Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G063800 Populus trichocarpa HOM05D006979 ORTHO05D008857 3.5e-169 598.2 305 100.0
Sabra03G0037400 Salix brachista HOM05D006979 ORTHO05D008857 1.1e-149 533.5 311 88.1
Manes.11G021300 Manihot esculenta HOM05D006979 ORTHO05D008857 6.1e-129 464.5 302 78.5
Atru.chr1.3953 Acer truncatum HOM05D006979 ORTHO05D008857 8.0e-121 437.6 309 75.4
Ciclev10026147m.g Citrus clementina HOM05D006979 ORTHO05D008857 1.3e-118 430.3 303 75.2
Prupe.3G042700 Prunus persica HOM05D006979 ORTHO05D008857 3.7e-118 428.7 304 71.7
MD09G1184500 Malus domestica HOM05D006979 ORTHO05D008857 1.2e-116 423.7 306 71.6
Cpa.g.sc25.110 Carica papaya HOM05D006979 ORTHO05D008857 4.5e-116 421.8 304 74.0
FvH4_6g34590 Fragaria vesca HOM05D006979 ORTHO05D008857 5.9e-116 421.4 303 72.3
Thecc.06G118900 Theobroma cacao HOM05D006979 ORTHO05D008857 1.3e-115 420.2 299 71.9
FAN09G4734 Fragaria x ananassa HOM05D006979 ORTHO05D008857 1.7e-115 419.9 303 72.3
Gorai.009G146700 Gossypium raimondii HOM05D006979 ORTHO05D008857 1.7e-115 419.9 301 72.1
Gohir.D05G142800 Gossypium hirsutum HOM05D006979 ORTHO05D008857 3.8e-115 418.7 301 72.1
Cfa003539 Carpinus fangiana HOM05D006979 ORTHO05D008857 2.5e-114 416.0 299 71.6
RcHm_v2.0_Chr2g0145111 Rosa chinensis HOM05D006979 ORTHO05D008857 3.3e-114 415.6 304 72.4
Duzib235G1224 Durio zibethinus HOM05D006979 ORTHO05D008857 7.3e-114 414.5 294 73.5
TAR383G0452 Trochodendron aralioides HOM05D006979 ORTHO05D008857 3.0e-112 409.1 289 72.0
TWI31G0112 Tripterygium wilfordii HOM05D006979 ORTHO05D008857 3.4e-111 405.6 308 70.5
COL.COLO4_30769 Corchorus olitorius HOM05D006979 ORTHO05D008857 9.8e-111 404.1 296 72.0
AUR62001490 Chenopodium quinoa HOM05D006979 ORTHO05D008857 8.3e-110 401.0 301 70.4
CiPaw.01G219600 Carya illinoinensis HOM05D006979 ORTHO05D008857 2.4e-109 399.4 252 77.8
Lj3g0022239 Lotus japonicus HOM05D006979 ORTHO05D008857 2.4e-109 399.4 302 70.2
CANSAT56G2284 Cannabis sativa HOM05D006979 ORTHO05D008857 3.2e-109 399.1 309 70.2
AUR62009880 Chenopodium quinoa HOM05D006979 ORTHO05D008857 4.1e-109 398.7 302 70.9
GSVIVG01016774001 Vitis vinifera HOM05D006979 ORTHO05D008857 9.2e-109 397.5 292 69.9
Rhsim08G0237900 Rhododendron simsii HOM05D006979 ORTHO05D008857 3.9e-107 392.1 275 71.3
Dinv04035 Davidia involucrata HOM05D006979 ORTHO05D008857 6.6e-107 391.3 269 75.1
vmacro15023 Vaccinium macrocarpon HOM05D006979 ORTHO05D008857 1.5e-106 390.2 289 68.2
Actinidia32181 Actinidia chinensis HOM05D006979 ORTHO05D008857 7.3e-106 387.9 275 72.4
CSS0018635 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 9.5e-106 387.5 299 67.9
QL05p008051 Quercus lobata HOM05D006979 ORTHO05D008857 2.1e-105 386.3 351 61.5
Sed0019772 Sechium edule HOM05D006979 ORTHO05D008857 2.1e-105 386.3 290 67.2
TPR.G16442 Trifolium pratense HOM05D006979 ORTHO05D008857 3.6e-105 385.6 307 66.1
Phvul.010G133500 Phaseolus vulgaris HOM05D006979 ORTHO05D008857 4.7e-105 385.2 310 66.5
Glyma.16G005300 Glycine max HOM05D006979 ORTHO05D008857 6.2e-105 384.8 306 67.0
CSS0026622 Camellia sinensis var. sinensis HOM05D006979 ORTHO05D008857 3.1e-104 382.5 301 67.4
Glyma.07G036000 Glycine max HOM05D006979 ORTHO05D008857 5.2e-104 381.7 306 66.0
