Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 2.5e-200 701.8 330 100.0
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 8.3e-164 580.5 329 83.0
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 1.9e-136 489.6 321 70.1
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 5.2e-134 481.5 309 71.5
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 1.3e-129 466.8 317 66.6
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 1.2e-127 460.3 317 66.9
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 2.6e-125 452.6 317 66.2
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 4.4e-125 451.8 317 67.2
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 5.8e-125 451.4 322 65.8
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 2.9e-124 449.1 325 65.5
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 1.9e-123 446.4 328 65.5
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 1.9e-123 446.4 317 65.3
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 1.9e-123 446.4 320 64.1
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 4.2e-123 445.3 324 66.0
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 4.6e-122 441.8 318 62.6
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 3.0e-121 439.1 319 65.5
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 1.6e-119 433.3 323 61.3
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 3.4e-117 425.6 319 61.8
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 6.4e-116 421.4 333 60.7
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 5.4e-115 418.3 325 61.8
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 1.0e-113 414.1 329 60.2
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.3e-113 413.7 325 61.2
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 5.1e-113 411.8 325 60.9
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 8.7e-113 411.0 323 61.0
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 1.1e-112 410.6 319 59.2
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 1.5e-112 410.2 285 67.7
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 4.3e-112 408.7 320 61.2
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 1.3e-111 407.1 332 59.0
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 2.8e-111 406.0 319 58.6
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 8.1e-111 404.4 340 60.3
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 1.1e-110 404.1 320 58.8
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 3.1e-110 402.5 321 60.1
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 5.3e-110 401.7 325 59.7
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 6.9e-110 401.4 324 59.0
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 2.6e-109 399.4 317 58.7
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 4.9e-108 395.2 314 58.0
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 8.4e-108 394.4 316 59.5
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 7.1e-107 391.3 325 57.8
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 1.2e-106 390.6 323 58.5
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.6e-106 390.2 319 57.7
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 2.7e-106 389.4 317 57.7
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 7.9e-106 387.9 323 61.9
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 1.0e-105 387.5 323 57.6
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 3.0e-105 386.0 331 59.2
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 6.7e-105 384.8 323 57.3
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 3.1e-102 375.9 328 56.4
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 3.1e-102 375.9 328 56.4
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 4.0e-102 375.6 330 56.7
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 5.3e-102 375.2 322 56.8
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 1.2e-101 374.0 327 56.3
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 1.2e-101 374.0 327 56.3
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 1.3e-100 370.5 326 56.4
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 1.3e-100 370.5 327 54.1
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 2.2e-100 369.8 324 55.6
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 2.9e-100 369.4 330 55.5
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 1.4e-99 367.1 316 54.7
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 1.2e-98 364.0 319 53.3
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 2.7e-98 362.8 329 53.8
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 7.9e-98 361.3 318 57.2
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 3.0e-97 359.4 330 55.5
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 3.9e-97 359.0 327 53.5
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 8.7e-97 357.8 317 55.8
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 4.3e-96 355.5 246 66.7
