Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 6.7e-265 916.8 457 100.0
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 1.4e-233 812.8 458 89.5
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 3.0e-196 688.7 399 85.5
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 9.9e-192 673.7 457 72.4
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 1.4e-190 669.8 438 76.5
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.2e-190 668.7 465 71.8
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 7.1e-190 667.5 457 72.2
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 3.5e-189 665.2 435 75.2
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.0e-188 662.1 433 73.9
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 3.9e-188 661.8 423 76.4
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.5e-187 659.1 464 71.6
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 5.6e-187 657.9 433 73.4
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.6e-186 656.4 433 73.4
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 1.6e-186 656.4 384 79.9
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 3.7e-186 655.2 455 72.7
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 1.1e-185 653.7 427 74.7
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.1e-185 653.7 469 69.9
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.2e-184 650.2 402 79.4
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.5e-184 649.8 434 74.9
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 2.0e-184 649.4 439 73.1
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 2.6e-184 649.0 389 78.9
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.5e-184 648.3 447 72.7
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.7e-183 646.4 449 72.2
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 2.9e-183 645.6 459 71.0
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 2.5e-182 642.5 386 79.8
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 2.5e-182 642.5 409 76.8
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 1.6e-181 639.8 455 70.1
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 3.5e-181 638.6 439 70.8
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.0e-180 637.1 456 70.6
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.3e-180 636.7 431 73.5
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 1.8e-180 636.3 363 81.3
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 2.3e-180 636.0 431 72.4
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 3.0e-180 635.6 390 75.6
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.0e-180 635.6 387 76.5
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 5.1e-180 634.8 378 77.8
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.1e-179 633.6 433 72.7
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 3.3e-179 632.1 441 70.1
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.3e-179 631.7 412 75.2
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.3e-178 630.2 424 72.4
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 1.6e-178 629.8 465 68.8
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.4e-177 626.7 438 70.3
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 1.8e-177 626.3 414 73.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 2.4e-177 625.9 393 75.8
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 3.1e-177 625.5 412 73.1
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 5.3e-177 624.8 353 83.0
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 5.3e-177 624.8 395 74.9
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 6.9e-177 624.4 406 74.4
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 9.0e-177 624.0 463 66.7
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 2.6e-176 622.5 400 74.0
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 4.5e-176 621.7 355 82.0
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 4.5e-176 621.7 384 76.6
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 5.9e-176 621.3 415 72.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 2.2e-175 619.4 462 68.2
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 3.8e-175 618.6 401 74.3
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 8.5e-175 617.5 450 68.4
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 8.5e-175 617.5 465 66.9
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.1e-174 617.1 460 68.3
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.4e-174 616.7 464 65.7
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 1.9e-174 616.3 460 68.3
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.9e-174 616.3 460 68.3
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 4.2e-174 615.1 446 68.4
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 4.2e-174 615.1 426 69.7
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 5.5e-174 614.8 377 76.1
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 1.2e-173 613.6 414 70.5
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 1.2e-173 613.6 443 67.3
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 2.1e-173 612.8 421 71.0
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 2.1e-173 612.8 459 67.8
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 3.6e-173 612.1 391 73.7
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.6e-173 612.1 407 72.5
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 1.0e-172 610.5 395 73.7
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.3e-172 610.1 459 66.7
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 1.3e-172 610.1 434 69.1
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 1.8e-172 609.8 381 75.3
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.5e-171 606.7 439 69.7
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.9e-171 606.3 454 65.9
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.3e-170 603.6 435 69.7
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.3e-170 603.6 429 68.5
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 2.2e-170 602.8 443 68.6
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 2.8e-170 602.4 436 70.0
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 3.7e-170 602.1 398 73.6
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 3.7e-170 602.1 457 66.5
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 6.3e-170 601.3 408 72.1
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 6.3e-170 601.3 398 73.6
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 6.3e-170 601.3 408 72.1
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 3.1e-169 599.0 418 69.9
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 4.1e-169 598.6 454 67.2
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 9.1e-169 597.4 418 69.9
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 1.2e-168 597.0 435 69.7
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 4.5e-168 595.1 434 68.0
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 5.9e-168 594.7 434 68.0
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.7e-167 593.2 387 72.9
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-166 590.5 418 69.4
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 7.2e-166 587.8 398 72.4
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 9.4e-166 587.4 377 73.7
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 1.6e-165 586.6 373 73.7
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.7e-165 585.9 406 69.5
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 4.6e-165 585.1 434 67.1
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 1.4e-164 583.6 418 68.7
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 3.9e-164 582.0 437 66.4
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 6.7e-164 581.3 418 68.2
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.5e-163 580.1 439 66.3
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 1.3e-162 577.0 403 68.5
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.8e-161 573.2 399 68.2
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.4e-161 572.8 318 83.6
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 5.3e-161 571.6 407 68.8
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 6.9e-161 571.2 418 67.5
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.0e-159 567.4 449 63.9
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.3e-159 567.0 368 73.9
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.9e-159 565.8 351 76.4
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 5.0e-159 565.1 443 64.6
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 1.9e-158 563.1 394 68.3
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 5.5e-158 561.6 369 71.5
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 5.5e-158 561.6 351 73.5
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 3.6e-157 558.9 407 68.6
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 7.9e-157 557.8 356 74.4
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 2.9e-151 539.3 342 72.2
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 9.4e-150 534.3 365 68.5
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 9.1e-145 517.7 346 69.4
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 2.1e-141 506.5 351 67.8
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 3.7e-138 495.7 404 62.6
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 9.5e-134 481.1 343 67.1
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.0e-132 477.6 328 70.4
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 1.8e-132 476.9 284 76.4
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 2.8e-130 469.5 335 68.1
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.3e-126 456.1 330 62.7
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 3.7e-122 442.6 311 66.6
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 2.7e-120 436.4 275 74.5
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.9e-118 430.3 337 59.1
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 2.1e-117 426.8 247 81.0
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.5e-115 420.6 334 57.8
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 4.6e-112 409.1 336 54.5
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 9.5e-110 401.4 331 56.2
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 8.3e-106 388.3 331 53.5
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 1.6e-96 357.5 284 63.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.6e-91 340.1 292 59.9
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 2.8e-85 320.1 346 44.5
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 1.1e-76 291.6 328 43.6
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 5.3e-76 289.3 326 46.3
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.7e-66 257.7 146 82.9
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 8.5e-58 228.8 128 78.1
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 2.1e-56 224.2 242 51.7
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 3.9e-39 166.8 164 47.0
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 2.0e-38 164.5 164 46.3
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 9.7e-38 162.2 284 35.9
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.3e-36 156.4 243 39.9
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 6.5e-34 149.4 81 84.0
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 2.6e-30 137.5 91 72.5
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 3.3e-30 137.1 129 52.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-22 111.7 126 46.8
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.1e-17 95.5 82 52.4
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 2.1e-08 64.7 52 48.1
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 5.2e-07 60.1 45 57.8


User provided reference genes

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