Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G076700 Populus trichocarpa HOM05D008099 ORTHO05D010084 4.5e-56 221.1 117 100.0
Potri.001G158100 Populus trichocarpa HOM05D008099 ORTHO05D010084 2.7e-40 168.7 117 77.8
Sabra01G0133400 Salix brachista HOM05D008099 ORTHO05D010084 2.0e-35 152.5 118 73.7
CiPaw.12G109700 Carya illinoinensis HOM05D008099 ORTHO05D010084 8.6e-23 110.5 117 56.4
Thecc.03G251800 Theobroma cacao HOM05D008099 ORTHO05D010084 2.8e-21 105.5 117 53.8
Manes.01G080400 Manihot esculenta HOM05D008099 ORTHO05D010084 3.1e-20 102.1 122 54.9
Gohir.A12G217300 Gossypium hirsutum HOM05D008099 ORTHO05D010084 7.5e-19 97.4 117 48.7
Gorai.004G198900 Gossypium raimondii HOM05D008099 ORTHO05D010084 2.2e-18 95.9 120 46.7
Gohir.D12G219832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 2.9e-18 95.5 117 47.0
Gorai.008G235500 Gossypium raimondii HOM05D008099 ORTHO05D010084 3.2e-17 92.0 117 45.3
Cpa.g.sc29.154 Carica papaya HOM05D008099 ORTHO05D010084 1.2e-16 90.1 118 48.3
TWI60G1554 Tripterygium wilfordii HOM05D008099 ORTHO05D010084 3.5e-16 88.6 117 45.3
TAR374G1517 Trochodendron aralioides HOM05D008099 ORTHO05D010084 3.5e-16 88.6 117 47.9
Actinidia05205 Actinidia chinensis HOM05D008099 ORTHO05D010084 4.6e-16 88.2 120 45.0
Ciclev10022924m.g Citrus clementina HOM05D008099 ORTHO05D010084 4.6e-16 88.2 121 49.6
COL.COLO4_37181 Corchorus olitorius HOM05D008099 ORTHO05D010084 1.0e-15 87.0 123 45.5
Atru.chr9.1318 Acer truncatum HOM05D008099 ORTHO05D010084 1.3e-15 86.7 119 43.7
TAR627G0883 Trochodendron aralioides HOM05D008099 ORTHO05D010084 1.3e-15 86.7 117 44.4
Hma1.2p1_0316F.1_g123190 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 5.1e-15 84.7 119 42.9
Rhsim07G0108300 Rhododendron simsii HOM05D008099 ORTHO05D010084 5.1e-15 84.7 122 44.3
Cfa012714 Carpinus fangiana HOM05D008099 ORTHO05D010084 8.6e-15 84.0 117 46.2
RcHm_v2.0_Chr7g0203191 Rosa chinensis HOM05D008099 ORTHO05D010084 3.3e-14 82.0 130 43.8
FAN04G2136 Fragaria x ananassa HOM05D008099 ORTHO05D010084 1.2e-13 80.1 134 41.8
FAN18G4449 Fragaria x ananassa HOM05D008099 ORTHO05D010084 1.6e-13 79.7 137 40.9
Solyc06g060675.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 1.6e-13 79.7 118 41.5
Sopen06g020800 Solanum pennellii HOM05D008099 ORTHO05D010084 1.6e-13 79.7 118 41.5
CiPaw.11G154100 Carya illinoinensis HOM05D008099 ORTHO05D010084 2.8e-13 79.0 118 44.9
MD04G1064000 Malus domestica HOM05D008099 ORTHO05D010084 2.8e-13 79.0 123 43.9
FAN08G3271 Fragaria x ananassa HOM05D008099 ORTHO05D010084 3.6e-13 78.6 133 41.4
FAN18G2867 Fragaria x ananassa HOM05D008099 ORTHO05D010084 3.6e-13 78.6 137 40.9
FvH4_5g18850 Fragaria vesca HOM05D008099 ORTHO05D010084 4.7e-13 78.2 138 40.6