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 1.6e-95 353.6 318 54.4
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 2.8e-95 352.8 246 68.3
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 1.1e-94 350.9 319 53.6
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 3.1e-94 349.4 342 51.5
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 2.0e-93 346.7 317 57.1
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 2.7e-90 336.3 320 52.5
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 6.7e-89 331.6 315 52.1
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 9.7e-88 327.8 314 51.3
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 4.5e-77 292.4 226 61.9
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 1.7e-76 290.4 251 56.2
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 1.9e-75 287.0 286 50.3
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.2e-63 246.9 208 53.8
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 5.0e-60 235.7 198 57.1
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.6e-53 214.2 319 37.6
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.1e-51 208.0 312 37.5
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 2.5e-51 206.8 153 62.7
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 1.2e-34 151.4 317 30.9
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.9e-31 140.2 282 33.7
ATR1156G045 Amborella trichopoda HOM05D007753 ORTHO05D009385 4.1e-30 136.3 231 35.9
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 2.0e-29 134.0 307 30.3
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 4.3e-27 126.3 98 62.2
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 3.0e-20 103.6 304 28.0
ATR0561G071 Amborella trichopoda HOM05D005977 ORTHO05D004563 4.3e-19 99.8 245 28.6
Nn4g24931 Nelumbo nucifera HOM05D007753 ORTHO05D009385 3.6e-18 96.7 175 40.6
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.0e-16 90.9 67 64.2
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 4.4e-16 89.7 276 27.5
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 2.9e-15 87.0 322 26.4
SEGI_07480 Sequoiadendron giganteum HOM05D005977 ORTHO05D004563 3.7e-15 86.7 219 28.8
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 1.9e-14 84.3 312 24.7
arahy.Tifrunner.gnm1.ann1.8GYA0C Arachis hypogaea HOM05D002809 ORTHO05D004563 4.1e-14 83.2 313 24.9
Pp3c26_380 Physcomitrium patens HOM05D002809 ORTHO05D007546 4.1e-14 83.2 302 24.2
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 5.4e-14 82.8 312 24.7
Duzib268G1054 Durio zibethinus HOM05D002809 ORTHO05D004563 2.1e-13 80.9 306 24.5
TAR371G1123 Trochodendron aralioides HOM05D002809 ORTHO05D004563 2.1e-13 80.9 291 25.8
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 3.5e-13 80.1 291 26.5
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 4.6e-13 79.7 315 25.7
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 6.0e-13 79.3 305 26.2
Gohir.D01G146700 Gossypium hirsutum HOM05D002809 ORTHO05D004563 6.0e-13 79.3 306 24.5
Gorai.002G182600 Gossypium raimondii HOM05D002809 ORTHO05D004563 6.0e-13 79.3 306 24.5
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 1.0e-12 78.6 291 26.5
Dinv10947 Davidia involucrata HOM05D002809 ORTHO05D004563 1.0e-12 78.6 307 26.4
Dinv17569 Davidia involucrata HOM05D002809 ORTHO05D004563 1.0e-12 78.6 308 25.3
Gohir.A01G154500 Gossypium hirsutum HOM05D002809 ORTHO05D004563 1.0e-12 78.6 307 24.8
Lj3P1070T8 Lonicera japonica HOM05D002809 ORTHO05D004563 1.0e-12 78.6 308 25.6
Rhsim12G0092200 Rhododendron simsii HOM05D002809 ORTHO05D004563 1.0e-12 78.6 326 26.7
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 1.3e-12 78.2 291 25.8
Duzib248G0261 Durio zibethinus HOM05D002809 ORTHO05D004563 1.7e-12 77.8 291 26.5
Oeu006522.1 Olea europaea HOM05D002809 ORTHO05D004563 1.7e-12 77.8 290 25.5
Potri.003G171300 Populus trichocarpa HOM05D002809 ORTHO05D004563 1.7e-12 77.8 291 26.1
Actinidia09645 Actinidia chinensis HOM05D002809 ORTHO05D004563 2.3e-12 77.4 312 24.7
Potri.001G057100 Populus trichocarpa HOM05D002809 ORTHO05D004563 2.3e-12 77.4 291 26.1
Solyc05g015520.3 Solanum lycopersicum HOM05D002809 ORTHO05D004563 2.3e-12 77.4 312 25.0
Duzib251G0128 Durio zibethinus HOM05D002809 ORTHO05D004563 3.9e-12 76.6 291 25.4
unitig_8.g3134 Utricularia gibba HOM05D002809 ORTHO05D004563 3.9e-12 76.6 250 25.6
Ciclev10031436m.g Citrus clementina HOM05D002809 ORTHO05D004563 5.1e-12 76.3 291 25.1
CiPaw.05G108500 Carya illinoinensis HOM05D002809 ORTHO05D004563 6.6e-12 75.9 292 25.3
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 6.6e-12 75.9 291 25.1
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 8.6e-12 75.5 317 24.3
FAN12G0247 Fragaria x ananassa HOM05D002809 ORTHO05D004563 8.6e-12 75.5 291 25.4
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.1e-11 75.1 317 24.3
FvH4_4g23620 Fragaria vesca HOM05D002809 ORTHO05D004563 1.1e-11 75.1 291 25.4
