67.0
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.2e-64 250.4 200 67.0
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.6e-64 250.0 200 66.5
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.6e-64 250.0 203 66.5
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 1.6e-64 250.0 215 65.6
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 2.8e-64 249.2 201 65.2
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.6e-64 248.8 198 66.7
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 4.7e-64 248.4 210 65.2
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 4.7e-64 248.4 205 65.9
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 6.1e-64 248.1 207 65.2
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 1.0e-63 247.3 198 68.7
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.4e-63 246.9 211 65.4
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 1.4e-63 246.9 207 66.2
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 1.4e-63 246.9 199 66.8
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 1.4e-63 246.9 209 65.6
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 1.8e-63 246.5 205 67.3
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 2.3e-63 246.1 207 64.7
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 2.3e-63 246.1 212 64.6
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 3.0e-63 245.7 208 64.4
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 4.0e-63 245.4 210 64.8
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 5.2e-63 245.0 210 64.8
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 5.2e-63 245.0 210 64.8
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 6.8e-63 244.6 202 65.8
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 8.9e-63 244.2 199 67.8
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 8.9e-63 244.2 220 63.2
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 8.9e-63 244.2 208 64.4
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 8.9e-63 244.2 206 67.0
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.2e-62 243.8 199 68.8
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 1.2e-62 243.8 207 64.3
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.2e-62 243.8 203 66.0
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.2e-62 243.8 192 69.3
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 1.2e-62 243.8 200 67.0
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 1.2e-62 243.8 206 65.5
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 1.5e-62 243.4 203 65.0
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.5e-62 243.4 209 65.1
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.0e-62 243.0 214 63.1
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 2.0e-62 243.0 204 64.2
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 2.6e-62 242.7 242 58.3
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 3.4e-62 242.3 212 63.2
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 3.4e-62 242.3 212 63.2
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 5.7e-62 241.5 195 66.7
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 5.7e-62 241.5 202 66.3
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 7.5e-62 241.1 207 64.7
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 9.8e-62 240.7 214 63.1
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 1.7e-61 240.0 211 64.0
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 2.2e-61 239.6 204 65.7
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 2.2e-61 239.6 217 63.6
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 2.8e-61 239.2 200 65.0
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 3.7e-61 238.8 210 64.3
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 1.4e-60 236.9 209 63.2
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 1.4e-60 236.9 206 62.6
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 1.8e-60 236.5 203 64.0
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 3.1e-60 235.7 198 65.2
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 4.1e-60 235.3 207 62.8
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 4.1e-60 235.3 207 64.3
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 9.2e-60 234.2 200 64.0
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 9.2e-60 234.2 207 62.8
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.6e-59 233.4 201 60.2
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.0e-59 233.0 203 66.0
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 7.8e-59 231.1 203 65.0
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 1.0e-58 230.7 206 62.6
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 5.0e-58 228.4 199 63.3
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 3.1e-55 219.2 203 60.6
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 5.2e-55 218.4 161 72.0
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 9.8e-54 214.2 159 70.4
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 9.8e-54 214.2 159 70.4
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 9.8e-54 214.2 204 56.4
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 9.8e-54 214.2 201 57.2
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 2.2e-53 213.0 216 58.3
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 4.9e-53 211.8 170 68.2
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 8.3e-53 211.1 169 63.3
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 9.2e-52 207.6 141 80.1
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 5.6e-49 198.4 187 58.8
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 1.2e-48 197.2 366 38.3
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 3.7e-45 185.7 158 61.4
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 5.1e-42 175.3 158 57.6
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 1.5e-41 173.7 183 53.0
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.8e-39 166.8 123 74.8
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 2.6e-38 162.9 117 72.6
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 6.4e-37 158.3 129 65.9
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 7.1e-36 154.8 129 65.1
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 4.6e-35 152.1 115 69.6
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 1.3e-34 150.6 181 44.2
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 1.7e-34 150.2 203 42.4
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 2.5e-33 146.4 122 63.9
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 6.8e-31 138.3 128 59.4
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 9.2e-28 127.9 120 55.0
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 1.9e-25 120.2 113 57.5
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 1.4e-23 114.0 203 35.5
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 4.4e-22 109.0 161 40.4
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 7.6e-22 108.2 71 76.1
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.6e-19 100.5 74 73.0
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 2.3e-18 96.7 132 45.5
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 1.5e-17 94.0 75 69.3
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 2.5e-17 93.2 77 66.2
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 1.8e-15 87.0 185 31.4
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 2.6e-14 83.2 81 54.3
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 3.8e-13 79.3 55 70.9
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 4.9e-13 79.0 48 81.2
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 1.6e-11 73.9 46 82.6


User provided reference genes

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