Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G079400 Populus trichocarpa HOM05D005741 ORTHO05D007240 1.8e-290 1001.9 510 100.0
Sabra03G0049500 Salix brachista HOM05D005741 ORTHO05D007240 1.1e-247 859.8 447 94.4
Manes.01G083800 Manihot esculenta HOM05D005741 ORTHO05D007240 2.3e-213 745.7 508 72.8
Thecc.03G247800 Theobroma cacao HOM05D005741 ORTHO05D007240 3.2e-191 672.2 509 67.2
Duzib084G1038 Durio zibethinus HOM05D005741 ORTHO05D007240 1.1e-188 663.7 458 72.1
CiPaw.11G082200 Carya illinoinensis HOM05D005741 ORTHO05D007240 9.7e-188 660.6 507 67.3
TWI15G0579 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 9.7e-188 660.6 509 66.4
Haze_07941 Corylus avellana HOM05D005741 ORTHO05D007240 2.4e-186 656.0 507 66.1
CANSAT21G0669 Cannabis sativa HOM05D005741 ORTHO05D007240 3.1e-186 655.6 496 66.5
Atru.chr9.1271 Acer truncatum HOM05D005741 ORTHO05D007240 5.3e-186 654.8 505 65.5
Gohir.D09G191200 Gossypium hirsutum HOM05D005741 ORTHO05D007240 9.1e-186 654.1 507 64.9
Gohir.A09G196600 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.5e-185 652.1 506 64.4
Gorai.003G175200 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.5e-185 652.1 508 64.0
Duzib205G0633 Durio zibethinus HOM05D005741 ORTHO05D007240 7.7e-185 651.0 464 70.5
QL12p011266 Quercus lobata HOM05D005741 ORTHO05D007240 7.7e-185 651.0 502 67.1
Gorai.006G214000 Gossypium raimondii HOM05D005741 ORTHO05D007240 3.8e-184 648.7 507 64.5
TWI81G0674 Tripterygium wilfordii HOM05D005741 ORTHO05D007240 8.5e-184 647.5 508 64.8
RcHm_v2.0_Chr7g0204071 Rosa chinensis HOM05D005741 ORTHO05D007240 4.2e-183 645.2 497 66.4
THA.LOC104806667 Tarenaya hassleriana HOM05D005741 ORTHO05D007240 1.2e-182 643.7 511 62.8
Gohir.D03G165500 Gossypium hirsutum HOM05D005741 ORTHO05D007240 3.6e-182 642.1 508 62.8
Prupe.5G065000 Prunus persica HOM05D005741 ORTHO05D007240 5.7e-180 634.8 501 64.3
Ciclev10019844m.g Citrus clementina HOM05D005741 ORTHO05D007240 6.3e-179 631.3 508 63.4
Actinidia02155 Actinidia chinensis HOM05D005741 ORTHO05D007240 1.1e-178 630.6 436 71.6
Eucgr.E00405 Eucalyptus grandis HOM05D005741 ORTHO05D007240 1.8e-178 629.8 443 69.3
FAN13G2335 Fragaria x ananassa HOM05D005741 ORTHO05D007240 2.7e-177 625.9 504 63.3
FvH4_5g19490 Fragaria vesca HOM05D005741 ORTHO05D007240 4.5e-177 625.2 504 63.5
MD04G1060600 Malus domestica HOM05D005741 ORTHO05D007240 2.2e-176 622.9 460 66.5
GSVIVG01005817001 Vitis vinifera HOM05D005741 ORTHO05D007240 1.1e-175 620.5 461 68.8
FAN18G1401 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.9e-175 619.8 504 63.1
FAN18G3259 Fragaria x ananassa HOM05D005741 ORTHO05D007240 4.2e-175 618.6 504 62.9
CSS0012403 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.7e-174 615.9 506 63.4
Thhalv10024957m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 3.6e-174 615.5 510 60.8
FAN04G2833 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.8e-173 613.2 504 62.5