Nn6g33963 Nelumbo nucifera HOM05D008099 ORTHO05D010084 6.2e-13 77.8 114 49.1
Nn8g39479 Nelumbo nucifera HOM05D008099 ORTHO05D010084 6.2e-13 77.8 114 48.2
PGSC0003DMG400035312 Solanum tuberosum HOM05D008099 ORTHO05D010084 6.2e-13 77.8 118 39.8
TAR624G1172 Trochodendron aralioides HOM05D008099 ORTHO05D010084 6.2e-13 77.8 117 44.4
Hma1.2p1_0316F.1_g123200 Hydrangea macrophylla HOM05D008099 ORTHO05D010084 1.1e-12 77.0 118 40.7
Eucgr.D02077 Eucalyptus grandis HOM05D008099 ORTHO05D010084 1.8e-12 76.3 127 39.4
Nn6g33964 Nelumbo nucifera HOM05D008099 ORTHO05D010084 6.8e-12 74.3 113 43.4
Oeu019597.1 Olea europaea HOM05D008099 ORTHO05D010084 6.8e-12 74.3 118 44.9
Sopen08g003320 Solanum pennellii HOM05D008099 ORTHO05D010084 6.8e-12 74.3 125 40.0
PGSC0003DMG400012531 Solanum tuberosum HOM05D008099 ORTHO05D010084 6.8e-12 74.3 125 38.4
Prupe.5G069300 Prunus persica HOM05D008099 ORTHO05D010084 8.9e-12 73.9 109 44.0
Solyc08g007375.1 Solanum lycopersicum HOM05D008099 ORTHO05D010084 1.5e-11 73.2 125 38.4
PGSC0003DMG400013812 Solanum tuberosum HOM05D008099 ORTHO05D010084 1.5e-11 73.2 118 39.0
SalBow6G1675 Salvia bowleyana HOM05D008099 ORTHO05D010084 2.6e-11 72.4 118 42.4
Cc08_g12470 Coffea canephora HOM05D008099 ORTHO05D010084 3.4e-11 72.0 120 36.7
Sc22g0000850 Simmondsia chinensis HOM05D008099 ORTHO05D010084 7.5e-11 70.9 100 46.0
DCAR_004951 Daucus carota HOM05D008099 ORTHO05D010084 2.9e-10 68.9 119 40.3
Gohir.A08G170632 Gossypium hirsutum HOM05D008099 ORTHO05D010084 1.9e-09 66.2 71 50.7
Gohir.D08G188832 Gossypium hirsutum HOM05D008099 ORTHO05D010084 1.9e-09 66.2 71 50.7
Manes.10G147300 Manihot esculenta HOM05D008099 ORTHO05D010084 2.4e-09 65.9 123 43.1
Migut.N00880 Erythranthe guttata HOM05D008099 ORTHO05D010084 5.4e-09 64.7 90 42.2
Gohir.A03G008200 Gossypium hirsutum HOM05D008099 ORTHO05D010084 9.2e-09 63.9 123 40.7
DCAR_027775 Daucus carota HOM05D008099 ORTHO05D010084 1.7e-07 59.7 119 37.8
ECA233G2908 Erigeron canadensis HOM05D008099 ORTHO05D010084 1.7e-07 59.7 117 34.2
Lj4g0008633 Lotus japonicus HOM05D014042 ORTHO05D016237 3.9e-07 58.5 120 40.0
Nn6g33965 Nelumbo nucifera HOM05D008099 ORTHO05D010084 8.6e-07 57.4 117 38.5
Glyma.17G141400 Glycine max HOM05D014042 ORTHO05D016237 1.9e-06 56.2 119 42.9
Lsat_1_v5_gn_3_841 Lactuca sativa HOM05D008099 ORTHO05D010084 3.3e-06 55.5 122 34.4
Lalb_Chr16g0386661 Lupinus albus HOM05D014042 ORTHO05D016237 4.3e-06 55.1 117 43.6
Aqoxy7G00810 Aquilegia oxysepala HOM05D008099 ORTHO05D010084 7.3e-06 54.3 114 35.1
COL.COLO4_37180 Corchorus olitorius HOM05D030758 ORTHO05D010084 7.3e-06 54.3 117 36.8
TAR624G0673 Trochodendron aralioides HOM05D008099 ORTHO05D010084 9.5e-06 53.9 69 47.8


User provided reference genes

Program Settings