Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.9e-59 232.3 112 100.0
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 1.4e-46 189.5 112 82.1
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.3e-41 172.9 111 80.2
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 8.7e-41 170.2 110 79.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 3.8e-36 154.8 114 67.5
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.8e-33 146.0 107 67.3
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.4e-30 135.6 110 58.2
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.0e-25 120.2 101 55.4
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 1.4e-25 119.8 109 54.1
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.5e-24 116.3 109 53.2
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 2.0e-24 115.9 111 52.3
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 2.6e-24 115.5 109 53.2
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 3.3e-24 115.2 109 52.3
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 3.3e-24 115.2 108 51.9
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 4.4e-24 114.8 85 62.4
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.3e-23 113.2 101 54.5
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.7e-23 111.7 108 52.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.8e-23 111.3 114 50.0
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 4.8e-23 111.3 113 50.4
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.1e-22 110.2 101 52.5
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 1.4e-22 109.8 108 50.9
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 5.3e-22 107.8 108 50.9
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 9.1e-22 107.1 115 52.2
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 1.2e-21 106.7 108 50.9
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 2.0e-21 105.9 114 49.1
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.0e-21 105.9 106 52.8
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 2.0e-21 105.9 110 47.3
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.0e-20 103.6 109 49.5
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.3e-20 103.2 106 51.9
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.3e-20 103.2 102 52.0
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 3.8e-20 101.7 108 46.3
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 3.8e-20 101.7 105 51.4
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.0e-20 101.3 110 47.3
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 5.0e-20 101.3 110 47.3
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 5.0e-20 101.3 110 47.3
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 5.0e-20 101.3 100 51.0
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 6.5e-20 100.9 111 52.3
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 8.5e-20 100.5 102 51.0
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 8.5e-20 100.5 85 52.9
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.5e-19 99.8 111 52.3
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.5e-19 99.8 88 55.7
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.9e-19 99.4 102 50.0
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 4.2e-19 98.2 110 49.1
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.2e-18 96.7 99 48.5
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 2.1e-18 95.9 119 43.7
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 2.7e-18 95.5 108 49.1
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 3.6e-18 95.1 89 53.9
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 3.6e-18 95.1 121 43.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 6.1e-18 94.4 114 43.9
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.0e-17 92.0 112 50.9
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.0e-17 91.7 113 50.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 4.0e-17 91.7 108 45.4
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 5.2e-17 91.3 114 44.7
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.2e-16 90.1 85 52.9
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 1.5e-16 89.7 100 48.0
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.5e-16 89.7 73 56.2
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 2.0e-16 89.4 106 45.3
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.3e-16 88.6 100 48.0
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 5.7e-16 87.8 91 46.2
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 7.5e-16 87.4 108 47.2
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 1.7e-15 86.3 110 44.5
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.7e-15 86.3 110 44.5
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.7e-15 86.3 110 44.5
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.7e-15 86.3 93 48.4
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.2e-15 85.9 110 42.7
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.2e-15 85.9 86 47.7
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.7e-15 85.1 106 44.3
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 4.8e-15 84.7 102 46.1
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 1.1e-14 83.6 67 61.2
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.1e-14 83.6 97 44.3
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.1e-14 83.6 87 46.0
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.4e-14 83.2 74 52.7
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.8e-14 82.8 98 41.8
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 2.4e-14 82.4 122 42.6
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 3.1e-14 82.0 66 57.6
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.3e-14 81.3 110 41.8
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.3e-14 81.3 110 41.8
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 5.3e-14 81.3 93 48.4
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 5.3e-14 81.3 86 45.3
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 2.7e-13 79.0 110 43.6
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.7e-13 79.0 59 55.9
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 3.5e-13 78.6 86 45.3
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.5e-13 78.6 110 42.7
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 3.5e-13 78.6 76 53.9
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 3.5e-13 78.6 75 50.7
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 4.5e-13 78.2 62 54.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 5.9e-13 77.8 88 43.2
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 7.7e-13 77.4 115 41.7
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 7.7e-13 77.4 66 53.0
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-12 77.0 85 41.2
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.0e-12 77.0 85 41.2
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 1.0e-12 77.0 70 48.6
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.0e-12 77.0 65 47.7
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 1.3e-12 76.6 106 42.5
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.3e-12 76.6 105 46.7
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 1.3e-12 76.6 74 47.3
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.2e-12 75.9 66 53.0
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 2.2e-12 75.9 84 42.9
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 3.8e-12 75.1 67 50.7
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 5.0e-12 74.7 85 40.0
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 5.0e-12 74.7 85 40.0
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 5.0e-12 74.7 65 47.7
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 6.5e-12 74.3 65 46.2
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 6.5e-12 74.3 85 40.0
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 6.5e-12 74.3 78 39.7
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 6.5e-12 74.3 66 53.0
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 8.5e-12 73.9 110 40.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.1e-11 73.6 61 57.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.9e-11 72.8 54 63.0
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 2.5e-11 72.4 69 50.7
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 2.5e-11 72.4 86 45.3
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 3.2e-11 72.0 60 51.7
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 4.2e-11 71.6 98 38.8
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 4.2e-11 71.6 82 43.9
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 4.2e-11 71.6 68 51.5
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 5.5e-11 71.2 66 47.0
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.6e-10 69.7 76 46.1
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 2.1e-10 69.3 109 45.0
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.7e-10 68.9 81 42.0
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.7e-10 68.9 55 56.4
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.7e-10 68.9 58 56.9
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 3.6e-10 68.6 69 43.5
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 6.1e-10 67.8 56 57.1
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 6.1e-10 67.8 56 57.1
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.0e-09 67.0 60 50.0
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.0e-09 67.0 60 50.0
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.0e-09 67.0 60 50.0
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 3.0e-09 65.5 50 52.0
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 5.2e-09 64.7 111 36.9
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 6.8e-09 64.3 90 40.0
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.5e-08 63.2 52 48.1
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.6e-08 62.4 39 64.1
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 5.7e-08 61.2 41 61.0
SEGI_01582 Sequoiadendron giganteum HOM05D055431 ORTHO05D005760 7.5e-08 60.8 85 36.5
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 1.7e-07 59.7 44 59.1
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.2e-07 59.3 59 45.8
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 6.3e-07 57.8 42 59.5
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 1.4e-06 56.6 64 42.2
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 2.4e-06 55.8 37 59.5
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 9.1e-06 53.9 56 42.9


User provided reference genes

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