COL.COLO4_37119 Corchorus olitorius HOM05D005741 ORTHO05D007240 5.2e-173 611.7 404 71.5
CsaV3_5G004450 Cucumis sativus L. HOM05D005741 ORTHO05D007240 5.2e-173 611.7 438 67.6
Ca_17300_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 1.2e-172 610.5 454 64.8
MELO3C005514.2 Cucumis melo HOM05D005741 ORTHO05D007240 2.0e-172 609.8 453 65.8
PGSC0003DMG400004829 Solanum tuberosum HOM05D005741 ORTHO05D007240 4.4e-172 608.6 495 62.8
Solyc08g078380.3 Solanum lycopersicum HOM05D005741 ORTHO05D007240 5.7e-172 608.2 495 62.8
Sopen08g026870 Solanum pennellii HOM05D005741 ORTHO05D007240 1.7e-171 606.7 495 62.8
CARHR224030 Cardamine hirsuta HOM05D005741 ORTHO05D007240 8.3e-171 604.4 498 60.6
PSO782G4316 Papaver somniferum HOM05D005741 ORTHO05D007240 3.5e-169 599.0 464 64.0
Lj2g0010165 Lotus japonicus HOM05D005741 ORTHO05D007240 1.3e-168 597.0 459 63.4
FAN08G2842 Fragaria x ananassa HOM05D005741 ORTHO05D007240 1.7e-168 596.7 503 61.0
Sed0015384 Sechium edule HOM05D005741 ORTHO05D007240 1.7e-168 596.7 454 65.2
Phvul.004G038100 Phaseolus vulgaris HOM05D005741 ORTHO05D007240 2.3e-168 596.3 455 63.7
TPR.G32686 Trifolium pratense HOM05D005741 ORTHO05D007240 2.3e-168 596.3 452 62.6
AL7G37290 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 2.9e-168 595.9 461 64.0
Medtr8g104850 Medicago truncatula HOM05D005741 ORTHO05D007240 3.8e-168 595.5 441 65.1
PSO063G3551 Papaver somniferum HOM05D005741 ORTHO05D007240 3.8e-168 595.5 499 62.3
Peaxi162Scf00214g00035 Petunia axillaris HOM05D005741 ORTHO05D007240 3.8e-168 595.5 491 63.3
Lj2A224T24 Lonicera japonica HOM05D005741 ORTHO05D007240 6.5e-168 594.7 499 60.7
Nitab4.5_0001381g0010 Nicotiana tabacum HOM05D005741 ORTHO05D007240 6.5e-168 594.7 505 63.8
C01p25020 Brassica napus HOM05D005741 ORTHO05D007240 8.6e-168 594.3 500 59.6
BolC1t02446H Brassica oleracea HOM05D005741 ORTHO05D007240 8.6e-168 594.3 500 59.6
Ca_17307_v3 Cicer arietinum L. HOM05D005741 ORTHO05D007240 8.6e-168 594.3 428 65.9
Nitab4.5_0003050g0020 Nicotiana tabacum HOM05D005741 ORTHO05D007240 1.9e-167 593.2 444 66.7
Glyma.13G055300 Glycine max HOM05D005741 ORTHO05D007240 2.5e-167 592.8 454 63.2
DCAR_008509 Daucus carota HOM05D005741 ORTHO05D007240 5.5e-167 591.7 496 60.7
Psat7g009600 Pisum sativum HOM05D005741 ORTHO05D007240 5.5e-167 591.7 442 63.8
BcaNung00094 Brassica carinata HOM05D005741 ORTHO05D007240 1.2e-166 590.5 499 59.7
CAN.G1178.14 Capsicum annuum HOM05D005741 ORTHO05D007240 1.6e-166 590.1 449 66.1
Migut.A01137 Erythranthe guttata HOM05D005741 ORTHO05D007240 4.7e-166 588.6 430 66.0
BraA01t01920Z Brassica rapa HOM05D005741 ORTHO05D007240 6.1e-166 588.2 499 58.9
AT4G17430 Arabidopsis thaliana HOM05D005741 ORTHO05D007240 8.0e-166 587.8 513 59.3
BcaC09g50473 Brassica carinata HOM05D005741 ORTHO05D007240 1.4e-165 587.0 500 59.0
A01p19940 Brassica napus HOM05D005741 ORTHO05D007240 2.3e-165 586.3 499 58.9
Nn6g33867 Nelumbo nucifera HOM05D005741 ORTHO05D007240 3.0e-165 585.9 492 58.9
