Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.6e-61 236.9 112 100.0
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 1.2e-42 176.4 112 75.9
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 3.2e-27 125.2 111 58.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 4.7e-26 121.3 103 61.2
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.7e-23 112.8 114 55.3
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.7e-23 111.7 107 57.9
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 8.2e-23 110.5 108 53.7
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.8e-22 109.4 108 55.6
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 3.1e-22 108.6 107 56.1
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.6e-21 105.5 116 51.7
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 7.7e-21 104.0 110 50.9
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.3e-20 103.2 114 54.4
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 3.8e-20 101.7 116 50.9
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 5.0e-20 101.3 115 47.8
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 9.4e-19 97.1 118 47.5
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 8.0e-18 94.0 108 49.1
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 8.0e-18 94.0 116 44.0
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 1.4e-17 93.2 110 48.2
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 1.4e-17 93.2 108 49.1
Sabra01G0110900 Salix brachista HOM05D006292 ORTHO05D006110 6.7e-17 90.9 60 66.7
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 8.8e-17 90.5 115 46.1
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 1.2e-16 90.1 116 44.8
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.2e-16 90.1 106 44.3
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.5e-16 89.7 115 46.1
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 5.7e-16 87.8 104 48.1
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 5.7e-16 87.8 115 46.1
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 9.7e-16 87.0 109 41.3
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.3e-15 86.7 109 48.6
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.7e-15 86.3 107 46.7
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.7e-15 86.3 107 46.7
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 1.7e-15 86.3 116 46.6
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.3e-15 84.3 106 47.2
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.2e-15 84.0 120 42.5
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.8e-14 82.8 104 47.1
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 1.8e-14 82.8 110 45.5
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 2.4e-14 82.4 107 48.6
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 2.4e-14 82.4 104 46.2
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 3.1e-14 82.0 105 44.8
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 5.3e-14 81.3 108 47.2
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 7.0e-14 80.9 105 43.8
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 7.0e-14 80.9 105 43.8
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 7.0e-14 80.9 113 44.2
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 7.0e-14 80.9 109 41.3
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 9.1e-14 80.5 111 44.1
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 1.6e-13 79.7 124 42.7
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.6e-13 79.7 105 43.8
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 2.7e-13 79.0 105 44.8
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.5e-13 78.6 120 39.2
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 3.5e-13 78.6 105 48.6
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 4.5e-13 78.2 105 43.8
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.9e-13 77.8 105 46.7
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 5.9e-13 77.8 108 40.7
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 5.9e-13 77.8 109 42.2
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 1.0e-12 77.0 105 44.8
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 1.0e-12 77.0 105 44.8
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.0e-12 77.0 104 47.1
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 1.7e-12 76.3 104 43.3
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.2e-12 75.9 104 46.2
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 2.9e-12 75.5 94 42.6
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 3.8e-12 75.1 105 42.9
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 3.8e-12 75.1 111 45.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 3.8e-12 75.1 110 45.5
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 5.0e-12 74.7 120 39.2
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 8.5e-12 73.9 121 35.5
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 1.1e-11 73.6 107 42.1
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 1.5e-11 73.2 107 44.9
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.5e-11 73.2 98 44.9
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.5e-11 73.2 105 44.8
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 1.9e-11 72.8 105 41.0
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-11 72.8 76 50.0
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-11 72.8 76 50.0
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.9e-11 72.8 76 50.0
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 3.2e-11 72.0 120 42.5
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 3.2e-11 72.0 105 38.1
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 3.2e-11 72.0 114 43.0
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.2e-11 72.0 124 39.5
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 4.2e-11 71.6 121 38.8
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 4.2e-11 71.6 109 44.0
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 5.5e-11 71.2 105 39.0
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 5.5e-11 71.2 105 39.0
Cfa012441 Carpinus fangiana HOM05D006292 ORTHO05D006110 5.5e-11 71.2 106 40.6
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 5.5e-11 71.2 111 43.2
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 7.2e-11 70.9 105 39.0
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 7.2e-11 70.9 105 39.0
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 7.2e-11 70.9 105 39.0
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 7.2e-11 70.9 110 42.7
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 9.4e-11 70.5 120 36.7
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 9.4e-11 70.5 103 38.8
SGA_v2.0_scaffold198G41102 Striga asiatica HOM05D006292 ORTHO05D006110 9.4e-11 70.5 120 40.8
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 9.4e-11 70.5 104 45.2
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 1.2e-10 70.1 105 44.8
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.2e-10 70.1 110 42.7
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 1.6e-10 69.7 123 39.0
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 1.6e-10 69.7 123 39.0
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 1.6e-10 69.7 113 41.6
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 1.6e-10 69.7 107 42.1
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 1.6e-10 69.7 105 41.0
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.6e-10 69.7 124 40.3
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 3.6e-10 68.6 105 38.1
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 3.6e-10 68.6 122 41.0
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 3.6e-10 68.6 122 41.0
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 3.6e-10 68.6 122 41.0
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 4.7e-10 68.2 112 43.8
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 6.1e-10 67.8 103 38.8
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 6.1e-10 67.8 105 45.7
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 8.0e-10 67.4 105 42.9
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 8.0e-10 67.4 105 47.6
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.0e-10 67.4 110 41.8
Nn6g33587 Nelumbo nucifera HOM05D006292 ORTHO05D006110 8.0e-10 67.4 79 45.6
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.4e-09 66.6 108 43.5
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 1.8e-09 66.2 115 39.1
MSTRG.12158 Avicennia marina HOM05D006292 ORTHO05D006110 3.0e-09 65.5 116 38.8
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 3.0e-09 65.5 113 38.9
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 5.2e-09 64.7 106 38.7
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.8e-09 64.3 108 41.7
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 6.8e-09 64.3 113 38.9
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 8.8e-09 63.9 114 40.4
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 8.8e-09 63.9 114 40.4
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.2e-08 63.5 108 41.7
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.2e-08 63.5 108 41.7
HPP92_025449 Vanilla planifolia HOM05D006292 ORTHO05D006110 1.2e-08 63.5 116 35.3
Gohir.A08G156500 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.5e-08 63.2 111 40.5
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 2.0e-08 62.8 119 38.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 2.6e-08 62.4 105 37.1
Gohir.A03G000800 Gossypium hirsutum HOM05D006292 ORTHO05D006110 4.4e-08 61.6 112 36.6
Gohir.D03G171400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 7.5e-08 60.8 112 36.6
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 9.8e-08 60.5 112 42.0
Rhsim11G0014800 Rhododendron simsii HOM05D006292 ORTHO05D006110 9.8e-08 60.5 112 38.4
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 1.3e-07 60.1 116 37.1
Gohir.D08G177000 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.3e-07 60.1 111 38.7
Gorai.003G182000 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.3e-07 60.1 112 35.7
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 1.7e-07 59.7 120 39.2
Gorai.004G184900 Gossypium raimondii HOM05D006292 ORTHO05D006110 2.2e-07 59.3 111 38.7
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 3.7e-07 58.5 119 35.3
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 4.8e-07 58.2 105 40.0
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 6.3e-07 57.8 109 37.6
SalBow6G3663 Salvia bowleyana HOM05D006292 ORTHO05D006110 3.1e-06 55.5 74 44.6
SGA_v2.0_scaffold6G03157 Striga asiatica HOM05D006292 ORTHO05D006110 4.1e-06 55.1 120 41.7
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 5.4e-06 54.7 106 38.7
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 5.4e-06 54.7 106 38.7


User provided reference genes

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