Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G066200 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1946.4 995 100.0
Sabra03G0038700 Salix brachista HOM05D005576 ORTHO05D007010 0.0e+00 1825.8 963 96.6
Potri.001G168100 Populus trichocarpa HOM05D005576 ORTHO05D007010 0.0e+00 1695.2 995 86.6
Manes.11G019400 Manihot esculenta HOM05D005576 ORTHO05D007010 0.0e+00 1580.8 998 80.1
Haze_16039 Corylus avellana HOM05D005576 ORTHO05D007010 0.0e+00 1518.8 995 76.9
TAR626G1694 Trochodendron aralioides HOM05D005576 ORTHO05D007010 0.0e+00 1511.9 997 76.0
Dinv20428 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1511.1 972 78.8
Prupe.3G039600 Prunus persica HOM05D005576 ORTHO05D007010 0.0e+00 1505.7 995 76.3
Atru.chr1.3999 Acer truncatum HOM05D005576 ORTHO05D007010 0.0e+00 1504.2 995 76.2
TWI31G0259 Tripterygium wilfordii HOM05D005576 ORTHO05D007010 0.0e+00 1502.3 995 75.2
COL.COLO4_30746 Corchorus olitorius HOM05D005576 ORTHO05D007010 0.0e+00 1501.9 995 77.2
CANSAT56G3183 Cannabis sativa HOM05D005576 ORTHO05D007010 0.0e+00 1501.5 995 76.0
Actinidia26024 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1498.4 995 74.9
Thecc.06G121300 Theobroma cacao HOM05D005576 ORTHO05D007010 0.0e+00 1486.1 995 76.9
Duzib235G0347 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1482.6 995 75.1
GSVIVG01016742001 Vitis vinifera HOM05D005576 ORTHO05D007010 0.0e+00 1476.8 996 75.2
CiPaw.02G135100 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1474.1 995 74.6
CiPaw.01G218000 Carya illinoinensis HOM05D005576 ORTHO05D007010 0.0e+00 1473.8 995 74.3
PGSC0003DMG400022883 Solanum tuberosum HOM05D005576 ORTHO05D007010 0.0e+00 1473.0 996 73.3
Nitab4.5_0004422g0040 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1471.8 982 73.9
Sopen03g041140 Solanum pennellii HOM05D005576 ORTHO05D007010 0.0e+00 1470.7 996 73.2
QL05p004145 Quercus lobata HOM05D005576 ORTHO05D007010 0.0e+00 1470.3 995 74.7
vmacro22036 Vaccinium macrocarpon HOM05D005576 ORTHO05D007010 0.0e+00 1470.3 995 74.8
MELO3C024350.2 Cucumis melo HOM05D005576 ORTHO05D007010 0.0e+00 1469.5 996 74.1
CsaV3_7G034420 Cucumis sativus L. HOM05D005576 ORTHO05D007010 0.0e+00 1468.0 996 74.0
CAN.G668.41 Capsicum annuum HOM05D005576 ORTHO05D007010 0.0e+00 1467.6 995 72.7
Nitab4.5_0002898g0010 Nicotiana tabacum HOM05D005576 ORTHO05D007010 0.0e+00 1465.7 989 73.4
MD09G1181500 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1464.1 995 73.9
Gorai.011G059500 Gossypium raimondii HOM05D005576 ORTHO05D007010 0.0e+00 1462.2 995 74.8
ClCG09G001010 Citrullus lanatus HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 1009 73.5
RcHm_v2.0_Chr2g0145781 Rosa chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1461.4 995 74.1
Cc04_g01260 Coffea canephora HOM05D005576 ORTHO05D007010 0.0e+00 1461.0 996 73.7
Dinv37863 Davidia involucrata HOM05D005576 ORTHO05D007010 0.0e+00 1460.7 1020 73.4
Rhsim12G0210100 Rhododendron simsii HOM05D005576 ORTHO05D007010 0.0e+00 1458.0 971 75.9