Lalb_Chr07g0190101 Lupinus albus HOM05D005741 ORTHO05D007240 6.8e-165 584.7 446 63.5
vmacro00008 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 1.5e-164 583.6 557 56.6
VMungo0464G0479 Vigna mungo HOM05D005741 ORTHO05D007240 2.6e-164 582.8 435 65.1
arahy.Tifrunner.gnm1.ann1.915X16 Arachis hypogaea HOM05D005741 ORTHO05D007240 2.2e-163 579.7 441 63.3
Aa31sc151G50 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.8e-163 579.3 509 58.0
Carub.0007s2399 Capsella rubella HOM05D005741 ORTHO05D007240 2.8e-163 579.3 506 60.1
arahy.Tifrunner.gnm1.ann1.F09Q1T Arachis hypogaea HOM05D005741 ORTHO05D007240 8.3e-163 577.8 451 61.6
HanXRQChr16g0501101 Helianthus annuus HOM05D005741 ORTHO05D007240 1.1e-162 577.4 505 59.8
ClCG01G004250 Citrullus lanatus HOM05D005741 ORTHO05D007240 1.4e-162 577.0 451 63.0
EL10Ac1g01729 Beta vulgaris HOM05D005741 ORTHO05D007240 1.6e-161 573.5 426 65.3
Sc22g0001010 Simmondsia chinensis HOM05D005741 ORTHO05D007240 9.5e-159 564.3 426 63.8
Lsat_1_v5_gn_6_59361 Lactuca sativa HOM05D005741 ORTHO05D007240 2.8e-158 562.8 462 60.4
Aqoxy3G02814 Aquilegia oxysepala HOM05D005741 ORTHO05D007240 4.7e-158 562.0 461 59.9
TAR629G0196 Trochodendron aralioides HOM05D005741 ORTHO05D007240 1.3e-155 553.9 403 67.2
Thhalv10000864m.g Eutrema salsugineum HOM05D005741 ORTHO05D007240 1.7e-155 553.5 513 56.7
SHI07684 Sapria himalayana HOM05D005741 ORTHO05D007240 2.2e-155 553.1 458 60.0
SGA_v2.0_scaffold199G41222 Striga asiatica HOM05D005741 ORTHO05D007240 1.2e-150 537.3 491 55.8
Rhsim03G0144800 Rhododendron simsii HOM05D005741 ORTHO05D007240 2.8e-150 536.2 460 60.2
AUR62022412 Chenopodium quinoa HOM05D005741 ORTHO05D007240 8.0e-150 534.6 405 65.4
Cc08_g12130 Coffea canephora HOM05D005741 ORTHO05D007240 8.0e-150 534.6 511 55.0
PGR042G2173 Punica granatum HOM05D005741 ORTHO05D007240 1.8e-149 533.5 433 60.0
CDE02G0403 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 4.0e-149 532.3 468 57.9
SalBow5G2168 Salvia bowleyana HOM05D005741 ORTHO05D007240 3.4e-148 529.3 443 60.9
Gohir.A03G006700 Gossypium hirsutum HOM05D005741 ORTHO05D007240 5.8e-148 528.5 356 71.1
CDE09G0915 Ceratophyllum demersum HOM05D005741 ORTHO05D007240 7.5e-148 528.1 468 57.9
AUR62042169 Chenopodium quinoa HOM05D005741 ORTHO05D007240 7.5e-148 528.1 405 64.4
ATR0057G109 Amborella trichopoda HOM05D005741 ORTHO05D007240 2.9e-147 526.2 505 53.5
unitig_0.g1051 Utricularia gibba HOM05D005741 ORTHO05D007240 3.2e-146 522.7 429 58.5
Hund30921 Selenicereus undatus HOM05D005741 ORTHO05D007240 3.5e-145 519.2 417 61.4
Zm00001eb023170 Zea mays HOM05D005741 ORTHO05D007240 7.8e-145 518.1 436 58.7
Hund20780 Selenicereus undatus HOM05D005741 ORTHO05D007240 2.3e-144 516.5 417 60.9
Os10g0561200 Oryza sativa ssp. japonica HOM05D005741 ORTHO05D007240 6.6e-144 515.0 436 57.6
SEGI_37405 Sequoiadendron giganteum HOM05D005741 ORTHO05D007240 1.1e-138 497.7 484 52.3
Dinv03497 Davidia involucrata HOM05D005741 ORTHO05D007240 8.6e-136 488.0 347 69.7
