Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 6.2e-42 173.7 88 100.0
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.0e-12 76.6 75 57.3
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.4e-12 76.3 75 56.0
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.8e-12 75.9 75 56.0
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 8.8e-12 73.6 80 52.5
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 8.8e-12 73.6 75 54.7
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 1.1e-11 73.2 84 47.6
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.1e-11 73.2 75 53.3
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 1.1e-11 73.2 75 54.7
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 1.1e-11 73.2 75 52.0
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 1.5e-11 72.8 75 52.0
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 2.0e-11 72.4 75 54.7
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 2.5e-11 72.0 74 56.8
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 2.5e-11 72.0 75 54.7
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 3.3e-11 71.6 83 55.4
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 4.3e-11 71.2 75 57.3
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.3e-11 71.2 75 53.3
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.7e-11 70.9 75 54.7
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 5.7e-11 70.9 75 54.7
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 5.7e-11 70.9 75 54.7
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.3e-10 69.7 75 52.0
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 1.7e-10 69.3 75 52.0
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 1.7e-10 69.3 75 54.7
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 2.2e-10 68.9 71 54.9
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 2.2e-10 68.9 71 54.9
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 2.2e-10 68.9 75 54.7
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 3.7e-10 68.2 75 50.7
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 3.7e-10 68.2 75 50.7
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.7e-10 68.2 73 53.4
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 4.8e-10 67.8 75 53.3
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 4.8e-10 67.8 77 51.9
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 4.8e-10 67.8 75 53.3
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 4.8e-10 67.8 72 55.6
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 4.8e-10 67.8 75 56.0
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 49.3
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 52.0
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 52.0
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 54.7
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 54.7
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 6.3e-10 67.4 75 52.0
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 8.2e-10 67.0 75 52.0
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 8.2e-10 67.0 75 52.0
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 8.2e-10 67.0 75 53.3
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 1.4e-09 66.2 75 52.0
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 1.4e-09 66.2 75 52.0
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 52.0
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.8e-09 65.9 75 49.3
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.4e-09 65.5 72 54.2
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 2.4e-09 65.5 72 54.2
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.4e-09 65.5 73 52.1
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 2.4e-09 65.5 73 50.7
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 3.1e-09 65.1 75 50.7
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.1e-09 65.1 72 54.2
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 3.1e-09 65.1 77 46.8
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 3.1e-09 65.1 73 50.7
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 4.1e-09 64.7 74 48.6
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 4.1e-09 64.7 75 52.0
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 5.3e-09 64.3 75 50.7
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 5.3e-09 64.3 75 48.0
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 6.9e-09 63.9 75 50.7
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 6.9e-09 63.9 75 50.7
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 6.9e-09 63.9 74 51.4
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 6.9e-09 63.9 74 51.4
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 6.9e-09 63.9 76 48.7
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 9.1e-09 63.5 75 48.0
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.2e-08 63.2 71 52.1
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 1.2e-08 63.2 75 50.7
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 1.2e-08 63.2 75 50.7
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.2e-08 63.2 75 49.3
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.2e-08 63.2 73 49.3
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 2.0e-08 62.4 70 54.3
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 2.6e-08 62.0 76 48.7
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 5.9e-08 60.8 73 46.6
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 5.9e-08 60.8 72 52.8
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 6.5e-07 57.4 72 45.8
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 1.1e-06 56.6 65 47.7
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.9e-06 55.8 73 41.1
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 7.2e-06 53.9 28 89.3


User provided reference genes

Program Settings