Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 5.5e-178 627.5 306 100.0
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.8e-141 506.1 308 82.5
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.4e-141 505.8 310 80.0
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 2.4e-141 505.8 311 80.1
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 4.1e-141 505.0 314 79.3
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.0e-140 502.7 311 79.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 2.7e-140 502.3 304 79.9
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 3.5e-140 501.9 298 81.5
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 1.3e-139 500.0 314 79.3
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 2.9e-139 498.8 305 80.3
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 5.0e-139 498.0 301 80.1
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 1.9e-138 496.1 292 81.8
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 2.5e-138 495.7 292 81.8
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.2e-138 495.4 295 80.0
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 4.2e-138 495.0 280 82.9
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 4.2e-138 495.0 306 80.1
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.8e-136 489.6 310 79.0
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.2e-136 488.0 298 79.2
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 5.2e-136 488.0 297 80.1
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 8.8e-136 487.3 303 78.9
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 2.6e-135 485.7 303 79.2
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 3.4e-135 485.3 299 78.6
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 4.4e-135 485.0 284 80.3
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 5.7e-135 484.6 298 77.5
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 7.5e-135 484.2 303 76.9
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.2e-134 482.6 299 78.9
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.2e-134 482.6 302 77.5
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 3.7e-134 481.9 304 77.3
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 6.3e-134 481.1 302 78.1
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 6.3e-134 481.1 279 81.0
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.8e-133 479.6 298 76.8
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 7.0e-133 477.6 298 77.2
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 9.1e-133 477.2 298 76.8
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.7e-132 475.7 298 77.9
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 2.7e-132 475.7 280 81.1
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 5.9e-132 474.6 280 80.4
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.0e-131 473.8 298 76.5
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 1.0e-131 473.8 280 81.1
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.3e-131 473.4 308 75.6
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.7e-131 473.0 297 76.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-131 473.0 298 76.8
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.7e-131 473.0 305 75.4
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.7e-131 473.0 305 75.4
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.7e-131 473.0 303 76.2
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.3e-131 472.6 306 74.8
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 2.3e-131 472.6 280 80.0
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.3e-131 472.6 301 77.7
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.8e-131 471.9 283 80.9
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.6e-131 471.1 306 77.1
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 8.6e-131 470.7 298 75.8
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 8.6e-131 470.7 299 75.3
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 1.9e-130 469.5 303 76.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 2.5e-130 469.2 260 83.5
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 3.3e-130 468.8 298 75.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 4.2e-130 468.4 298 75.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.5e-130 468.0 304 74.7
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 9.5e-130 467.2 298 75.8
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.6e-129 466.5 329 71.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 2.1e-129 466.1 306 74.8
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.1e-129 466.1 303 75.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.0e-128 463.8 295 78.0
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-128 462.6 309 74.8
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 5.2e-128 461.5 299 75.3
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 6.8e-128 461.1 280 78.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 8.9e-128 460.7 298 74.5
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 8.9e-128 460.7 271 79.7
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 2.6e-127 459.1 298 75.5
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.4e-127 458.8 293 75.8
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 4.4e-127 458.4 309 73.5
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 4.4e-127 458.4 298 74.2
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 1.3e-126 456.8 306 74.5
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 3.7e-126 455.3 310 74.5
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 1.6e-124 449.9 302 71.2
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 2.0e-124 449.5 303 71.9
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 2.0e-124 449.5 303 70.3
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 6.6e-123 444.5 301 73.4
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.9e-122 443.0 308 71.8
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.5e-122 442.6 294 71.8
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 5.6e-122 441.4 286 74.8
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 7.3e-122 441.0 303 71.0
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.6e-121 439.9 306 70.6
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.6e-121 439.9 300 71.7
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 2.8e-121 439.1 298 69.8
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.0e-120 437.2 285 73.0
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 5.2e-120 434.9 292 74.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 5.2e-120 434.9 405 57.8
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 6.4e-118 427.9 298 70.8
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.2e-116 423.7 246 82.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 6.6e-115 417.9 312 69.2
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 4.7e-113 411.8 296 69.3
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 6.2e-113 411.4 299 68.9
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 6.2e-113 411.4 299 68.9
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 7.5e-111 404.4 265 74.3
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 1.3e-110 403.7 259 74.1
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 6.4e-110 401.4 283 69.6
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 9.2e-109 397.5 316 64.6
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 5.6e-106 388.3 212 86.3
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 9.5e-106 387.5 247 74.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 4.4e-103 378.6 211 85.8
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 3.7e-102 375.6 301 63.8
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 2.5e-98 362.8 258 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 7.3e-98 361.3 249 69.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 7.3e-98 361.3 292 63.4
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 4.7e-97 358.6 243 74.5
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.6e-92 342.0 248 68.1
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 8.7e-91 337.8 202 77.7
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.1e-90 337.4 202 76.2
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.0e-83 314.3 207 79.7
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.1e-72 276.2 310 52.3
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 8.4e-70 268.1 262 51.5
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 1.4e-69 267.3 269 48.3
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 1.9e-66 256.9 263 54.8
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.4e-64 250.8 187 74.9
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 4.1e-56 222.6 264 46.2
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 5.9e-55 218.8 294 48.0
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.2e-53 212.6 128 77.3
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.9e-48 195.3 149 69.1
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.8e-41 173.3 97 84.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 4.8e-41 172.6 162 59.3
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.4e-32 144.4 91 75.8
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 1.6e-31 141.0 81 76.5
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 3.2e-29 133.3 66 84.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 5.5e-29 132.5 106 63.2
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.1e-16 91.7 76 61.8
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 5.0e-14 82.8 56 69.6
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 5.2e-11 72.8 57 63.2
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 6.3e-09 65.9 39 79.5
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 7.0e-08 62.4 33 81.8


User provided reference genes

Program Settings