Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G072000 Populus trichocarpa HOM05D008314 ORTHO05D010369 4.0e-44 181.0 91 100.0
Thecc.03G325500 Theobroma cacao HOM05D008314 ORTHO05D010369 4.1e-20 101.3 88 58.0
Manes.11G013300 Manihot esculenta HOM05D008314 ORTHO05D010369 3.4e-19 98.2 86 57.0
Thecc.06G129300 Theobroma cacao HOM05D008314 ORTHO05D010369 1.4e-17 92.8 88 55.7
Dinv37824 Davidia involucrata HOM05D008314 ORTHO05D010369 9.3e-17 90.1 88 52.3
Duzib235G1505 Durio zibethinus HOM05D008314 ORTHO05D010369 9.3e-17 90.1 86 54.7
Atru.chr1.4110 Acer truncatum HOM05D008314 ORTHO05D010369 2.7e-16 88.6 92 53.3
Nn6g35721 Nelumbo nucifera HOM05D008314 ORTHO05D010369 1.0e-15 86.7 91 48.4
FAN05G1710 Fragaria x ananassa HOM05D008314 ORTHO05D010369 6.7e-15 84.0 97 47.4
CSS0041009 Camellia sinensis var. sinensis HOM05D008314 ORTHO05D010369 1.5e-14 82.8 87 48.3
Gohir.D06G149000 Gossypium hirsutum HOM05D008314 ORTHO05D010369 1.5e-14 82.8 85 49.4
RcHm_v2.0_Chr2g0147741 Rosa chinensis HOM05D008314 ORTHO05D010369 1.5e-14 82.8 95 48.4
CiPaw.01G212000 Carya illinoinensis HOM05D008314 ORTHO05D010369 2.5e-14 82.0 86 47.7
COL.COLO4_30857 Corchorus olitorius HOM05D008314 ORTHO05D010369 3.3e-14 81.6 57 68.4
Oeu008398.2 Olea europaea HOM05D008314 ORTHO05D010369 3.3e-14 81.6 86 50.0
Rhsim12G0213100 Rhododendron simsii HOM05D008314 ORTHO05D010369 3.3e-14 81.6 88 48.9
Actinidia24433 Actinidia chinensis HOM05D008314 ORTHO05D010369 4.3e-14 81.3 88 51.1
Cpa.g.sc25.184 Carica papaya HOM05D008314 ORTHO05D010369 4.3e-14 81.3 88 48.9
Cc04_g00790 Coffea canephora HOM05D008314 ORTHO05D010369 4.3e-14 81.3 89 48.3
Duzib160G0115 Durio zibethinus HOM05D008314 ORTHO05D010369 7.4e-14 80.5 85 48.2
QL05p001376 Quercus lobata HOM05D008314 ORTHO05D010369 7.4e-14 80.5 86 47.7
Duzib160G0571 Durio zibethinus HOM05D008314 ORTHO05D010369 9.7e-14 80.1 88 50.0
FvH4_6g35740 Fragaria vesca HOM05D008314 ORTHO05D010369 1.3e-13 79.7 95 46.3
FAN09G4263 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.3e-13 79.7 95 45.3
Gorai.010G173500 Gossypium raimondii HOM05D008314 ORTHO05D010369 2.2e-13 79.0 86 48.8
Oeu059021.1 Olea europaea HOM05D008314 ORTHO05D010369 4.8e-13 77.8 86 45.3
SalBow6G0833 Salvia bowleyana HOM05D008314 ORTHO05D010369 4.8e-13 77.8 83 45.8
Gohir.A06G143350 Gossypium hirsutum HOM05D008314 ORTHO05D010369 6.3e-13 77.4 85 48.2
FAN02G2954 Fragaria x ananassa HOM05D008314 ORTHO05D010369 1.4e-12 76.3 97 43.3
TWI14G0587 Tripterygium wilfordii HOM05D008314 ORTHO05D010369 1.8e-12 75.9 90 46.7