CsaV3_7G034520 Cucumis sativus L. HOM05D006979 ORTHO05D008857 6.8e-104 381.3 279 68.5
FAN05G0457 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.8e-104 381.3 281 70.8
Lalb_Chr04g0263421 Lupinus albus HOM05D006979 ORTHO05D008857 6.8e-104 381.3 262 73.3
Medtr8g019510 Medicago truncatula HOM05D006979 ORTHO05D008857 4.4e-103 378.6 266 71.8
Migut.D00941 Erythranthe guttata HOM05D006979 ORTHO05D008857 4.9e-102 375.2 257 73.5
Oeu015481.1 Olea europaea HOM05D006979 ORTHO05D008857 1.4e-101 373.6 280 68.6
Eucgr.F03173 Eucalyptus grandis HOM05D006979 ORTHO05D008857 1.9e-101 373.2 283 67.8
THA.LOC104813956 Tarenaya hassleriana HOM05D006979 ORTHO05D008857 3.2e-101 372.5 304 64.8
Nitab4.5_0000189g0250 Nicotiana tabacum HOM05D006979 ORTHO05D008857 4.1e-101 372.1 293 65.5
Nitab4.5_0001199g0130 Nicotiana tabacum HOM05D006979 ORTHO05D008857 4.1e-101 372.1 258 71.3
Atru.chr1.3954 Acer truncatum HOM05D006979 ORTHO05D008857 2.7e-100 369.4 245 75.9
SGA_v2.0_scaffold4G02061 Striga asiatica HOM05D006979 ORTHO05D008857 3.5e-100 369.0 295 66.1
Lj9A522T69 Lonicera japonica HOM05D006979 ORTHO05D008857 7.8e-100 367.9 249 74.7
VMungo0331G0985 Vigna mungo HOM05D006979 ORTHO05D008857 1.3e-99 367.1 322 61.8
PGSC0003DMG400011606 Solanum tuberosum HOM05D006979 ORTHO05D008857 6.6e-99 364.8 269 68.0
CAN.G1368.7 Capsicum annuum HOM05D006979 ORTHO05D008857 8.6e-99 364.4 304 64.1
Aqoxy5G02291 Aquilegia oxysepala HOM05D006979 ORTHO05D008857 3.3e-98 362.5 313 62.0
Gohir.A05G140600 Gossypium hirsutum HOM05D006979 ORTHO05D008857 5.6e-98 361.7 301 64.8
Hund05741 Selenicereus undatus HOM05D006979 ORTHO05D008857 5.6e-98 361.7 315 61.9
Sopen12g023760 Solanum pennellii HOM05D006979 ORTHO05D008857 2.1e-97 359.8 267 68.2
ECA234G1570 Erigeron canadensis HOM05D006979 ORTHO05D008857 4.7e-97 358.6 289 62.3
ClCG09G000940 Citrullus lanatus HOM05D006979 ORTHO05D008857 1.4e-96 357.1 335 57.3
SalBow7G2243 Salvia bowleyana HOM05D006979 ORTHO05D008857 1.8e-96 356.7 274 68.2
BcaNung07150 Brassica carinata HOM05D006979 ORTHO05D008857 4.0e-96 355.5 306 60.5
Carub.0002s1948 Capsella rubella HOM05D006979 ORTHO05D008857 2.0e-95 353.2 306 59.2
Lsat_1_v5_gn_5_135940 Lactuca sativa HOM05D006979 ORTHO05D008857 2.0e-95 353.2 274 64.6
Solyc12g049280.3 Solanum lycopersicum HOM05D006979 ORTHO05D008857 2.0e-95 353.2 248 71.4
Sc08g0005680 Simmondsia chinensis HOM05D006979 ORTHO05D008857 3.4e-95 352.4 274 65.3
PGR119G0938 Punica granatum HOM05D006979 ORTHO05D008857 9.8e-95 350.9 299 63.2
Haze_16022 Corylus avellana HOM05D006979 ORTHO05D008857 3.7e-94 349.0 298 63.4
Sp5g27700 Schrenkiella parvula HOM05D006979 ORTHO05D008857 4.9e-94 348.6 306 58.8
Peaxi162Scf00177g00513 Petunia axillaris HOM05D006979 ORTHO05D008857 2.4e-93 346.3 264 67.4
C06p46960 Brassica napus HOM05D006979 ORTHO05D008857 7.1e-93 344.7 307 58.6
BolC6t39737H Brassica oleracea HOM05D006979 ORTHO05D008857 7.1e-93 344.7 307 58.6
PSO210G4684 Papaver somniferum HOM05D006979 ORTHO05D008857 1.2e-92 344.0 273 64.8
BcaC08g46707 Brassica carinata HOM05D006979 ORTHO05D008857 4.6e-92 342.0 306 58.8
CDE05G0714 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 4.6e-92 342.0 250 67.2
