Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.5e-84 316.2 165 100.0
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 6.1e-75 284.3 165 84.2
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 4.4e-65 251.5 244 61.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 4.0e-58 228.4 267 50.9
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 4.6e-54 214.9 167 70.7
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.3e-53 213.4 165 64.2
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.0e-53 211.5 171 68.4
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 6.6e-53 211.1 168 68.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 8.6e-53 210.7 163 69.3
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 2.5e-52 209.1 165 65.5
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 3.6e-51 205.3 166 63.9
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 3.6e-51 205.3 165 63.0
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 6.2e-51 204.5 166 63.9
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.1e-50 203.8 166 63.9
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.4e-50 203.4 165 62.4
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.3e-50 202.6 165 62.4
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.0e-49 199.5 165 60.6
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 5.8e-49 198.0 202 55.0
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.7e-48 196.4 165 60.0
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.4e-47 193.4 165 59.4
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 4.1e-47 191.8 163 62.6
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 2.1e-46 189.5 165 58.8
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.1e-46 189.5 165 59.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.7e-46 189.1 167 59.3
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.7e-46 189.1 167 59.3
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.6e-46 188.3 167 56.3
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 4.6e-46 188.3 165 64.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 6.0e-46 188.0 166 62.0
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 6.0e-46 188.0 165 57.0
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 1.3e-45 186.8 169 64.5
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 6.6e-45 184.5 165 62.4
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.1e-44 183.7 164 59.8
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.5e-44 183.3 167 61.7
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.3e-44 182.2 165 56.4
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.6e-44 181.4 165 60.0
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 7.3e-44 181.0 165 59.4
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 7.3e-44 181.0 165 53.9
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 9.5e-44 180.6 159 56.6
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.2e-43 180.3 165 58.8
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.8e-43 179.1 165 59.4
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 3.6e-43 178.7 165 53.9
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 4.7e-43 178.3 165 60.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 8.1e-43 177.6 165 55.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.4e-42 176.8 165 54.5
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.4e-42 176.8 165 55.8
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.1e-42 175.6 165 53.9
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.1e-42 175.6 167 56.9
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 3.1e-42 175.6 166 54.2
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.2e-41 173.7 165 51.5
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.5e-41 173.3 165 56.4
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 3.4e-41 172.2 165 51.5
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.4e-41 172.2 168 52.4
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 5.8e-41 171.4 165 58.8
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 7.6e-41 171.0 165 53.9
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 7.6e-41 171.0 165 53.3
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 9.9e-41 170.6 173 53.2
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.9e-40 169.1 165 51.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.8e-40 168.7 165 52.7
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 3.8e-40 168.7 165 53.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 4.9e-40 168.3 165 55.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.9e-40 168.3 165 57.0
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 8.4e-40 167.5 165 52.7
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.9e-39 166.4 168 57.7
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.4e-39 166.0 162 53.1
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.4e-39 166.0 165 51.5
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 9.2e-39 164.1 168 51.8
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 1.2e-38 163.7 166 50.6
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-38 163.3 165 57.0
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.6e-38 163.3 165 57.0
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.7e-38 162.5 165 52.7
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 3.5e-38 162.2 166 51.2
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 4.6e-38 161.8 163 52.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.0e-37 160.6 224 45.1
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 1.3e-37 160.2 161 51.6
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 1.3e-37 160.2 166 54.8
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.3e-37 159.5 161 52.2
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.3e-37 159.5 165 49.7
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 3.9e-37 158.7 166 58.4
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 3.9e-37 158.7 161 51.6
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 3.9e-37 158.7 165 51.5
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 6.6e-37 157.9 166 55.4
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-36 157.1 161 50.9
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 1.5e-36 156.8 167 50.3
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.3e-36 155.2 164 50.6
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 4.3e-36 155.2 161 50.3
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 5.6e-36 154.8 168 57.7
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 9.6e-36 154.1 176 50.6
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.2e-35 153.7 121 61.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 1.6e-35 153.3 160 51.2
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 2.1e-35 152.9 161 49.7
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 4.7e-35 151.8 165 49.7
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.1e-34 150.6 165 57.0
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.8e-34 149.8 227 44.5
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 2.4e-34 149.4 165 47.9
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.4e-34 149.4 162 50.0
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 4.0e-34 148.7 166 48.8
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 5.2e-34 148.3 165 49.7
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.2e-33 147.1 162 47.5
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 1.5e-33 146.7 151 57.6
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.5e-33 146.7 202 42.6
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.0e-33 146.4 163 46.0
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.6e-33 146.0 192 43.8
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 4.9e-32 141.7 193 42.5
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 8.4e-32 141.0 169 48.5
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.1e-31 140.6 168 54.8
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 4.2e-31 138.7 167 45.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 2.7e-30 136.0 170 49.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 6.0e-30 134.8 162 48.1
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 7.8e-30 134.4 161 44.7
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 5.1e-29 131.7 165 43.0
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 2.5e-28 129.4 172 47.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-28 129.4 165 43.0
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 2.5e-28 129.4 165 43.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 3.3e-28 129.0 153 47.1
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 4.3e-28 128.6 157 46.5
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.1e-27 126.3 111 55.9
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.1e-27 126.3 164 44.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 2.8e-27 125.9 156 46.2
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.6e-27 125.6 81 71.6
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 4.8e-27 125.2 152 46.7
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 6.2e-27 124.8 156 44.9
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 8.1e-27 124.4 160 45.6
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 3.1e-26 122.5 160 42.5
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 4.0e-26 122.1 152 44.7
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 4.0e-26 122.1 152 44.7
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 6.9e-26 121.3 159 44.7
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 9.0e-26 120.9 155 43.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 9.0e-26 120.9 155 43.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 9.0e-26 120.9 152 44.7
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.2e-25 120.6 157 43.9
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 2.0e-25 119.8 152 45.4
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 2.0e-25 119.8 159 44.7
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.6e-25 119.4 162 44.4
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 3.4e-25 119.0 113 53.1
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 2.9e-24 115.9 152 45.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 8.4e-24 114.4 79 67.1
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 3.2e-23 112.5 171 38.0
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 5.4e-23 111.7 81 64.2
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 7.1e-23 111.3 159 50.3
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 7.1e-23 111.3 183 37.2
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 1.3e-21 107.1 166 39.8
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.1e-20 104.0 105 51.4
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 1.1e-20 104.0 163 38.7
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 2.5e-20 102.8 73 67.1
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 2.1e-19 99.8 163 38.7
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.8e-18 96.7 88 56.8
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.7e-16 90.1 86 57.0
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.9e-16 88.6 79 55.7
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 1.6e-14 83.6 44 86.4
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 1.6e-14 83.6 81 48.1
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.1e-13 78.6 76 50.0
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 1.1e-12 77.4 86 57.0
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 3.3e-12 75.9 89 58.4
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.3e-12 75.9 101 41.6
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 9.6e-12 74.3 107 38.3
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 6.2e-11 71.6 95 41.1
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.1e-10 70.9 83 51.8
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.9e-10 68.2 97 38.1
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.7e-08 63.5 45 62.2
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 7.9e-06 54.7 36 63.9


User provided reference genes

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