ECA233G5769 Erigeron canadensis HOM05D000263 ORTHO05D000213 3.6e-134 482.6 446 54.7
TAR365G0013 Trochodendron aralioides HOM05D005741 ORTHO05D007240 4.0e-133 479.2 346 68.2
Oeu036348.1 Olea europaea HOM05D005741 ORTHO05D007240 3.3e-127 459.5 348 64.7
Hma1.2p1_1136F.1_g260550 Hydrangea macrophylla HOM05D005741 ORTHO05D007240 9.6e-127 458.0 349 65.0
CSS0035552 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 9.9e-124 448.0 343 65.9
Cc11_g11020 Coffea canephora HOM05D005741 ORTHO05D007240 3.9e-104 382.9 286 66.1
AagrBONN_evm.TU.Sc2ySwM_228.4051__4052 Anthoceros agrestis HOM05D005741 ORTHO05D007240 1.5e-95 354.4 474 41.1
Dinv39172 Davidia involucrata HOM05D005741 ORTHO05D007240 1.2e-89 334.7 229 72.9
SMO358G0726 Selaginella moellendorffii HOM05D005741 ORTHO05D007240 2.2e-86 323.9 425 40.7
QL05p056282 Quercus lobata HOM05D005741 ORTHO05D007240 4.8e-86 322.8 403 47.1
Aa31LG6G180 Aethionema arabicum HOM05D005741 ORTHO05D007240 2.2e-78 297.4 230 63.0
QL05p056241 Quercus lobata HOM05D005741 ORTHO05D007240 2.8e-78 297.0 211 73.0
QL05p056380 Quercus lobata HOM05D005741 ORTHO05D007240 4.8e-78 296.2 212 70.8
MD06G1054000 Malus domestica HOM05D005741 ORTHO05D007240 1.2e-76 291.6 199 70.9
Lj1g0021170 Lotus japonicus HOM05D005741 ORTHO05D007240 2.2e-75 287.3 418 40.9
Mapoly0027s0023 Marchantia polymorpha HOM05D005741 ORTHO05D007240 1.4e-74 284.6 470 36.8
Glyma.19G032167 Glycine max HOM05D005741 ORTHO05D007240 6.1e-57 226.1 175 61.7
Sed0012710 Sechium edule HOM05D005741 ORTHO05D007240 1.7e-54 218.0 333 40.8
Mapoly0048s0017 Marchantia polymorpha HOM05D005741 ORTHO05D007240 3.1e-53 213.8 484 30.0
CSS0043083 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 1.5e-50 204.9 167 60.5
Glyma.19G032233 Glycine max HOM05D005741 ORTHO05D007240 9.5e-42 175.6 135 63.0
vmacro00009 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 3.1e-40 170.6 196 51.5
Pp3c6_17590 Physcomitrium patens HOM05D005741 ORTHO05D007240 7.5e-39 166.0 236 36.9
Actinidia14404 Actinidia chinensis HOM05D005741 ORTHO05D007240 5.0e-35 153.3 339 33.3
vmacro00011 Vaccinium macrocarpon HOM05D005741 ORTHO05D007240 8.0e-33 146.0 273 37.4
CSS0008948 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 5.8e-31 139.8 113 62.8
CSS0007358 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.2e-30 137.9 115 60.0
CSS0012087 Camellia sinensis var. sinensis HOM05D005741 ORTHO05D007240 2.9e-30 137.5 115 60.9
Oeu057691.1 Olea europaea HOM05D005741 ORTHO05D007240 3.7e-22 110.5 75 70.7
Pp3c6_17579 Physcomitrium patens HOM05D005741 ORTHO05D007240 1.4e-21 108.6 78 61.5
Aa31LG6G170 Aethionema arabicum HOM05D005741 ORTHO05D007240 1.2e-20 105.5 111 46.8
Hma1.2p1_2773F.1_g328260 Hydrangea macrophylla HOM05D005741 ORTHO05D228475 2.9e-14 84.3 79 54.4
AL7G37230 Arabidopsis lyrata HOM05D005741 ORTHO05D007240 1.9e-13 81.6 42 83.3


User provided reference genes

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