Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 6.0e-253 877.1 462 100.0
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.1e-209 731.9 412 93.0
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.7e-178 629.8 463 70.6
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 2.2e-170 602.8 460 70.2
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 1.9e-166 589.7 472 66.7
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 1.6e-165 586.6 461 65.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.0e-164 582.4 477 66.0
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.7e-162 576.6 461 65.5
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 4.6e-160 568.5 461 64.9
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 7.8e-160 567.8 462 65.2
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.0e-159 567.4 463 63.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 3.0e-159 565.8 458 65.5
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 3.0e-159 565.8 466 64.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 3.6e-157 558.9 453 65.8
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.6e-157 558.9 463 64.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 6.2e-157 558.1 461 65.1
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 1.0e-156 557.4 465 63.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 2.3e-156 556.2 465 63.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 2.3e-156 556.2 464 63.8
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.9e-154 548.5 467 62.3
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 8.3e-154 547.7 456 62.9
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.1e-153 545.4 467 62.5
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.5e-152 542.3 465 62.6
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.5e-150 537.0 447 63.5
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 7.3e-150 534.6 460 59.8
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 8.1e-149 531.2 465 61.3
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.1e-148 530.8 460 59.6
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.3e-148 529.6 466 60.3
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.1e-148 529.3 458 60.0
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 5.2e-148 528.5 463 62.4
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 8.9e-148 527.7 460 59.1
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.6e-147 526.2 466 59.9
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.5e-147 524.6 435 65.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 9.8e-147 524.2 467 59.1
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 4.9e-146 521.9 460 60.9
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 4.9e-146 521.9 460 60.9
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 3.2e-145 519.2 467 60.2
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 5.4e-145 518.5 460 60.7
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 7.1e-145 518.1 466 59.0
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.2e-145 517.7 461 60.1
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.2e-144 517.3 467 59.5
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.2e-144 517.3 467 59.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.2e-144 517.3 461 59.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 1.0e-143 514.2 469 59.3
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 2.3e-143 513.1 467 58.5
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 3.0e-143 512.7 465 59.6
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 3.9e-143 512.3 466 59.2
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 3.9e-143 512.3 470 59.1
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.1e-143 511.9 464 59.5
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 6.6e-143 511.5 464 59.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.1e-142 510.8 467 58.5
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.9e-142 510.0 473 59.4
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.9e-142 510.0 473 59.4
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.5e-142 509.6 462 58.7
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.3e-142 509.2 467 58.7
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 5.6e-142 508.4 462 58.7
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.4e-140 503.8 462 57.6
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.8e-140 503.4 471 57.3
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.2e-140 501.9 461 59.7
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 3.4e-139 499.2 426 64.1
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.4e-137 493.0 469 58.8
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.8e-136 488.0 690 43.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.7e-135 486.9 463 59.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 5.1e-135 485.3 463 55.9
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 4.0e-132 475.7 463 55.3
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.2e-131 474.2 436 59.4
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-131 473.4 463 56.4
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.6e-131 473.0 368 66.0
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.4e-131 472.6 463 56.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.4e-131 472.6 383 64.5
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 4.4e-131 472.2 385 64.4
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 4.2e-129 465.7 464 57.5
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 4.6e-128 462.2 464 56.7
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 6.6e-127 458.4 391 60.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.4e-124 449.9 546 47.6
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.8e-122 442.6 418 58.1
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.1e-121 438.3 501 51.7
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 6.0e-120 435.3 438 55.5
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.3e-118 429.5 528 49.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 4.8e-117 425.6 412 57.5
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.1e-116 422.9 463 52.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.0e-115 420.2 380 58.9
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 4.5e-115 419.1 393 55.2
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 9.3e-113 411.4 362 59.9
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 7.9e-112 408.3 439 53.5
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.1e-110 404.4 322 65.2
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 7.4e-110 401.7 291 68.4
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.2e-107 394.4 470 49.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 2.6e-107 393.3 504 49.4
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 1.7e-106 390.6 408 56.4
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.1e-104 383.6 467 48.6
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 6.7e-103 378.6 491 45.6
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.1e-102 377.9 350 59.1
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.3e-101 374.4 291 67.0
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 2.8e-101 373.2 357 57.1
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 3.7e-101 372.9 478 45.6
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.5e-99 367.5 347 55.9
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.0e-98 364.8 373 55.5
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.2e-96 357.8 285 64.6
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 2.5e-94 350.1 419 49.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 9.7e-94 348.2 482 45.6
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-93 347.8 310 60.3
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.6e-88 330.9 262 64.9
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 3.0e-87 326.6 254 66.1
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 5.9e-83 312.4 473 43.3
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.4e-81 307.8 295 55.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.7e-78 295.8 229 64.6
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 9.1e-76 288.5 377 46.4
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 2.9e-74 283.5 260 60.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 1.6e-72 277.7 514 38.5
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.6e-72 277.7 445 38.9
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-69 267.3 299 51.5
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-68 265.0 312 51.9
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 5.9e-67 259.2 169 73.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 2.4e-60 237.3 296 46.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.8e-48 197.2 205 57.1
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 8.0e-48 195.7 159 65.4
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.9e-45 187.2 476 33.8
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.5e-41 174.9 545 30.8
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-40 171.4 170 54.7
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.6e-38 164.1 560 31.6
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.0e-35 154.5 106 69.8
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-34 151.0 143 58.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.6e-32 144.8 381 33.1
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-28 132.1 167 46.7
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.6e-25 119.8 145 47.6
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 8.9e-23 112.5 127 51.2
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 7.6e-22 109.4 123 53.7
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 3.2e-20 104.0 146 47.3
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.6e-19 101.7 63 79.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.9e-18 97.1 83 61.4
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.6e-18 96.3 75 62.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 6.6e-18 96.3 75 62.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-17 95.1 75 61.3
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 2.5e-17 94.4 116 49.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.6e-17 93.2 75 62.7
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 6.9e-15 86.3 125 40.0
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 4.9e-13 80.1 54 72.2
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 3.2e-12 77.4 87 55.2
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.6e-09 66.6 46 67.4
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 9.6e-09 65.9 47 63.8
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.3e-08 65.5 83 44.6
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 8.1e-08 62.8 44 65.9
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 9.0e-07 59.3 52 59.6


User provided reference genes

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