THA.LOC104808055 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1457.6 995 73.4
FvH4_6g34890 Fragaria vesca HOM05D005576 ORTHO05D007010 0.0e+00 1453.3 995 73.1
Gohir.A10G053800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1452.6 995 74.4
MD17G1167700 Malus domestica HOM05D005576 ORTHO05D007010 0.0e+00 1451.4 995 73.2
FAN09G4405 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1450.6 995 73.1
Nn8g38631 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1450.6 997 73.2
Sed0003060 Sechium edule HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 996 73.3
VMungo1309G3067 Vigna mungo HOM05D005576 ORTHO05D007010 0.0e+00 1449.5 996 73.7
CSS0000574 Camellia sinensis var. sinensis HOM05D005576 ORTHO05D007010 0.0e+00 1437.9 997 73.1
Migut.I01082 Erythranthe guttata HOM05D005576 ORTHO05D007010 0.0e+00 1432.2 995 72.5
Glyma.19G263400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1431.4 995 72.6
Lalb_Chr04g0261101 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1428.3 996 72.6
Lsat_1_v5_gn_4_93500 Lactuca sativa HOM05D005576 ORTHO05D007010 0.0e+00 1426.8 992 70.8
Aqoxy7G04073 Aquilegia oxysepala HOM05D005576 ORTHO05D007010 0.0e+00 1426.0 997 72.4
HanXRQChr09g0276901 Helianthus annuus HOM05D005576 ORTHO05D007010 0.0e+00 1424.5 995 70.6
Lj5C36G17 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1424.1 990 72.8
Lalb_Chr15g0076791 Lupinus albus HOM05D005576 ORTHO05D007010 0.0e+00 1424.1 996 72.1
Thhalv10018070m.g Eutrema salsugineum HOM05D005576 ORTHO05D007010 0.0e+00 1420.6 995 71.2
Sc15g0000400 Simmondsia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1420.2 995 72.0
Nn6g35707 Nelumbo nucifera HOM05D005576 ORTHO05D007010 0.0e+00 1419.8 997 70.8
Ciclev10024809m.g Citrus clementina HOM05D005576 ORTHO05D007010 0.0e+00 1419.4 995 72.6
PGR102G0536 Punica granatum HOM05D005576 ORTHO05D007010 0.0e+00 1418.3 1002 73.0
Ca_09568_v3 Cicer arietinum L. HOM05D005576 ORTHO05D007010 0.0e+00 1416.0 995 71.6
Lj1g0011724 Lotus japonicus HOM05D005576 ORTHO05D007010 0.0e+00 1415.2 995 71.2
Psat3g000040 Pisum sativum HOM05D005576 ORTHO05D007010 0.0e+00 1413.7 995 71.3
Gohir.D10G055800 Gossypium hirsutum HOM05D005576 ORTHO05D007010 0.0e+00 1413.3 963 74.5
TPR.G28874 Trifolium pratense HOM05D005576 ORTHO05D007010 0.0e+00 1408.3 995 71.2
ECA232G2029 Erigeron canadensis HOM05D005576 ORTHO05D007010 0.0e+00 1407.9 995 70.4
CARHR065500 Cardamine hirsuta HOM05D005576 ORTHO05D007010 0.0e+00 1406.0 995 70.1
AT1G72560 Arabidopsis thaliana HOM05D005576 ORTHO05D007010 0.0e+00 1405.2 995 70.1
EL10Ac7g16417 Beta vulgaris HOM05D005576 ORTHO05D007010 0.0e+00 1404.8 997 72.1
Ah.08g216850 Amaranthus hybridus HOM05D005576 ORTHO05D007010 0.0e+00 1404.4 996 71.9
THA.LOC104812251 Tarenaya hassleriana HOM05D005576 ORTHO05D007010 0.0e+00 1402.9 995 70.9
Peaxi162Scf00038g02138 Petunia axillaris HOM05D005576 ORTHO05D007010 0.0e+00 1402.1 1079 66.5
DCAR_026415 Daucus carota HOM05D005576 ORTHO05D007010 0.0e+00 1401.7 963 72.0
Aa31LG4G2910 Aethionema arabicum HOM05D005576 ORTHO05D007010 0.0e+00 1398.6 996 70.1