Ciclev10026853m.g Citrus clementina HOM05D008314 ORTHO05D010369 2.4e-12 75.5 82 48.8
Ciclev10027008m.g Citrus clementina HOM05D008314 ORTHO05D010369 4.1e-12 74.7 85 47.1
TAR070G0001 Trochodendron aralioides HOM05D008314 ORTHO05D010369 4.1e-12 74.7 87 44.8
ClCG09G001340 Citrullus lanatus HOM05D008314 ORTHO05D010369 2.0e-11 72.4 88 44.3
Lalb_Chr17g0343301 Lupinus albus HOM05D008314 ORTHO05D010369 2.0e-11 72.4 79 46.8
Prupe.3G031600 Prunus persica HOM05D008314 ORTHO05D010369 2.0e-11 72.4 84 48.8
MELO3C024311.2 Cucumis melo HOM05D008314 ORTHO05D010369 3.4e-11 71.6 88 40.9
Glyma.16G013200 Glycine max HOM05D008314 ORTHO05D010369 3.4e-11 71.6 83 42.2
CsaV3_7G033990 Cucumis sativus L. HOM05D008314 ORTHO05D010369 4.5e-11 71.2 78 48.7
PSO135G0082 Papaver somniferum HOM05D008314 ORTHO05D010369 5.9e-11 70.9 83 44.6
Sed0005090 Sechium edule HOM05D008314 ORTHO05D010369 5.9e-11 70.9 87 39.1
MBI13_g01687_MAGBIO Magnolia biondii HOM05D008314 ORTHO05D010369 7.7e-11 70.5 75 44.0
Phvul.010G123800 Phaseolus vulgaris HOM05D008314 ORTHO05D010369 7.7e-11 70.5 85 41.2
Medtr8g022990 Medicago truncatula HOM05D008314 ORTHO05D010369 2.9e-10 68.6 84 40.5
PSO724G1385 Papaver somniferum HOM05D008314 ORTHO05D010369 3.8e-10 68.2 84 40.5
MD09G1173500 Malus domestica HOM05D008314 ORTHO05D010369 6.5e-10 67.4 87 41.4
ATR0099G003 Amborella trichopoda HOM05D008314 ORTHO05D010369 1.1e-09 66.6 88 42.0
Rhsim08G0244000 Rhododendron simsii HOM05D008314 ORTHO05D010369 4.2e-09 64.7 98 34.7
SEGI_28829 Sequoiadendron giganteum HOM05D008314 ORTHO05D010369 4.2e-09 64.7 39 64.1
arahy.Tifrunner.gnm1.ann1.K03VIU Arachis hypogaea HOM05D008314 ORTHO05D010369 5.5e-09 64.3 89 37.1
arahy.Tifrunner.gnm1.ann1.0KI29H Arachis hypogaea HOM05D008314 ORTHO05D010369 7.2e-09 63.9 89 37.1
Psat4g165800 Pisum sativum HOM05D008314 ORTHO05D010369 1.2e-08 63.2 35 65.7
Os02g0564600 Oryza sativa ssp. japonica HOM05D008314 ORTHO05D010369 3.6e-08 61.6 38 65.8
CiPaw.01G212100 Carya illinoinensis HOM05D008314 ORTHO05D010369 4.7e-08 61.2 79 39.2
AUR62001414 Chenopodium quinoa HOM05D008314 ORTHO05D010369 1.4e-07 59.7 97 35.1
Oeu059020.1 Olea europaea HOM05D008314 ORTHO05D010369 1.8e-07 59.3 41 63.4
ATR0796G230 Amborella trichopoda HOM05D017498 ORTHO05D019559 1.5e-06 56.2 47 46.8
AUR62025623 Chenopodium quinoa HOM05D008314 ORTHO05D010369 1.5e-06 56.2 98 33.7
ATR0796G176 Amborella trichopoda HOM05D017498 ORTHO05D019559 2.0e-06 55.8 80 36.2
SEGI_18497 Sequoiadendron giganteum HOM05D042000 ORTHO05D010369 2.0e-06 55.8 31 64.5


User provided reference genes

Program Settings