MBI19_g11849_MAGBIO Magnolia biondii HOM05D006979 ORTHO05D008857 6.0e-92 341.7 278 65.5
AL2G32310 Arabidopsis lyrata HOM05D006979 ORTHO05D008857 1.7e-91 340.1 308 58.4
Cc04_g01400 Coffea canephora HOM05D006979 ORTHO05D008857 6.6e-91 338.2 241 72.6
A07p38800 Brassica napus HOM05D006979 ORTHO05D008857 2.5e-90 336.3 329 55.3
BraA07t31434Z Brassica rapa HOM05D006979 ORTHO05D008857 2.5e-90 336.3 329 55.3
Thhalv10018914m.g Eutrema salsugineum HOM05D006979 ORTHO05D008857 2.5e-90 336.3 278 61.2
Os03g0410700 Oryza sativa ssp. japonica HOM05D006979 ORTHO05D008857 3.3e-90 335.9 260 64.6
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 7.3e-90 334.7 257 67.7
PSO210G5065 Papaver somniferum HOM05D006979 ORTHO05D008857 5.2e-88 328.6 274 63.1
Aa31LG4G3010 Aethionema arabicum HOM05D006979 ORTHO05D008857 8.4e-86 321.2 306 58.8
ATR0598G212 Amborella trichopoda HOM05D006979 ORTHO05D008857 2.4e-85 319.7 297 57.6
arahy.Tifrunner.gnm1.ann1.4E7AR5 Arachis hypogaea HOM05D006979 ORTHO05D008857 1.2e-81 307.4 276 59.4
arahy.Tifrunner.gnm1.ann1.IV001U Arachis hypogaea HOM05D006979 ORTHO05D008857 3.6e-81 305.8 276 59.4
Ca_05018_v3 Cicer arietinum L. HOM05D006979 ORTHO05D008857 2.7e-76 289.7 197 73.6
Nn6g35601 Nelumbo nucifera HOM05D006979 ORTHO05D008857 6.6e-75 285.0 303 52.5
Psat4g183680 Pisum sativum HOM05D006979 ORTHO05D008857 1.5e-74 283.9 207 70.0
AT1G72640 Arabidopsis thaliana HOM05D006979 ORTHO05D008857 4.8e-73 278.9 260 59.2
Zm00001eb019720 Zea mays HOM05D006979 ORTHO05D008857 2.9e-70 269.6 214 63.1
EL10Ac7g16405 Beta vulgaris HOM05D006979 ORTHO05D008857 5.4e-69 265.4 315 50.2
Pp3c11_2100 Physcomitrium patens HOM05D006979 ORTHO05D008857 2.1e-68 263.5 261 52.1
Hma1.2p1_0496F.1_g166210 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 5.3e-64 248.8 169 74.0
CARHR065560 Cardamine hirsuta HOM05D006979 ORTHO05D008857 2.2e-62 243.4 190 63.2
FAN14G3231 Fragaria x ananassa HOM05D006979 ORTHO05D008857 6.4e-62 241.9 161 72.7
Hma1.2p1_0496F.1_g166200 Hydrangea macrophylla HOM05D006979 ORTHO05D008857 3.0e-59 233.0 209 61.2
MELO3C024358.2 Cucumis melo HOM05D006979 ORTHO05D008857 5.3e-56 222.2 164 67.1
AagrBONN_evm.TU.Sc2ySwM_362.1497 Anthoceros agrestis HOM05D006979 ORTHO05D008857 4.2e-53 212.6 202 54.5
SMO117G0249 Selaginella moellendorffii HOM05D006979 ORTHO05D008857 2.7e-52 209.9 275 41.8
Ah.08g216750 Amaranthus hybridus HOM05D006979 ORTHO05D008857 7.4e-42 175.3 192 55.2
SEGI_25115 Sequoiadendron giganteum HOM05D006979 ORTHO05D008857 1.4e-37 161.0 134 59.0
Mapoly0030s0153 Marchantia polymorpha HOM05D006979 ORTHO05D008857 8.2e-33 145.2 149 52.3
Cre02.g095133 Chlamydomonas reinhardtii HOM05D006979 ORTHO05D008857 5.5e-21 105.9 283 31.4
CDE05G2075 Ceratophyllum demersum HOM05D006979 ORTHO05D008857 2.7e-20 103.6 192 35.4
MCO12G160 Micromonas commoda HOM05D006979 ORTHO05D008857 1.7e-17 94.4 273 31.1
Medtr8g019490 Medicago truncatula HOM05D006979 ORTHO05D008857 2.4e-16 90.5 102 49.0
RcHm_v2.0_Chr6g0307231 Rosa chinensis HOM05D006979 ORTHO05D008857 5.0e-14 82.8 56 69.6
RcHm_v2.0_Chr3g0497381 Rosa chinensis HOM05D006979 ORTHO05D008857 5.5e-13 79.3 56 66.1
PRCOL_00001479 Prasinoderma coloniale HOM05D006979 ORTHO05D008857 2.6e-10 70.5 203 27.1
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 1.2e-07 61.6 263 25.9