MBI13_g12059_MAGBIO Magnolia biondii HOM05D005576 ORTHO05D007010 0.0e+00 1392.9 997 70.5
SGA_v2.0_scaffold71G23839 Striga asiatica HOM05D005576 ORTHO05D007010 0.0e+00 1391.3 995 70.4
Medtr7g117565 Medicago truncatula HOM05D005576 ORTHO05D007010 0.0e+00 1387.1 997 69.2
Duzib160G0875 Durio zibethinus HOM05D005576 ORTHO05D007010 0.0e+00 1384.0 998 71.5
Oeu000412.2 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1378.2 995 70.7
Glyma.03G264400 Glycine max HOM05D005576 ORTHO05D007010 0.0e+00 1375.9 996 70.5
Carub.0002s1942 Capsella rubella HOM05D005576 ORTHO05D007010 0.0e+00 1368.6 995 68.1
Oeu015487.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1360.1 963 72.0
MSTRG.4792 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1359.4 996 69.5
AL2G32250 Arabidopsis lyrata HOM05D005576 ORTHO05D007010 0.0e+00 1359.0 995 68.5
PSO421G0066 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1355.9 1007 67.7
Sp5g27640 Schrenkiella parvula HOM05D005576 ORTHO05D007010 0.0e+00 1355.5 995 68.9
SalBow6G0288 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1355.1 981 69.3
SalBow6G5091 Salvia bowleyana HOM05D005576 ORTHO05D007010 0.0e+00 1355.1 981 69.3
Actinidia25327 Actinidia chinensis HOM05D005576 ORTHO05D007010 0.0e+00 1344.7 898 74.4
MSTRG.10949 Avicennia marina HOM05D005576 ORTHO05D007010 0.0e+00 1339.3 995 69.1
FAN14G0396 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1338.6 921 72.7
arahy.Tifrunner.gnm1.ann1.E27NE4 Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1337.4 999 67.8
FAN02G3375 Fragaria x ananassa HOM05D005576 ORTHO05D007010 0.0e+00 1333.2 995 68.3
arahy.Tifrunner.gnm1.ann1.W8MD5J Arachis hypogaea HOM05D005576 ORTHO05D007010 0.0e+00 1324.7 1029 66.0
A07p38760 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 996 66.8
PSO063G0826 Papaver somniferum HOM05D005576 ORTHO05D007010 0.0e+00 1321.6 1001 66.9
BolC6t39733H Brassica oleracea HOM05D005576 ORTHO05D007010 0.0e+00 1321.2 997 66.6
C06p46920 Brassica napus HOM05D005576 ORTHO05D007010 0.0e+00 1319.3 997 66.5
BraA07t31429Z Brassica rapa HOM05D005576 ORTHO05D007010 0.0e+00 1313.9 997 66.6
Solyc03g122370.4 Solanum lycopersicum HOM05D005576 ORTHO05D007010 0.0e+00 1283.5 995 65.6
Hund18687 Selenicereus undatus HOM05D005576 ORTHO05D007010 0.0e+00 1270.0 946 69.3
AUR62001476 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1245.3 964 66.3
ATR0598G079 Amborella trichopoda HOM05D005576 ORTHO05D007010 0.0e+00 1240.3 972 63.2
Lj9A532T67 Lonicera japonica HOM05D005576 ORTHO05D007010 0.0e+00 1200.7 915 68.6
Oeu015486.1 Olea europaea HOM05D005576 ORTHO05D007010 0.0e+00 1194.9 863 71.3
CDE05G1788 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 0.0e+00 1161.4 996 58.0
AUR62009889 Chenopodium quinoa HOM05D005576 ORTHO05D007010 0.0e+00 1130.5 1003 60.4
Phvul.009G263000 Phaseolus vulgaris HOM05D005576 ORTHO05D007010 1.5e-304 1049.7 726 73.7
Eucgr.F04406 Eucalyptus grandis HOM05D005576 ORTHO05D007010 2.1e-303 1045.8 916 61.2
