Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 3.9e-81 304.7 147 100.0
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 2.2e-60 235.7 140 82.9
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 2.2e-52 209.1 152 72.4
Sabra06G0202600 Salix brachista HOM05D008824 ORTHO05D003125 8.5e-44 180.6 148 65.5
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 1.8e-25 119.8 127 52.0
Potri.003G048200 Populus trichocarpa HOM05D008824 ORTHO05D003125 2.6e-24 115.9 121 56.2
Manes.03G012100 Manihot esculenta HOM05D003969 ORTHO05D003125 1.1e-22 110.5 136 50.0
CiPaw.07G226900 Carya illinoinensis HOM05D003969 ORTHO05D003125 6.1e-18 94.7 127 47.2
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 1.1e-14 84.0 131 42.0
TWI34G0986 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 4.1e-14 82.0 119 41.2
Atru.chr7.2498 Acer truncatum HOM05D003969 ORTHO05D003125 5.4e-14 81.6 146 42.5
THA.LOC104815009 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 9.2e-14 80.9 145 37.9
THA.LOC104814116 Tarenaya hassleriana HOM05D008824 ORTHO05D003125 1.5e-11 73.6 140 37.1
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.3e-11 72.4 145 40.7
Aa31LG3G16070 Aethionema arabicum HOM05D008824 ORTHO05D003125 5.6e-11 71.6 149 33.6
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 5.6e-11 71.6 147 40.8
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.3e-11 71.2 149 41.6
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 7.3e-11 71.2 149 41.6
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 1.6e-10 70.1 132 38.6
Cpa.g.sc187.25 Carica papaya HOM05D008824 ORTHO05D003125 2.8e-10 69.3 75 52.0
Haze_21463 Corylus avellana HOM05D008824 ORTHO05D003125 3.6e-10 68.9 132 37.9
Thhalv10016092m.g Eutrema salsugineum HOM05D008824 ORTHO05D003125 4.7e-10 68.6 152 33.6
TWI34G1900 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 6.1e-10 68.2 114 42.1
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 8.0e-10 67.8 129 37.2
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.8e-09 66.6 141 39.7
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.8e-09 66.6 141 41.1
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.8e-09 66.6 138 40.6
BcaB01g06316 Brassica carinata HOM05D008824 ORTHO05D003125 2.3e-09 66.2 148 32.4
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 2.3e-09 66.2 122 40.2
A03p04850 Brassica napus HOM05D008824 ORTHO05D003125 4.0e-09 65.5 147 34.0
BraA03t09824Z Brassica rapa HOM05D008824 ORTHO05D003125 4.0e-09 65.5 147 34.0
C03p05580 Brassica napus HOM05D008824 ORTHO05D003125 5.2e-09 65.1 143 31.5
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 5.2e-09 65.1 134 38.1
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.2e-09 65.1 134 38.1
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 5.2e-09 65.1 145 39.3
BcaB01g05491 Brassica carinata HOM05D008824 ORTHO05D003125 8.9e-09 64.3 148 31.8
BolC3t13066H Brassica oleracea HOM05D008824 ORTHO05D003125 8.9e-09 64.3 148 31.8
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 8.9e-09 64.3 149 40.3
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.2e-08 63.9 136 39.0
CARHR202220 Cardamine hirsuta HOM05D008824 ORTHO05D003125 1.5e-08 63.5 155 31.6
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 2.0e-08 63.2 128 36.7
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 2.0e-08 63.2 144 36.8
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 2.6e-08 62.8 132 37.9
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-08 62.8 126 38.9
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.6e-08 62.8 126 38.9
BcaNung07098 Brassica carinata HOM05D008824 ORTHO05D003125 3.4e-08 62.4 149 31.5
BraA10t44721Z Brassica rapa HOM05D008824 ORTHO05D003125 3.4e-08 62.4 147 32.7
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 3.4e-08 62.4 92 44.6
BcaC04g19263 Brassica carinata HOM05D008824 ORTHO05D003125 4.4e-08 62.0 148 32.4
A10p26630 Brassica napus HOM05D008824 ORTHO05D003125 4.4e-08 62.0 148 32.4
C09p65790 Brassica napus HOM05D008824 ORTHO05D003125 4.4e-08 62.0 148 32.4
BolC9t59401H Brassica oleracea HOM05D008824 ORTHO05D003125 4.4e-08 62.0 148 32.4
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 5.8e-08 61.6 124 40.3
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 7.5e-08 61.2 82 48.8
AT5G11070 Arabidopsis thaliana HOM05D008824 ORTHO05D003125 9.8e-08 60.8 147 32.0
AL6G21690 Arabidopsis lyrata HOM05D008824 ORTHO05D003125 1.7e-07 60.1 149 32.2
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 1.7e-07 60.1 121 39.7
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 3.7e-07 58.9 149 34.2
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 3.7e-07 58.9 128 38.3
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 3.7e-07 58.9 144 35.4
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 6.4e-07 58.2 121 36.4
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 6.4e-07 58.2 133 36.8
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 8.3e-07 57.8 124 37.9
BcaNung01909 Brassica carinata HOM05D008824 ORTHO05D003125 1.1e-06 57.4 145 32.4
BcaNung01911 Brassica carinata HOM05D008824 ORTHO05D003125 1.1e-06 57.4 145 32.4
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 1.4e-06 57.0 133 35.3
Lalb_Chr24g0402081 Lupinus albus HOM05D013068 ORTHO05D003125 1.4e-06 57.0 127 33.9
Sp6g32430 Schrenkiella parvula HOM05D008824 ORTHO05D003125 1.4e-06 57.0 147 29.9
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 1.4e-06 57.0 131 36.6
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.9e-06 56.6 79 44.3
Carub.0006s0958 Capsella rubella HOM05D008824 ORTHO05D003125 1.9e-06 56.6 160 31.2
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.9e-06 56.6 131 35.1
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 2.4e-06 56.2 115 37.4
BraA02t05065Z Brassica rapa HOM05D008824 ORTHO05D003125 2.4e-06 56.2 142 28.9
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 2.4e-06 56.2 133 36.1
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 3.2e-06 55.8 123 38.2
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 3.2e-06 55.8 83 45.8
Gohir.D05G059000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.2e-06 55.8 123 35.8
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.2e-06 55.8 141 36.9
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.1e-06 55.5 135 37.8
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 4.1e-06 55.5 85 47.1
Gorai.009G060100 Gossypium raimondii HOM05D003969 ORTHO05D003125 5.4e-06 55.1 123 35.8
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 5.4e-06 55.1 141 35.5
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 7.0e-06 54.7 128 33.6
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 9.2e-06 54.3 141 36.2
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 9.2e-06 54.3 100 42.0
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 9.2e-06 54.3 125 34.4


User provided reference genes

Program Settings