Sabra01G0041300 Salix brachista HOM05D002809 ORTHO05D004563 1.1e-11 75.1 291 25.8
Cc11_g17010 Coffea canephora HOM05D002809 ORTHO05D004563 1.5e-11 74.7 242 26.4
RcHm_v2.0_Chr4g0430081 Rosa chinensis HOM05D002809 ORTHO05D004563 1.5e-11 74.7 291 25.1
Thecc.02G206300 Theobroma cacao HOM05D002809 ORTHO05D004563 1.5e-11 74.7 306 24.2
TPR.G17783 Trifolium pratense HOM05D002809 ORTHO05D004563 1.5e-11 74.7 292 24.7
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 1.9e-11 74.3 291 25.1
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 1.9e-11 74.3 308 24.7
ClCG06G001130 Citrullus lanatus HOM05D002809 ORTHO05D004563 3.3e-11 73.6 224 27.7
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 3.3e-11 73.6 308 24.0
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 5.6e-11 72.8 323 23.8
FAN17G0774 Fragaria x ananassa HOM05D002809 ORTHO05D004563 5.6e-11 72.8 291 25.1
Mapoly0045s0086 Marchantia polymorpha HOM05D005977 ORTHO05D009385 5.6e-11 72.8 208 28.4
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 5.6e-11 72.8 294 21.4
Os01g0923900 Oryza sativa ssp. japonica HOM05D002809 ORTHO05D004563 5.6e-11 72.8 239 24.3
Sabra03G0125400 Salix brachista HOM05D002809 ORTHO05D004563 5.6e-11 72.8 291 25.8
Actinidia20715 Actinidia chinensis HOM05D002809 ORTHO05D004563 7.3e-11 72.4 242 25.6
AagrBONN_evm.TU.Sc2ySwM_362.2328 Anthoceros agrestis HOM05D004302 ORTHO05D009385 7.3e-11 72.4 308 23.1
Glyma.18G005400 Glycine max HOM05D002809 ORTHO05D004563 7.3e-11 72.4 312 23.1
A09p38610 Brassica napus HOM05D002809 ORTHO05D004563 1.2e-10 71.6 225 28.0
Lsat_1_v5_gn_8_147861 Lactuca sativa HOM05D002809 ORTHO05D004563 1.6e-10 71.2 289 25.6
Medtr3g085160 Medicago truncatula HOM05D002809 ORTHO05D004563 1.6e-10 71.2 293 23.9
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 1.6e-10 71.2 290 24.5
DCAR_026456 Daucus carota HOM05D002809 ORTHO05D004563 2.8e-10 70.5 242 25.6
Thhalv10007553m.g Eutrema salsugineum HOM05D002809 ORTHO05D004563 2.8e-10 70.5 226 27.9
Glyma.11G251600 Glycine max HOM05D002809 ORTHO05D004563 2.8e-10 70.5 311 23.8
Phvul.001G262700 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 2.8e-10 70.5 290 24.1
CsaV3_6G007070 Cucumis sativus L. HOM05D002809 ORTHO05D004563 3.6e-10 70.1 225 26.7
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 3.6e-10 70.1 233 25.3
VMungo0251G0428 Vigna mungo HOM05D002809 ORTHO05D004563 3.6e-10 70.1 312 22.4
Zm00001eb143020 Zea mays HOM05D002809 ORTHO05D004563 4.7e-10 69.7 243 23.0
BraA09t39366Z Brassica rapa HOM05D002809 ORTHO05D004563 6.2e-10 69.3 225 27.6
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 6.2e-10 69.3 224 25.0
CARHR026910 Cardamine hirsuta HOM05D002809 ORTHO05D004563 8.1e-10 68.9 226 27.4
FAN07G0920 Fragaria x ananassa HOM05D002809 ORTHO05D004563 8.1e-10 68.9 291 24.7
SMO361G0323 Selaginella moellendorffii HOM05D002809 ORTHO05D004939 8.1e-10 68.9 284 22.5
CAN.G70.10 Capsicum annuum HOM05D002809 ORTHO05D004563 1.4e-09 68.2 307 23.1
AT1G27340 Arabidopsis thaliana HOM05D002809 ORTHO05D004563 1.8e-09 67.8 226 27.4
Carub.0001s2587 Capsella rubella HOM05D002809 ORTHO05D004563 2.4e-09 67.4 226 27.9
Ca_16451_v3 Cicer arietinum L. HOM05D002809 ORTHO05D004563 2.4e-09 67.4 293 23.9
Sp1g23570 Schrenkiella parvula HOM05D002809 ORTHO05D004563 2.4e-09 67.4 226 27.4
AL1G40740 Arabidopsis lyrata HOM05D002809 ORTHO05D004563 3.1e-09 67.0 226 27.4
HanXRQChr12g0361241 Helianthus annuus HOM05D002809 ORTHO05D004563 5.2e-09 66.2 281 25.6
MBI16_g07988_MAGBIO Magnolia biondii HOM05D007423 ORTHO05D009091 6.8e-09 65.9 291 27.5
Peaxi162Scf00128g00136 Petunia axillaris HOM05D002809 ORTHO05D004563 6.8e-09 65.9 308 23.7
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 1.2e-08 65.1 225 25.8
HanXRQChr08g0207911 Helianthus annuus HOM05D002809 ORTHO05D004563 2.0e-08 64.3 309 24.9
Nn1g04493 Nelumbo nucifera HOM05D007753 ORTHO05D009385 2.6e-08 63.9 56 50.0
ECA246G0607 Erigeron canadensis HOM05D002809 ORTHO05D004563 4.4e-08 63.2 242 26.0
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 4.4e-08 63.2 225 25.3
unitig_22.g6404 Utricularia gibba HOM05D002809 ORTHO05D004563 4.4e-08 63.2 244 24.6
Nn4g24930 Nelumbo nucifera HOM05D007753 ORTHO05D009385 9.9e-08 62.0 47 57.4
ATR1156G059 Amborella trichopoda HOM05D007753 ORTHO05D009385 1.7e-07 61.2 96 35.4
SalBow7G0003 Salvia bowleyana HOM05D007423 ORTHO05D009091 2.2e-07 60.8 296 25.7
PSO478G1885 Papaver somniferum HOM05D002809 ORTHO05D004563 1.1e-06 58.5 225 24.0
PGR119G2572 Punica granatum HOM05D002809 ORTHO05D004563 1.1e-06 58.5 253 24.9
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.1e-06 58.5 225 23.1
ECA233G5207 Erigeron canadensis HOM05D002809 ORTHO05D004563 1.4e-06 58.2 225 24.0
Lalb_Chr07g0187081 Lupinus albus HOM05D002809 ORTHO05D004563 1.9e-06 57.8 237 23.2
Rhsim11G0183200 Rhododendron simsii HOM05D000007 ORTHO05D000521 5.4e-06 56.2 175 25.7


User provided reference genes

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