Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 0.0e+00 1082.8 548 100.0
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 2.5e-258 895.2 555 84.3
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 3.2e-96 356.7 558 44.8
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 6.8e-78 295.8 566 40.5
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 2.6e-77 293.9 566 40.3
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 1.0e-70 271.9 552 37.3
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 2.1e-63 247.7 533 37.1
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 8.3e-60 235.7 545 34.9
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 5.0e-57 226.5 553 35.1
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 8.9e-54 215.7 475 38.1
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 2.6e-53 214.2 557 35.2
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 5.8e-53 213.0 451 37.7
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 4.9e-52 209.9 553 33.3
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 1.4e-51 208.4 482 36.3
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.9e-51 208.0 557 32.3
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 2.3e-49 201.1 555 34.6
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 3.0e-49 200.7 494 35.6
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 6.6e-49 199.5 583 33.3
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 8.6e-49 199.1 556 32.2
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 1.5e-48 198.4 543 32.6
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.5e-48 198.4 563 32.1
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 8.1e-47 192.6 440 36.8
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.2e-45 188.7 543 31.3
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 3.0e-41 174.1 467 36.0
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 6.6e-41 172.9 459 33.3
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 8.6e-41 172.6 552 32.1
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 7.3e-40 169.5 488 32.6
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 6.2e-39 166.4 547 30.9
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 5.2e-38 163.3 463 33.7
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.7e-36 158.3 469 32.0
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 2.2e-36 157.9 550 30.7
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 6.4e-36 156.4 390 34.4
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 8.4e-36 156.0 560 30.2
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 4.1e-35 153.7 467 31.3
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 4.1e-35 153.7 455 33.4
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 4.1e-35 153.7 483 32.7
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 2.7e-34 151.0 455 33.0
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 1.3e-33 148.7 553 28.0
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 2.5e-32 144.4 463 33.0
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.2e-31 142.1 297 39.1
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 1.2e-31 142.1 559 30.9
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 1.2e-31 142.1 460 30.9
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 1.6e-31 141.7 445 30.8
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 2.1e-31 141.4 452 30.5
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 2.8e-31 141.0 459 30.3
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 4.0e-30 137.1 448 30.4
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 6.9e-30 136.3 461 32.1
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.5e-29 135.2 542 28.4
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 3.4e-29 134.0 537 27.4
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 4.4e-29 133.7 602 27.2
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 1.7e-28 131.7 456 30.0
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 1.7e-28 131.7 456 30.0
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 1.7e-28 131.7 448 31.7
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 2.2e-28 131.3 547 29.1
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 8.4e-28 129.4 532 28.9
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 8.4e-28 129.4 460 29.1
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 1.4e-27 128.6 457 29.3
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 1.4e-27 128.6 350 33.4
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 2.4e-27 127.9 450 30.2
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 3.2e-27 127.5 453 28.9
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 7.1e-27 126.3 466 29.6
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.6e-26 125.2 508 32.7
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 3.5e-26 124.0 342 31.3
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 4.6e-26 123.6 528 27.8
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 7.8e-26 122.9 547 28.7
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 7.8e-26 122.9 560 28.0
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 2.3e-25 121.3 239 38.1
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 3.0e-25 120.9 534 28.1
Rhsim07G0117200 Rhododendron simsii HOM05D007047 ORTHO05D009177 3.0e-25 120.9 449 31.0
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 1.5e-24 118.6 531 28.2
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 7.3e-24 116.3 472 27.8
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 1.6e-23 115.2 541 27.2
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 1.6e-23 115.2 453 31.1
CSS0009500 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 3.6e-23 114.0 446 29.6
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 6.2e-23 113.2 539 27.8
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 8.1e-23 112.8 470 27.9
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 1.1e-22 112.5 529 28.0
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.8e-22 111.7 477 28.9
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.8e-22 111.7 453 29.1
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 3.1e-22 110.9 470 27.4
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 2.6e-21 107.8 334 29.9
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 7.6e-21 106.3 267 34.5
Rhsim07G0117500 Rhododendron simsii HOM05D007047 ORTHO05D009177 9.9e-21 105.9 355 30.4
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 2.2e-20 104.8 365 31.2
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 4.9e-20 103.6 345 28.1
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 4.2e-19 100.5 544 26.1
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 2.7e-18 97.8 333 31.2
Cpa.g.sc89.13 Carica papaya HOM05D007047 ORTHO05D009177 6.0e-18 96.7 179 36.3
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.0e-17 95.9 343 28.0
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 4.3e-16 90.5 120 42.5
Aqoxy3G02722 Aquilegia oxysepala HOM05D007047 ORTHO05D009177 7.4e-16 89.7 447 26.6
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.6e-15 88.6 333 27.0
ECA240G0572 Erigeron canadensis HOM05D007047 ORTHO05D009177 1.1e-14 85.9 159 37.7
Psat2g156960 Pisum sativum HOM05D007047 ORTHO05D009177 3.8e-12 77.4 138 38.4
HPP92_022107 Vanilla planifolia HOM05D007047 ORTHO05D009177 1.1e-11 75.9 147 36.7
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 1.4e-11 75.5 118 37.3
Psat0s1776g0120 Pisum sativum HOM05D007047 ORTHO05D009177 1.9e-11 75.1 138 38.4
Sc07g0009150 Simmondsia chinensis HOM05D007047 ORTHO05D009177 7.9e-10 69.7 220 32.7
FvH4_5g19900 Fragaria vesca HOM05D007047 ORTHO05D009177 1.0e-09 69.3 126 40.5
Medtr5g013080 Medicago truncatula HOM05D007047 ORTHO05D009177 1.0e-09 69.3 55 49.1
unitig_744.g24476 Utricularia gibba HOM05D007047 ORTHO05D009177 1.8e-09 68.6 116 37.9
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 8.7e-09 66.2 222 32.4
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.5e-08 65.5 121 30.6
FAN18G3996 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.1e-07 61.6 78 47.4
HanXRQChr11g0329491 Helianthus annuus HOM05D007047 ORTHO05D009177 2.8e-07 61.2 52 53.8
FAN18G3895 Fragaria x ananassa HOM05D007047 ORTHO05D009177 6.2e-07 60.1 374 24.6
ATR0057G113 Amborella trichopoda HOM05D007047 ORTHO05D009177 5.3e-06 57.0 112 33.9


User provided reference genes

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