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 2.0e-07 60.8 266 25.6
CiPaw.09G194500 Carya illinoinensis HOM05D003730 ORTHO05D004458 4.5e-07 59.7 95 37.9
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 4.5e-07 59.7 250 25.6
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 5.9e-07 59.3 241 26.6
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 7.7e-07 58.9 253 26.5
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 7.7e-07 58.9 241 27.4
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 7.7e-07 58.9 241 26.1
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 1.0e-06 58.5 241 26.6
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 1.0e-06 58.5 334 24.6
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.0e-06 58.5 241 27.4
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 1.0e-06 58.5 250 26.0
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 1.0e-06 58.5 242 25.2
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 1.7e-06 57.8 241 26.1
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 1.7e-06 57.8 241 26.1
Mapoly0030s0154 Marchantia polymorpha HOM05D006979 ORTHO05D008857 1.7e-06 57.8 54 44.4
Oeu010095.1 Olea europaea HOM05D003730 ORTHO05D004458 1.7e-06 57.8 215 25.1
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 2.3e-06 57.4 284 25.0
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 2.3e-06 57.4 259 25.1
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 2.9e-06 57.0 231 26.8
Mapoly0110s0021 Marchantia polymorpha HOM05D003730 ORTHO05D004458 2.9e-06 57.0 220 26.8
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 2.9e-06 57.0 241 25.7
CDE04G1817 Ceratophyllum demersum HOM05D003730 ORTHO05D004458 3.8e-06 56.6 95 35.8
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 3.8e-06 56.6 268 24.3
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 3.8e-06 56.6 241 26.1
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 3.8e-06 56.6 241 26.1
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 3.8e-06 56.6 257 26.1
PSO063G2886 Papaver somniferum HOM05D003730 ORTHO05D004458 3.8e-06 56.6 95 35.8
Pp3c16_5470 Physcomitrium patens HOM05D003730 ORTHO05D004458 3.8e-06 56.6 232 27.6
unitig_8.g4054 Utricularia gibba HOM05D003730 ORTHO05D004458 3.8e-06 56.6 93 34.4
VMungo1383G3507 Vigna mungo HOM05D003730 ORTHO05D004458 3.8e-06 56.6 94 36.2
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 5.0e-06 56.2 244 25.4
Glyma.07G133200 Glycine max HOM05D003730 ORTHO05D004458 5.0e-06 56.2 94 36.2
Manes.08G088900 Manihot esculenta HOM05D003730 ORTHO05D004458 5.0e-06 56.2 93 35.5
PSO339G5717 Papaver somniferum HOM05D003730 ORTHO05D004458 5.0e-06 56.2 95 34.7
GSVIVG01034152001 Vitis vinifera HOM05D003730 ORTHO05D004458 5.0e-06 56.2 112 32.1
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 6.5e-06 55.8 264 25.8
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 6.5e-06 55.8 241 25.7
Os03g0822200 Oryza sativa ssp. japonica HOM05D003730 ORTHO05D004458 8.6e-06 55.5 93 35.5
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 8.6e-06 55.5 241 25.3


User provided reference genes

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