CDE11G0151 Ceratophyllum demersum HOM05D005576 ORTHO05D007010 6.5e-289 997.7 997 51.8
Mapoly0019s0146 Marchantia polymorpha HOM05D005576 ORTHO05D007010 9.2e-283 977.2 1006 49.9
Zm00001eb109040 Zea mays HOM05D005576 ORTHO05D007010 1.0e-281 973.8 1005 50.8
Zm00001eb327340 Zea mays HOM05D005576 ORTHO05D007010 3.3e-280 968.8 1005 51.0
Pp3c12_21910 Physcomitrium patens HOM05D005576 ORTHO05D007010 1.4e-275 953.4 1000 48.2
Os07g0613300 Oryza sativa ssp. japonica HOM05D005576 ORTHO05D007010 1.2e-274 950.3 1005 50.0
Actinidia27733 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.7e-268 929.9 611 75.6
Actinidia26822 Actinidia chinensis HOM05D005576 ORTHO05D007010 3.3e-264 915.6 598 76.1
unitig_899.g14764 Utricularia gibba HOM05D005576 ORTHO05D007010 4.4e-261 905.2 844 56.4
FAN05G3283 Fragaria x ananassa HOM05D005576 ORTHO05D007010 1.0e-249 867.5 610 71.1
HPP92_026306 Vanilla planifolia HOM05D005576 ORTHO05D007010 1.1e-248 864.0 745 59.1
SMO141G0108 Selaginella moellendorffii HOM05D005576 ORTHO05D007010 1.2e-247 860.5 990 46.1
SEGI_13199 Sequoiadendron giganteum HOM05D005576 ORTHO05D007010 6.9e-238 828.2 810 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1866 Anthoceros agrestis HOM05D005576 ORTHO05D007010 8.2e-207 724.9 908 43.0
CBR_g44922 Chara braunii HOM05D005576 ORTHO05D007010 2.9e-204 716.5 1083 36.8
Cpa.g.sc589.4 Carica papaya HOM05D005576 ORTHO05D007010 6.7e-185 652.1 430 76.5
Cpa.g.sc1732.1 Carica papaya HOM05D005576 ORTHO05D007010 1.5e-144 518.1 315 79.7
Dinv20426 Davidia involucrata HOM05D005576 ORTHO05D007010 7.3e-139 499.2 306 80.4
Aa31LG4G2950 Aethionema arabicum HOM05D005576 ORTHO05D007010 2.1e-138 497.7 356 69.7
Cre12.g496200 Chlamydomonas reinhardtii HOM05D005576 ORTHO05D007010 3.5e-117 427.2 1196 28.3
Actinidia26823 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-89 335.9 267 63.3
Actinidia27734 Actinidia chinensis HOM05D005576 ORTHO05D007010 1.1e-89 335.9 267 63.3
MCO02G354 Micromonas commoda HOM05D005576 ORTHO05D007010 1.2e-80 305.8 1128 26.1
HPP92_026305 Vanilla planifolia HOM05D005576 ORTHO05D007010 8.3e-50 203.4 243 43.2
PRCOL_00005439 Prasinoderma coloniale HOM05D005576 ORTHO05D007010 2.0e-40 172.2 960 22.2
BcaB05g24764 Brassica carinata HOM05D005576 ORTHO05D007010 1.3e-31 142.9 122 63.1
C02p30110 Brassica napus HOM05D005576 ORTHO05D007010 1.7e-31 142.5 150 51.3
unitig_899.g14765 Utricularia gibba HOM05D005576 ORTHO05D007010 6.6e-31 140.6 107 62.6
BolC2t09060H Brassica oleracea HOM05D005576 ORTHO05D007010 2.0e-27 129.0 150 48.7
BcaB05g24763 Brassica carinata HOM05D000046 ORTHO05D000457 3.3e-22 111.7 85 64.7
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.2e-17 95.1 64 71.9
Sabra01G0142500 Salix brachista HOM05D005576 ORTHO05D007010 1.6e-08 66.2 40 75.0
A02p18080 Brassica napus HOM05D005576 ORTHO05D041195 9.6e-06 57.0 45 66.7
BraA02t06855Z Brassica rapa HOM05D005576 ORTHO05D041195 9.6e-06 57.0 45 66.7


User provided reference genes

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