Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G089900 Populus trichocarpa HOM05D007142 ORTHO05D008983 4.6e-137 491.1 232 100.0
Sabra03G0059800 Salix brachista HOM05D007142 ORTHO05D008983 6.3e-126 454.1 254 85.8
GSVIVG01013184001 Vitis vinifera HOM05D007142 ORTHO05D008983 3.7e-118 428.3 228 89.0
TAR629G1364 Trochodendron aralioides HOM05D007142 ORTHO05D008983 3.2e-114 415.2 230 83.0
Dinv28934 Davidia involucrata HOM05D007142 ORTHO05D008983 5.5e-114 414.5 233 85.8
QL12p006204 Quercus lobata HOM05D007142 ORTHO05D008983 9.4e-114 413.7 231 82.7
COL.COLO4_17070 Corchorus olitorius HOM05D007142 ORTHO05D008983 2.7e-113 412.1 230 84.8
Thecc.03G230800 Theobroma cacao HOM05D007142 ORTHO05D008983 4.7e-113 411.4 229 85.6
CiPaw.11G091400 Carya illinoinensis HOM05D007142 ORTHO05D008983 6.1e-113 411.0 228 84.6
Manes.17G016003 Manihot esculenta HOM05D007142 ORTHO05D008983 8.0e-113 410.6 232 83.6
VMungo0251G3176 Vigna mungo HOM05D007142 ORTHO05D008983 8.0e-113 410.6 228 85.5
Glyma.17G154151 Glycine max HOM05D007142 ORTHO05D008983 1.4e-112 409.8 228 85.1
Prupe.5G040300 Prunus persica HOM05D007142 ORTHO05D008983 1.4e-112 409.8 232 84.5
Duzib205G0350 Durio zibethinus HOM05D007142 ORTHO05D008983 1.8e-112 409.5 233 85.0
Medtr4g098620 Medicago truncatula HOM05D007142 ORTHO05D008983 2.3e-112 409.1 229 82.5
Haze_08264 Corylus avellana HOM05D007142 ORTHO05D008983 5.2e-112 407.9 234 83.8
Atru.chr6.1752 Acer truncatum HOM05D007142 ORTHO05D008983 6.7e-112 407.5 230 83.0
Ciclev10032530m.g Citrus clementina HOM05D007142 ORTHO05D008983 1.2e-111 406.8 234 85.9
Gohir.D08G178400 Gossypium hirsutum HOM05D007142 ORTHO05D008983 1.5e-111 406.4 232 83.6
Gorai.004G186600 Gossypium raimondii HOM05D007142 ORTHO05D008983 1.5e-111 406.4 232 83.6
Phvul.003G229700 Phaseolus vulgaris HOM05D007142 ORTHO05D008983 1.5e-111 406.4 228 84.2
Actinidia25952 Actinidia chinensis HOM05D007142 ORTHO05D008983 2.0e-111 406.0 234 81.2
MD06G1031800 Malus domestica HOM05D007142 ORTHO05D008983 2.0e-111 406.0 230 82.2
Eucgr.D02183 Eucalyptus grandis HOM05D007142 ORTHO05D008983 3.3e-111 405.2 229 83.0
TPR.G28665 Trifolium pratense HOM05D007142 ORTHO05D008983 1.3e-110 403.3 229 82.5
TWI15G0113 Tripterygium wilfordii HOM05D007142 ORTHO05D008983 2.8e-110 402.1 218 87.2
Lalb_Chr09g0329501 Lupinus albus HOM05D007142 ORTHO05D008983 7.0e-109 397.5 232 81.0
Lj4g0022330 Lotus japonicus HOM05D007142 ORTHO05D008983 2.0e-108 396.0 230 81.3
Psat4g079200 Pisum sativum HOM05D007142 ORTHO05D008983 1.3e-107 393.3 231 80.5
Aqoxy3G02453 Aquilegia oxysepala HOM05D007142 ORTHO05D008983 5.0e-107 391.3 231 80.1
Lsat_1_v5_gn_3_16621 Lactuca sativa HOM05D007142 ORTHO05D008983 5.0e-107 391.3 229 79.5
ECA246G1460 Erigeron canadensis HOM05D007142 ORTHO05D008983 1.9e-106 389.4 229 78.6
Cc08_g02450 Coffea canephora HOM05D007142 ORTHO05D000161 4.2e-106 388.3 237 77.6
EL10Ac5g12171 Beta vulgaris HOM05D007142 ORTHO05D008983 9.4e-106 387.1 228 78.9
Nitab4.5_0003100g0010 Nicotiana tabacum HOM05D007142 ORTHO05D008983 9.4e-106 387.1 227 80.2
FAN08G2513 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.2e-105 386.7 221 84.2
FvH4_5g21680 Fragaria vesca HOM05D007142 ORTHO05D008983 2.1e-105 386.0 221 84.2
PGR031G3753 Punica granatum HOM05D007142 ORTHO05D008983 2.1e-105 386.0 214 84.6
Ah.12g054590 Amaranthus hybridus HOM05D007142 ORTHO05D008983 4.7e-105 384.8 229 79.5
RcHm_v2.0_Chr7g0209181 Rosa chinensis HOM05D007142 ORTHO05D008983 6.1e-105 384.4 219 84.0
FAN18G0559 Fragaria x ananassa HOM05D007142 ORTHO05D008983 8.0e-105 384.0 221 83.7
DCAR_032211 Daucus carota HOM05D007142 ORTHO05D008983 1.8e-104 382.9 233 78.1
HanXRQChr17g0535721 Helianthus annuus HOM05D007142 ORTHO05D008983 1.8e-104 382.9 229 77.7
vmacro00342 Vaccinium macrocarpon HOM05D007142 ORTHO05D008983 8.8e-104 380.6 224 80.8
Nitab4.5_0014378g0020 Nicotiana tabacum HOM05D007142 ORTHO05D008983 1.2e-103 380.2 228 78.9
CANSAT21G2079 Cannabis sativa HOM05D007142 ORTHO05D008983 1.5e-103 379.8 224 79.0
CAN.G201.17 Capsicum annuum HOM05D007142 ORTHO05D008983 1.3e-102 376.7 232 76.3
Cpa.g.sc665.3 Carica papaya HOM05D007142 ORTHO05D008983 1.7e-102 376.3 221 79.6
AUR62018753 Chenopodium quinoa HOM05D007142 ORTHO05D008983 2.8e-102 375.6 229 77.7
ClCG10G001790 Citrullus lanatus HOM05D007142 ORTHO05D008983 4.8e-102 374.8 230 77.4
CsaV3_3G001880 Cucumis sativus L. HOM05D007142 ORTHO05D008983 2.4e-101 372.5 233 77.3
ATR0049G055 Amborella trichopoda HOM05D007142 ORTHO05D008983 9.1e-101 370.5 227 78.4
arahy.Tifrunner.gnm1.ann1.J3YA34 Arachis hypogaea HOM05D007142 ORTHO05D008983 1.6e-100 369.8 223 77.1
Sopen06g021290 Solanum pennellii HOM05D007142 ORTHO05D008983 2.7e-100 369.0 232 76.3
MELO3C013862.2 Cucumis melo HOM05D007142 ORTHO05D008983 3.5e-100 368.6 222 79.7
Solyc06g061090.3 Solanum lycopersicum HOM05D007142 ORTHO05D008983 3.5e-100 368.6 232 76.3
PSO384G0274 Papaver somniferum HOM05D007142 ORTHO05D008983 5.9e-100 367.9 240 74.2
SGA_v2.0_scaffold4519G54498 Striga asiatica HOM05D007142 ORTHO05D008983 5.0e-99 364.8 219 78.1
PSO339G0102 Papaver somniferum HOM05D007142 ORTHO05D008983 6.5e-99 364.4 220 78.2
SalBow4G2536 Salvia bowleyana HOM05D007142 ORTHO05D008983 1.5e-98 363.2 236 74.6
THA.LOC104807961 Tarenaya hassleriana HOM05D007142 ORTHO05D008983 1.2e-97 360.1 246 73.6
Sed0005643 Sechium edule HOM05D007142 ORTHO05D008983 2.8e-97 359.0 224 77.7
Aa31LG2G13430 Aethionema arabicum HOM05D007142 ORTHO05D008983 8.0e-97 357.5 237 74.7
Thhalv10008641m.g Eutrema salsugineum HOM05D007142 ORTHO05D008983 1.4e-96 356.7 222 79.3
CDE11G1210 Ceratophyllum demersum HOM05D007142 ORTHO05D008983 1.8e-96 356.3 232 71.6
AT1G32520 Arabidopsis thaliana HOM05D007142 ORTHO05D008983 4.0e-96 355.1 241 74.7
A09p33690 Brassica napus HOM05D007142 ORTHO05D008983 1.2e-95 353.6 236 75.0
Migut.F01892 Erythranthe guttata HOM05D007142 ORTHO05D008983 2.6e-95 352.4 229 75.1
C05p31960 Brassica napus HOM05D007142 ORTHO05D008983 4.4e-95 351.7 236 74.6
BolC5t31922H Brassica oleracea HOM05D007142 ORTHO05D008983 4.4e-95 351.7 236 74.6
Sc10g0005600 Simmondsia chinensis HOM05D007142 ORTHO05D008983 5.7e-95 351.3 217 77.0
BraA09t38918Z Brassica rapa HOM05D007142 ORTHO05D008983 7.5e-95 350.9 236 74.6
BcaB07g32947 Brassica carinata HOM05D007142 ORTHO05D008983 9.8e-95 350.5 222 76.6
BcaC05g27290 Brassica carinata HOM05D007142 ORTHO05D008983 1.3e-94 350.1 236 74.2
CARHR031970 Cardamine hirsuta HOM05D007142 ORTHO05D008983 2.8e-94 349.0 239 72.0
MSTRG.9125 Avicennia marina HOM05D007142 ORTHO05D008983 6.3e-94 347.8 231 72.7
Peaxi162Scf00603g00413 Petunia axillaris HOM05D007142 ORTHO05D008983 8.3e-94 347.4 218 77.1
AL1G46770 Arabidopsis lyrata HOM05D007142 ORTHO05D008983 1.8e-93 346.3 241 73.0
Carub.0001s3093 Capsella rubella HOM05D007142 ORTHO05D008983 4.1e-93 345.1 223 75.3
FAN04G2755 Fragaria x ananassa HOM05D007142 ORTHO05D008983 1.0e-91 340.5 222 77.0
HPP92_004467 Vanilla planifolia HOM05D007142 ORTHO05D008983 2.5e-90 335.9 221 71.9
Nn6g33627 Nelumbo nucifera HOM05D007142 ORTHO05D008983 3.3e-90 335.5 173 90.8
HPP92_004488 Vanilla planifolia HOM05D007142 ORTHO05D008983 7.3e-90 334.3 221 71.5
AUR62007246 Chenopodium quinoa HOM05D007142 ORTHO05D008983 2.8e-89 332.4 205 76.6
Lj2C242T12 Lonicera japonica HOM05D007142 ORTHO05D008983 2.8e-89 332.4 173 90.8
PGSC0003DMG400002104 Solanum tuberosum HOM05D007142 ORTHO05D008983 1.7e-86 323.2 195 79.5
Rhsim11G0012900 Rhododendron simsii HOM05D007142 ORTHO05D008983 4.9e-86 321.6 179 85.5
Sp1g28380 Schrenkiella parvula HOM05D007142 ORTHO05D008983 4.9e-86 321.6 203 77.3
Zm00001eb090700 Zea mays HOM05D007142 ORTHO05D008983 1.4e-85 320.1 220 67.7
unitig_32.g11901 Utricularia gibba HOM05D007142 ORTHO05D008983 1.8e-85 319.7 230 69.1
FAN13G1057 Fragaria x ananassa HOM05D007142 ORTHO05D008983 3.5e-84 315.5 183 83.6
Mapoly0005s0008 Marchantia polymorpha HOM05D007142 ORTHO05D008983 2.3e-83 312.8 218 66.5
MBI04_g22954_MAGBIO Magnolia biondii HOM05D007142 ORTHO05D008983 2.1e-81 306.2 172 86.0
arahy.Tifrunner.gnm1.ann1.KYR2NU Arachis hypogaea HOM05D007142 ORTHO05D008983 9.8e-79 297.4 219 67.1
AagrBONN_evm.TU.Sc2ySwM_362.655 Anthoceros agrestis HOM05D007142 ORTHO05D008983 1.9e-77 293.1 209 67.5
Gohir.A08G158100 Gossypium hirsutum HOM05D007142 ORTHO05D008983 1.9e-74 283.1 176 76.1
SEGI_34411 Sequoiadendron giganteum HOM05D007142 ORTHO05D008983 1.5e-71 273.5 197 66.0
Os11g0220300 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 2.6e-47 193.0 145 63.4
SMO367G0110 Selaginella moellendorffii HOM05D007142 ORTHO05D008983 3.8e-46 189.1 126 72.2
PRCOL_00005169 Prasinoderma coloniale HOM05D007142 ORTHO05D008983 1.1e-40 171.0 191 48.2
MCO11G179 Micromonas commoda HOM05D007142 ORTHO05D008983 6.0e-28 128.6 185 41.1
Os07g0120051 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 1.8e-27 127.1 119 56.3
Hma1.2p1_0585F.1_g183620 Hydrangea macrophylla HOM05D007142 ORTHO05D008983 1.4e-24 117.5 62 90.3
Oeu029960.1 Olea europaea HOM05D007142 ORTHO05D008983 2.9e-22 109.8 62 85.5
Glyma.05G112900 Glycine max HOM05D007142 ORTHO05D008983 5.0e-22 109.0 173 41.6
Dinv25200 Davidia involucrata HOM05D007142 ORTHO05D008983 1.2e-20 104.4 151 42.4
MCO05G635 Micromonas commoda HOM05D007142 ORTHO05D008983 1.8e-11 73.9 171 28.7
Os06g0318400 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 3.9e-11 72.8 76 51.3
Os11g0275900 Oryza sativa ssp. japonica HOM05D007142 ORTHO05D008983 4.8e-09 65.9 42 73.8


User provided reference genes

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